HEADER OXIDOREDUCTASE 12-APR-05 1ZCJ TITLE CRYSTAL STRUCTURE OF 3-HYDROXYACYL-COA DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOMAL BIFUNCTIONAL ENZYME; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 3-HYDROXYACYL-COA DEHYDROGENASE; COMPND 5 SYNONYM: PBE, PBFE, MFE1 (3S)-HYDROXYACYL-COA DEHYDROGENASE; COMPND 6 EC: 1.1.1.35; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 1, RAT, L-BIFUNCTIONAL KEYWDS 2 ENZYME, MFE-1, FATTY ACID BETA OXIDATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.P.TASKINEN,T.R.KIEMA,J.K.HILTUNEN,R.K.WIERENGA REVDAT 5 25-OCT-23 1ZCJ 1 REMARK REVDAT 4 11-OCT-17 1ZCJ 1 REMARK REVDAT 3 13-JUL-11 1ZCJ 1 VERSN REVDAT 2 24-FEB-09 1ZCJ 1 VERSN REVDAT 1 10-JAN-06 1ZCJ 0 JRNL AUTH J.P.TASKINEN,T.R.KIEMA,J.K.HILTUNEN,R.K.WIERENGA JRNL TITL STRUCTURAL STUDIES OF MFE-1: THE 1.9A CRYSTAL STRUCTURE OF JRNL TITL 2 THE DEHYDROGENASE PART OF RAT PEROXISOMAL MFE-1 JRNL REF J.MOL.BIOL. V. 355 734 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16330050 JRNL DOI 10.1016/J.JMB.2005.10.085 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1115 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4977 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1680 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3559 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 582 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : 0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.118 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3692 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4995 ; 1.680 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 458 ; 6.181 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 540 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2789 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2939 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 761 ; 0.185 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 156 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 63 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2289 ; 0.814 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3692 ; 1.439 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1403 ; 2.325 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1303 ; 3.570 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 278 A 472 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5240 -24.1340 -4.0880 REMARK 3 T TENSOR REMARK 3 T11: 0.1942 T22: 0.1896 REMARK 3 T33: 0.1539 T12: -0.0012 REMARK 3 T13: 0.0269 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 1.7919 L22: 0.9891 REMARK 3 L33: 0.8224 L12: -0.1067 REMARK 3 L13: -0.5419 L23: 0.3081 REMARK 3 S TENSOR REMARK 3 S11: 0.0848 S12: 0.0132 S13: 0.2783 REMARK 3 S21: 0.0305 S22: 0.0145 S23: 0.0512 REMARK 3 S31: -0.1068 S32: -0.0771 S33: -0.0993 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 478 A 604 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5290 -43.8180 19.1600 REMARK 3 T TENSOR REMARK 3 T11: 0.1900 T22: 0.1948 REMARK 3 T33: 0.1340 T12: -0.0162 REMARK 3 T13: -0.0012 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.1452 L22: 0.8231 REMARK 3 L33: 1.3060 L12: -0.3094 REMARK 3 L13: -0.5661 L23: 0.2827 REMARK 3 S TENSOR REMARK 3 S11: -0.0643 S12: -0.0280 S13: 0.0223 REMARK 3 S21: 0.0112 S22: 0.0315 S23: 0.1149 REMARK 3 S31: 0.1079 S32: -0.1506 S33: 0.0328 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 614 A 710 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6050 -47.3820 2.0390 REMARK 3 T TENSOR REMARK 3 T11: 0.1965 T22: 0.1207 REMARK 3 T33: 0.0933 T12: -0.0039 REMARK 3 T13: 0.0026 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.7810 L22: 0.7596 REMARK 3 L33: 0.6522 L12: -0.0948 REMARK 3 L13: -0.1277 L23: -0.0215 REMARK 3 S TENSOR REMARK 3 S11: -0.0399 S12: 0.0197 S13: -0.0809 REMARK 3 S21: 0.0421 S22: 0.0374 S23: -0.0695 REMARK 3 S31: 0.1357 S32: 0.0291 S33: 0.0025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZCJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.134 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37374 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1WDK ALPHA SUBUNIT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, TRI-NA CITRATE, AMMONIUM REMARK 280 ACETATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.12500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 61.45500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 61.45500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.56250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 61.45500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 61.45500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.68750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 61.45500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.45500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 14.56250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 61.45500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.45500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.68750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 29.12500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1115 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 260 REMARK 465 SER A 720 REMARK 465 LYS A 721 REMARK 465 LEU A 722 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 268 O HOH A 1267 1.22 REMARK 500 CD GLN A 268 O HOH A 1267 2.03 REMARK 500 O HOH A 898 O HOH A 1260 2.13 REMARK 500 O HOH A 961 O HOH A 1299 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 519 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 SER A 542 C - N - CA ANGL. DEV. = 15.3 DEGREES REMARK 500 GLY A 553 N - CA - C ANGL. DEV. = -15.2 DEGREES REMARK 500 ARG A 657 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 304 50.02 -117.89 REMARK 500 ALA A 380 47.97 -141.75 REMARK 500 PHE A 382 127.12 -38.99 REMARK 500 GLU A 383 89.31 -67.81 REMARK 500 ARG A 423 51.72 -149.26 REMARK 500 PHE A 478 -126.11 50.41 REMARK 500 THR A 539 -23.00 -152.66 REMARK 500 SER A 542 -28.58 120.51 REMARK 500 ALA A 715 -8.30 -140.41 REMARK 500 HIS A 718 -14.22 -147.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 552 GLY A 553 -34.51 REMARK 500 REMARK 500 REMARK: NULL DBREF 1ZCJ A 260 722 UNP P07896 ECHP_RAT 259 721 SEQRES 1 A 463 ALA SER GLY GLN ALA LYS ALA LEU GLN TYR ALA PHE PHE SEQRES 2 A 463 ALA GLU LYS SER ALA ASN LYS TRP SER THR PRO SER GLY SEQRES 3 A 463 ALA SER TRP LYS THR ALA SER ALA GLN PRO VAL SER SER SEQRES 4 A 463 VAL GLY VAL LEU GLY LEU GLY THR MET GLY ARG GLY ILE SEQRES 5 A 463 ALA ILE SER PHE ALA ARG VAL GLY ILE SER VAL VAL ALA SEQRES 6 A 463 VAL GLU SER ASP PRO LYS GLN LEU ASP ALA ALA LYS LYS SEQRES 7 A 463 ILE ILE THR PHE THR LEU GLU LYS GLU ALA SER ARG ALA SEQRES 8 A 463 HIS GLN ASN GLY GLN ALA SER ALA LYS PRO LYS LEU ARG SEQRES 9 A 463 PHE SER SER SER THR LYS GLU LEU SER THR VAL ASP LEU SEQRES 10 A 463 VAL VAL GLU ALA VAL PHE GLU ASP MET ASN LEU LYS LYS SEQRES 11 A 463 LYS VAL PHE ALA GLU LEU SER ALA LEU CYS LYS PRO GLY SEQRES 12 A 463 ALA PHE LEU CYS THR ASN THR SER ALA LEU ASN VAL ASP SEQRES 13 A 463 ASP ILE ALA SER SER THR ASP ARG PRO GLN LEU VAL ILE SEQRES 14 A 463 GLY THR HIS PHE PHE SER PRO ALA HIS VAL MET ARG LEU SEQRES 15 A 463 LEU GLU VAL ILE PRO SER ARG TYR SER SER PRO THR THR SEQRES 16 A 463 ILE ALA THR VAL MET SER LEU SER LYS LYS ILE GLY LYS SEQRES 17 A 463 ILE GLY VAL VAL VAL GLY ASN CYS TYR GLY PHE VAL GLY SEQRES 18 A 463 ASN ARG MET LEU ALA PRO TYR TYR ASN GLN GLY PHE PHE SEQRES 19 A 463 LEU LEU GLU GLU GLY SER LYS PRO GLU ASP VAL ASP GLY SEQRES 20 A 463 VAL LEU GLU GLU PHE GLY PHE LYS MET GLY PRO PHE ARG SEQRES 21 A 463 VAL SER ASP LEU ALA GLY LEU ASP VAL GLY TRP LYS ILE SEQRES 22 A 463 ARG LYS GLY GLN GLY LEU THR GLY PRO SER LEU PRO PRO SEQRES 23 A 463 GLY THR PRO VAL ARG LYS ARG GLY ASN SER ARG TYR SER SEQRES 24 A 463 PRO LEU GLY ASP MET LEU CYS GLU ALA GLY ARG PHE GLY SEQRES 25 A 463 GLN LYS THR GLY LYS GLY TRP TYR GLN TYR ASP LYS PRO SEQRES 26 A 463 LEU GLY ARG ILE HIS LYS PRO ASP PRO TRP LEU SER THR SEQRES 27 A 463 PHE LEU SER GLN TYR ARG GLU VAL HIS HIS ILE GLU GLN SEQRES 28 A 463 ARG THR ILE SER LYS GLU GLU ILE LEU GLU ARG CYS LEU SEQRES 29 A 463 TYR SER LEU ILE ASN GLU ALA PHE ARG ILE LEU GLU GLU SEQRES 30 A 463 GLY MET ALA ALA ARG PRO GLU HIS ILE ASP VAL ILE TYR SEQRES 31 A 463 LEU HIS GLY TYR GLY TRP PRO ARG HIS LYS GLY GLY PRO SEQRES 32 A 463 MET PHE TYR ALA ALA SER VAL GLY LEU PRO THR VAL LEU SEQRES 33 A 463 GLU LYS LEU GLN LYS TYR TYR ARG GLN ASN PRO ASP ILE SEQRES 34 A 463 PRO GLN LEU GLU PRO SER ASP TYR LEU ARG ARG LEU VAL SEQRES 35 A 463 ALA GLN GLY SER PRO PRO LEU LYS GLU TRP GLN SER LEU SEQRES 36 A 463 ALA GLY PRO HIS GLY SER LYS LEU FORMUL 2 HOH *582(H2 O) HELIX 1 1 SER A 261 ALA A 273 1 13 HELIX 2 2 GLU A 274 LYS A 279 5 6 HELIX 3 3 GLY A 305 ARG A 317 1 13 HELIX 4 4 ASP A 328 ASN A 353 1 26 HELIX 5 5 SER A 367 SER A 372 5 6 HELIX 6 6 ASP A 384 CYS A 399 1 16 HELIX 7 7 ASN A 413 SER A 419 1 7 HELIX 8 8 ARG A 423 GLN A 425 5 3 HELIX 9 9 SER A 451 ILE A 465 1 15 HELIX 10 10 VAL A 479 GLU A 497 1 19 HELIX 11 11 LYS A 500 GLY A 512 1 13 HELIX 12 12 GLY A 516 GLY A 525 1 10 HELIX 13 13 GLY A 525 GLN A 536 1 12 HELIX 14 14 PRO A 559 ALA A 567 1 9 HELIX 15 15 ASP A 592 HIS A 606 1 15 HELIX 16 16 SER A 614 GLU A 636 1 23 HELIX 17 17 ARG A 641 TYR A 653 1 13 HELIX 18 18 PRO A 656 GLY A 660 5 5 HELIX 19 19 GLY A 661 GLY A 670 1 10 HELIX 20 20 GLY A 670 ASN A 685 1 16 HELIX 21 21 ILE A 688 GLU A 692 5 5 HELIX 22 22 SER A 694 GLN A 703 1 10 HELIX 23 23 PRO A 707 LYS A 709 5 3 HELIX 24 24 GLU A 710 GLY A 716 1 7 SHEET 1 A 8 LEU A 362 SER A 365 0 SHEET 2 A 8 SER A 321 VAL A 325 1 N ALA A 324 O ARG A 363 SHEET 3 A 8 SER A 298 LEU A 302 1 N VAL A 301 O VAL A 325 SHEET 4 A 8 LEU A 376 GLU A 379 1 O VAL A 378 N GLY A 300 SHEET 5 A 8 PHE A 404 THR A 407 1 O CYS A 406 N VAL A 377 SHEET 6 A 8 VAL A 427 PHE A 432 1 O THR A 430 N THR A 407 SHEET 7 A 8 LEU A 441 PRO A 446 -1 O ILE A 445 N GLY A 429 SHEET 8 A 8 ILE A 468 VAL A 471 1 O VAL A 470 N VAL A 444 SHEET 1 B 2 LYS A 551 ARG A 552 0 SHEET 2 B 2 SER A 555 ARG A 556 -1 O SER A 555 N ARG A 552 SHEET 1 C 2 TYR A 579 TYR A 581 0 SHEET 2 C 2 HIS A 589 PRO A 591 -1 O LYS A 590 N GLN A 580 CISPEP 1 SER A 434 PRO A 435 0 -2.85 CISPEP 2 GLY A 540 PRO A 541 0 -23.64 CISPEP 3 PRO A 541 SER A 542 0 -5.93 CISPEP 4 PRO A 717 HIS A 718 0 -27.12 CISPEP 5 HIS A 718 GLY A 719 0 -6.18 CRYST1 122.910 122.910 58.250 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008136 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017167 0.00000