HEADER TRANSFERASE 13-APR-05 1ZD1 TITLE HUMAN SULFORTRANSFERASE SULT4A1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFOTRANSFERASE 4A1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BRAIN SULFOTRANSFERASE-LIKE PROTEIN, HBR-STL, HBR-STL-1, COMPND 5 NERVOUS SYSTEM SULFOTRANSFERASE, NST; COMPND 6 EC: 2.8.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SULT4A1, SULTX3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS SGC, SULT4A1, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,L.DOMBROVSKI,P.LOPPNAU,A.M.EDWARDS,C.H.ARROWSMITH,M.SUNDSTROM, AUTHOR 2 A.BOCHKAREV,A.N.PLOTNIKOV,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 14-FEB-24 1ZD1 1 REMARK REVDAT 4 13-JUL-11 1ZD1 1 VERSN REVDAT 3 09-DEC-08 1ZD1 1 JRNL VERSN REVDAT 2 28-NOV-06 1ZD1 1 KEYWDS REVDAT 1 26-APR-05 1ZD1 0 JRNL AUTH A.ALLALI-HASSANI,P.W.PAN,L.DOMBROVSKI,R.NAJMANOVICH, JRNL AUTH 2 W.TEMPEL,A.DONG,P.LOPPNAU,F.MARTIN,J.THORNTON,J.THONTON, JRNL AUTH 3 A.M.EDWARDS,A.BOCHKAREV,A.N.PLOTNIKOV,M.VEDADI, JRNL AUTH 4 C.H.ARROWSMITH JRNL TITL STRUCTURAL AND CHEMICAL PROFILING OF THE HUMAN CYTOSOLIC JRNL TITL 2 SULFOTRANSFERASES. JRNL REF PLOS BIOL. V. 5 E97 2007 JRNL REFN ISSN 1544-9173 JRNL PMID 17425406 JRNL DOI 10.1371/JOURNAL.PBIO.0050097 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 27265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1462 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1910 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4098 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 222 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.68000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : -2.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.86000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.280 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.239 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.167 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.542 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4216 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5694 ; 2.050 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 490 ; 7.168 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;31.268 ;23.598 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 728 ;17.792 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.603 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 593 ; 0.145 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3239 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2037 ; 0.237 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2793 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 271 ; 0.198 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 69 ; 0.226 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.199 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2582 ; 1.372 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4003 ; 2.204 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1933 ; 3.311 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1691 ; 4.601 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZD1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032586. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VERIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28728 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 82.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.87000 REMARK 200 R SYM (I) : 0.87000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : 0.60000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2M AMMONIUM TARTRATE, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 300K, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.46900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.09750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.46900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.09750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 THR A 8 REMARK 465 PRO A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 72 REMARK 465 ASP A 73 REMARK 465 PRO A 74 REMARK 465 ASP A 75 REMARK 465 GLU A 76 REMARK 465 ILE A 77 REMARK 465 GLY A 78 REMARK 465 LEU A 79 REMARK 465 MET A 80 REMARK 465 ASN A 81 REMARK 465 ILE A 82 REMARK 465 ASP A 83 REMARK 465 ARG A 147 REMARK 465 SER A 148 REMARK 465 LEU A 149 REMARK 465 ARG A 150 REMARK 465 THR A 151 REMARK 465 MET A 152 REMARK 465 SER A 153 REMARK 465 TYR A 154 REMARK 465 ARG A 155 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 SER B 4 REMARK 465 GLU B 5 REMARK 465 ALA B 6 REMARK 465 GLU B 7 REMARK 465 THR B 8 REMARK 465 PRO B 9 REMARK 465 SER B 10 REMARK 465 THR B 11 REMARK 465 PRO B 12 REMARK 465 GLY B 13 REMARK 465 GLU B 14 REMARK 465 PHE B 15 REMARK 465 GLU B 16 REMARK 465 SER B 17 REMARK 465 ALA B 72 REMARK 465 ASP B 73 REMARK 465 PRO B 74 REMARK 465 ASP B 75 REMARK 465 GLU B 76 REMARK 465 ILE B 77 REMARK 465 GLY B 78 REMARK 465 LEU B 79 REMARK 465 MET B 80 REMARK 465 ASN B 81 REMARK 465 ILE B 82 REMARK 465 ASP B 83 REMARK 465 GLU B 84 REMARK 465 ARG B 147 REMARK 465 SER B 148 REMARK 465 LEU B 149 REMARK 465 ARG B 150 REMARK 465 THR B 151 REMARK 465 MET B 152 REMARK 465 SER B 153 REMARK 465 TYR B 154 REMARK 465 ARG B 155 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 202 OG1 THR B 205 1.95 REMARK 500 O HOH A 340 O HOH A 425 2.06 REMARK 500 O HOH A 357 O HOH A 360 2.11 REMARK 500 O HOH A 340 O HOH A 429 2.13 REMARK 500 O HOH A 287 O HOH A 423 2.14 REMARK 500 O HOH A 287 O HOH A 424 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 3005 O HOH B 3065 4556 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 13 N GLY A 13 CA 0.103 REMARK 500 GLU A 37 CG GLU A 37 CD 0.111 REMARK 500 PHE A 161 CB PHE A 161 CG -0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 47 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP A 47 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG A 247 NE - CZ - NH1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG A 247 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 THR B 157 N - CA - C ANGL. DEV. = 22.0 DEGREES REMARK 500 ASP B 266 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 59 -35.32 -37.84 REMARK 500 SER A 69 72.26 -69.70 REMARK 500 GLN A 70 38.77 159.96 REMARK 500 SER A 126 -150.17 62.93 REMARK 500 TYR A 172 -4.20 88.79 REMARK 500 ASP A 202 73.24 -160.87 REMARK 500 ASN A 239 -155.50 -120.09 REMARK 500 HIS B 23 64.04 38.99 REMARK 500 GLN B 70 -104.15 -124.83 REMARK 500 HIS B 122 98.61 -69.92 REMARK 500 ASN B 123 82.39 70.52 REMARK 500 SER B 126 139.78 61.46 REMARK 500 PHE B 145 87.51 -67.90 REMARK 500 THR B 157 143.04 1.63 REMARK 500 TYR B 172 -0.64 100.25 REMARK 500 ASP B 202 78.03 -158.29 REMARK 500 VAL B 216 89.96 -65.73 REMARK 500 ASN B 239 -169.81 -68.68 REMARK 500 ALA B 240 34.26 -61.71 REMARK 500 GLU B 241 4.91 -156.87 REMARK 500 VAL B 245 110.05 7.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 244 VAL B 245 145.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3000 DBREF 1ZD1 A 1 284 UNP Q9BR01 ST4A1_HUMAN 1 284 DBREF 1ZD1 B 1 284 UNP Q9BR01 ST4A1_HUMAN 1 284 SEQRES 1 A 284 MET ALA GLU SER GLU ALA GLU THR PRO SER THR PRO GLY SEQRES 2 A 284 GLU PHE GLU SER LYS TYR PHE GLU PHE HIS GLY VAL ARG SEQRES 3 A 284 LEU PRO PRO PHE CYS ARG GLY LYS MET GLU GLU ILE ALA SEQRES 4 A 284 ASN PHE PRO VAL ARG PRO SER ASP VAL TRP ILE VAL THR SEQRES 5 A 284 TYR PRO LYS SER GLY THR SER LEU LEU GLN GLU VAL VAL SEQRES 6 A 284 TYR LEU VAL SER GLN GLY ALA ASP PRO ASP GLU ILE GLY SEQRES 7 A 284 LEU MET ASN ILE ASP GLU GLN LEU PRO VAL LEU GLU TYR SEQRES 8 A 284 PRO GLN PRO GLY LEU ASP ILE ILE LYS GLU LEU THR SER SEQRES 9 A 284 PRO ARG LEU ILE LYS SER HIS LEU PRO TYR ARG PHE LEU SEQRES 10 A 284 PRO SER ASP LEU HIS ASN GLY ASP SER LYS VAL ILE TYR SEQRES 11 A 284 MET ALA ARG ASN PRO LYS ASP LEU VAL VAL SER TYR TYR SEQRES 12 A 284 GLN PHE HIS ARG SER LEU ARG THR MET SER TYR ARG GLY SEQRES 13 A 284 THR PHE GLN GLU PHE CYS ARG ARG PHE MET ASN ASP LYS SEQRES 14 A 284 LEU GLY TYR GLY SER TRP PHE GLU HIS VAL GLN GLU PHE SEQRES 15 A 284 TRP GLU HIS ARG MET ASP SER ASN VAL LEU PHE LEU LYS SEQRES 16 A 284 TYR GLU ASP MET HIS ARG ASP LEU VAL THR MET VAL GLU SEQRES 17 A 284 GLN LEU ALA ARG PHE LEU GLY VAL SER CYS ASP LYS ALA SEQRES 18 A 284 GLN LEU GLU ALA LEU THR GLU HIS CYS HIS GLN LEU VAL SEQRES 19 A 284 ASP GLN CYS CYS ASN ALA GLU ALA LEU PRO VAL GLY ARG SEQRES 20 A 284 GLY ARG VAL GLY LEU TRP LYS ASP ILE PHE THR VAL SER SEQRES 21 A 284 MET ASN GLU LYS PHE ASP LEU VAL TYR LYS GLN LYS MET SEQRES 22 A 284 GLY LYS CYS ASP LEU THR PHE ASP PHE TYR LEU SEQRES 1 B 284 MET ALA GLU SER GLU ALA GLU THR PRO SER THR PRO GLY SEQRES 2 B 284 GLU PHE GLU SER LYS TYR PHE GLU PHE HIS GLY VAL ARG SEQRES 3 B 284 LEU PRO PRO PHE CYS ARG GLY LYS MET GLU GLU ILE ALA SEQRES 4 B 284 ASN PHE PRO VAL ARG PRO SER ASP VAL TRP ILE VAL THR SEQRES 5 B 284 TYR PRO LYS SER GLY THR SER LEU LEU GLN GLU VAL VAL SEQRES 6 B 284 TYR LEU VAL SER GLN GLY ALA ASP PRO ASP GLU ILE GLY SEQRES 7 B 284 LEU MET ASN ILE ASP GLU GLN LEU PRO VAL LEU GLU TYR SEQRES 8 B 284 PRO GLN PRO GLY LEU ASP ILE ILE LYS GLU LEU THR SER SEQRES 9 B 284 PRO ARG LEU ILE LYS SER HIS LEU PRO TYR ARG PHE LEU SEQRES 10 B 284 PRO SER ASP LEU HIS ASN GLY ASP SER LYS VAL ILE TYR SEQRES 11 B 284 MET ALA ARG ASN PRO LYS ASP LEU VAL VAL SER TYR TYR SEQRES 12 B 284 GLN PHE HIS ARG SER LEU ARG THR MET SER TYR ARG GLY SEQRES 13 B 284 THR PHE GLN GLU PHE CYS ARG ARG PHE MET ASN ASP LYS SEQRES 14 B 284 LEU GLY TYR GLY SER TRP PHE GLU HIS VAL GLN GLU PHE SEQRES 15 B 284 TRP GLU HIS ARG MET ASP SER ASN VAL LEU PHE LEU LYS SEQRES 16 B 284 TYR GLU ASP MET HIS ARG ASP LEU VAL THR MET VAL GLU SEQRES 17 B 284 GLN LEU ALA ARG PHE LEU GLY VAL SER CYS ASP LYS ALA SEQRES 18 B 284 GLN LEU GLU ALA LEU THR GLU HIS CYS HIS GLN LEU VAL SEQRES 19 B 284 ASP GLN CYS CYS ASN ALA GLU ALA LEU PRO VAL GLY ARG SEQRES 20 B 284 GLY ARG VAL GLY LEU TRP LYS ASP ILE PHE THR VAL SER SEQRES 21 B 284 MET ASN GLU LYS PHE ASP LEU VAL TYR LYS GLN LYS MET SEQRES 22 B 284 GLY LYS CYS ASP LEU THR PHE ASP PHE TYR LEU HET GOL B3000 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *222(H2 O) HELIX 1 1 GLU A 14 LYS A 18 5 5 HELIX 2 2 PRO A 28 ARG A 32 5 5 HELIX 3 3 LYS A 34 ASN A 40 1 7 HELIX 4 4 THR A 58 SER A 69 1 12 HELIX 5 5 GLY A 95 LEU A 102 1 8 HELIX 6 6 PRO A 113 LEU A 117 5 5 HELIX 7 7 PRO A 118 ASN A 123 1 6 HELIX 8 8 ASN A 134 PHE A 145 1 12 HELIX 9 9 THR A 157 ASN A 167 1 11 HELIX 10 10 SER A 174 GLU A 184 1 11 HELIX 11 11 GLU A 197 ASP A 202 1 6 HELIX 12 12 ASP A 202 LEU A 214 1 13 HELIX 13 13 ASP A 219 GLN A 236 1 18 HELIX 14 14 GLY A 251 ILE A 256 5 6 HELIX 15 15 THR A 258 GLY A 274 1 17 HELIX 16 16 PRO B 28 ARG B 32 5 5 HELIX 17 17 LYS B 34 PHE B 41 1 8 HELIX 18 18 THR B 58 GLN B 70 1 13 HELIX 19 19 GLY B 95 LEU B 102 1 8 HELIX 20 20 PRO B 113 LEU B 117 5 5 HELIX 21 21 PRO B 118 HIS B 122 5 5 HELIX 22 22 ASN B 134 PHE B 145 1 12 HELIX 23 23 THR B 157 ASN B 167 1 11 HELIX 24 24 SER B 174 HIS B 185 1 12 HELIX 25 25 GLU B 197 ASP B 202 1 6 HELIX 26 26 ASP B 202 GLY B 215 1 14 HELIX 27 27 ASP B 219 ASP B 235 1 17 HELIX 28 28 GLY B 251 ILE B 256 5 6 HELIX 29 29 THR B 258 GLY B 274 1 17 SHEET 1 A 2 PHE A 20 PHE A 22 0 SHEET 2 A 2 VAL A 25 LEU A 27 -1 O LEU A 27 N PHE A 20 SHEET 1 B 4 LEU A 107 SER A 110 0 SHEET 2 B 4 VAL A 48 THR A 52 1 N VAL A 48 O ILE A 108 SHEET 3 B 4 LYS A 127 ALA A 132 1 O ILE A 129 N TRP A 49 SHEET 4 B 4 VAL A 191 LYS A 195 1 O LEU A 194 N TYR A 130 SHEET 1 C 2 PHE B 20 PHE B 22 0 SHEET 2 C 2 VAL B 25 LEU B 27 -1 O VAL B 25 N PHE B 22 SHEET 1 D 4 LEU B 107 SER B 110 0 SHEET 2 D 4 VAL B 48 VAL B 51 1 N VAL B 48 O ILE B 108 SHEET 3 D 4 LYS B 127 ALA B 132 1 O ILE B 129 N VAL B 51 SHEET 4 D 4 VAL B 191 LYS B 195 1 O LEU B 194 N TYR B 130 CISPEP 1 GLN A 93 PRO A 94 0 6.55 CISPEP 2 SER A 104 PRO A 105 0 2.55 CISPEP 3 GLN B 93 PRO B 94 0 0.07 CISPEP 4 SER B 104 PRO B 105 0 -7.83 SITE 1 AC1 5 LYS B 55 GLY B 57 LYS B 109 HIS B 111 SITE 2 AC1 5 ARG B 247 CRYST1 98.938 74.195 85.832 90.00 105.52 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010107 0.000000 0.002808 0.00000 SCALE2 0.000000 0.013478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012092 0.00000