HEADER TRANSCRIPTION 14-APR-05 1ZDT TITLE THE CRYSTAL STRUCTURE OF HUMAN STEROIDOGENIC FACTOR-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: STEROIDOGENIC FACTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: STF-1, SF-1, ADRENAL 4 BINDING PROTEIN, STEROID HORMONE COMPND 5 RECEPTOR AD4BP, FUSHI TARAZU FACTOR HOMOLOG 1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 10 CHAIN: P, Q; COMPND 11 FRAGMENT: RESIDUES 741-752; COMPND 12 SYNONYM: NCOA-2, TRANSCRIPTIONAL INTERMEDIARY FACTOR 2; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS KEYWDS STEROIDOGENIC FACTOR-1, NUCLEAR RECEPTOR, PHOLPHOLIPID, KEYWDS 2 PHOSPHATIDYLETHANOLAMINE, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG,C.ZHANG,A.MARIMUTHU,H.I.KRUPKA,M.TABRIZIZAD,R.SHELLOE,U.MEHRA, AUTHOR 2 K.ENG,H.NGUYEN,C.SETTACHATGUL,B.POWELL,M.V.MILBURN,B.L.WEST REVDAT 7 14-FEB-24 1ZDT 1 REMARK REVDAT 6 20-OCT-21 1ZDT 1 REMARK SEQADV REVDAT 5 13-JUL-11 1ZDT 1 VERSN REVDAT 4 24-FEB-09 1ZDT 1 VERSN REVDAT 3 26-JUL-05 1ZDT 1 CRYST1 SCALE1 SCALE2 SCALE3 REVDAT 3 2 1 REMARK MASTER REVDAT 2 07-JUN-05 1ZDT 1 JRNL REVDAT 1 24-MAY-05 1ZDT 0 JRNL AUTH W.WANG,C.ZHANG,A.MARIMUTHU,H.I.KRUPKA,M.TABRIZIZAD, JRNL AUTH 2 R.SHELLOE,U.MEHRA,K.ENG,H.NGUYEN,C.SETTACHATGUL,B.POWELL, JRNL AUTH 3 M.V.MILBURN,B.L.WEST JRNL TITL THE CRYSTAL STRUCTURES OF HUMAN STEROIDOGENIC FACTOR-1 AND JRNL TITL 2 LIVER RECEPTOR HOMOLOGUE-1 JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 7505 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 15897460 JRNL DOI 10.1073/PNAS.0409482102 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.25 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 34644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1565 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2494 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3350 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3991 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 38.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.34000 REMARK 3 B22 (A**2) : 1.34000 REMARK 3 B33 (A**2) : -2.01000 REMARK 3 B12 (A**2) : 0.67000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.230 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.200 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.778 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4150 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3959 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5585 ; 1.449 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9218 ; 0.870 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 489 ; 6.106 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 648 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4450 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 771 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1036 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4476 ; 0.222 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2537 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 190 ; 0.216 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.195 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 74 ; 0.202 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.283 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2472 ; 0.483 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3971 ; 0.939 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1678 ; 1.532 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1614 ; 2.579 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 221 A 248 REMARK 3 RESIDUE RANGE : A 256 A 460 REMARK 3 RESIDUE RANGE : A 1001 A 1001 REMARK 3 RESIDUE RANGE : A 1002 A 1096 REMARK 3 RESIDUE RANGE : B 1003 B 1003 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6333 15.7404 77.4678 REMARK 3 T TENSOR REMARK 3 T11: 0.1475 T22: 0.0430 REMARK 3 T33: 0.0966 T12: 0.0424 REMARK 3 T13: 0.0394 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 3.9798 L22: 1.1850 REMARK 3 L33: 3.8661 L12: 1.0540 REMARK 3 L13: -1.4853 L23: -0.7088 REMARK 3 S TENSOR REMARK 3 S11: -0.2073 S12: 0.0305 S13: -0.2304 REMARK 3 S21: -0.1365 S22: 0.1174 S23: -0.1467 REMARK 3 S31: 0.4625 S32: 0.1031 S33: 0.0899 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 221 B 459 REMARK 3 RESIDUE RANGE : B 1002 B 1002 REMARK 3 RESIDUE RANGE : B 1004 B 1096 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8346 -26.5101 96.2497 REMARK 3 T TENSOR REMARK 3 T11: 0.0364 T22: 0.0642 REMARK 3 T33: 0.1365 T12: -0.0393 REMARK 3 T13: -0.0407 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 2.3171 L22: 2.3418 REMARK 3 L33: 4.7606 L12: -0.1019 REMARK 3 L13: -0.9180 L23: 0.1451 REMARK 3 S TENSOR REMARK 3 S11: 0.0958 S12: -0.0670 S13: -0.0457 REMARK 3 S21: 0.1480 S22: -0.1934 S23: -0.0795 REMARK 3 S31: -0.1881 S32: 0.4297 S33: 0.0975 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1097 A 1115 REMARK 3 RESIDUE RANGE : Q 199 Q 199 REMARK 3 RESIDUE RANGE : B 1097 B 1115 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9384 -7.1494 86.0037 REMARK 3 T TENSOR REMARK 3 T11: 0.1945 T22: 0.2987 REMARK 3 T33: 0.1919 T12: -0.0351 REMARK 3 T13: 0.0624 T23: -0.0477 REMARK 3 L TENSOR REMARK 3 L11: 0.1838 L22: 0.9466 REMARK 3 L33: 0.1083 L12: -0.1097 REMARK 3 L13: 0.2112 L23: -0.3093 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: 0.0012 S13: -0.0369 REMARK 3 S21: 0.0032 S22: 0.0667 S23: -0.1284 REMARK 3 S31: -0.0260 S32: -0.0310 S33: -0.0465 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 741 P 752 REMARK 3 RESIDUE RANGE : P 230 P 232 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8434 22.0178 93.3912 REMARK 3 T TENSOR REMARK 3 T11: 0.1206 T22: 0.2030 REMARK 3 T33: 0.0632 T12: 0.0220 REMARK 3 T13: 0.0091 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 28.8425 L22: 4.4555 REMARK 3 L33: 26.0428 L12: 7.0765 REMARK 3 L13: 1.3623 L23: -4.4463 REMARK 3 S TENSOR REMARK 3 S11: -0.3451 S12: 0.0365 S13: -0.0457 REMARK 3 S21: 0.2228 S22: 0.0521 S23: -0.7244 REMARK 3 S31: -0.4484 S32: 1.1557 S33: 0.2930 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Q 741 Q 751 REMARK 3 RESIDUE RANGE : A 1116 A 1117 REMARK 3 RESIDUE RANGE : B 1116 B 1116 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1754 -18.1701 101.3310 REMARK 3 T TENSOR REMARK 3 T11: 0.5240 T22: 0.5317 REMARK 3 T33: 0.5700 T12: -0.3155 REMARK 3 T13: -0.0879 T23: 0.1024 REMARK 3 L TENSOR REMARK 3 L11: 20.5790 L22: -4.0154 REMARK 3 L33: 4.2051 L12: -1.1596 REMARK 3 L13: 6.8311 L23: -2.6023 REMARK 3 S TENSOR REMARK 3 S11: 0.2938 S12: -0.6226 S13: 1.0566 REMARK 3 S21: 0.3209 S22: -0.7442 S23: -1.7446 REMARK 3 S31: -0.1387 S32: 0.6812 S33: 0.4504 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZDT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34644 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.77000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, AMMONIUM SULFATE, SUCROSE, PH REMARK 280 5.5, TEMPERATURE 277K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.22600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 130.45200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 130.45200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.22600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Q REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 130.45200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 249 REMARK 465 GLU A 250 REMARK 465 PRO A 251 REMARK 465 THR A 252 REMARK 465 LYS A 253 REMARK 465 SER A 254 REMARK 465 ARG A 255 REMARK 465 THR A 461 REMARK 465 GLN B 460 REMARK 465 THR B 461 REMARK 465 ASP Q 752 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1081 O HOH B 1086 1.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 417 O HOH B 1003 5555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 238 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 278 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 236 109.79 -57.02 REMARK 500 GLU A 237 38.83 -143.18 REMARK 500 ASP A 238 -0.31 89.32 REMARK 500 SER A 247 54.04 -97.00 REMARK 500 VAL A 285 -57.81 74.07 REMARK 500 ALA A 458 78.84 -103.96 REMARK 500 LYS A 459 77.42 29.75 REMARK 500 THR B 252 -79.87 -96.24 REMARK 500 PRO B 256 47.92 -77.58 REMARK 500 ASP B 257 -53.17 -133.48 REMARK 500 VAL B 285 -64.25 70.86 REMARK 500 GLN B 457 30.24 -97.73 REMARK 500 LYS P 751 116.72 178.23 REMARK 500 ASN Q 742 58.39 -147.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 244 LEU A 245 -148.96 REMARK 500 ASP A 257 GLN A 258 -147.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEF A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEF B 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZDC RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF HUMAN LIVER RECEPTOR HOMOLOGUE-1 DBREF 1ZDT A 221 461 UNP Q13285 STF1_HUMAN 221 461 DBREF 1ZDT B 221 461 UNP Q13285 STF1_HUMAN 221 461 DBREF 1ZDT P 741 752 UNP Q15596 NCOA2_HUMAN 741 752 DBREF 1ZDT Q 741 752 UNP Q15596 NCOA2_HUMAN 741 752 SEQADV 1ZDT SER A 247 UNP Q13285 CYS 247 ENGINEERED MUTATION SEQADV 1ZDT SER A 412 UNP Q13285 CYS 412 ENGINEERED MUTATION SEQADV 1ZDT SER B 247 UNP Q13285 CYS 247 ENGINEERED MUTATION SEQADV 1ZDT SER B 412 UNP Q13285 CYS 412 ENGINEERED MUTATION SEQRES 1 A 241 PRO ASN VAL PRO GLU LEU ILE LEU GLN LEU LEU GLN LEU SEQRES 2 A 241 GLU PRO ASP GLU ASP GLN VAL ARG ALA ARG ILE LEU GLY SEQRES 3 A 241 SER LEU GLN GLU PRO THR LYS SER ARG PRO ASP GLN PRO SEQRES 4 A 241 ALA ALA PHE GLY LEU LEU CYS ARG MET ALA ASP GLN THR SEQRES 5 A 241 PHE ILE SER ILE VAL ASP TRP ALA ARG ARG CYS MET VAL SEQRES 6 A 241 PHE LYS GLU LEU GLU VAL ALA ASP GLN MET THR LEU LEU SEQRES 7 A 241 GLN ASN CYS TRP SER GLU LEU LEU VAL PHE ASP HIS ILE SEQRES 8 A 241 TYR ARG GLN VAL GLN HIS GLY LYS GLU GLY SER ILE LEU SEQRES 9 A 241 LEU VAL THR GLY GLN GLU VAL GLU LEU THR THR VAL ALA SEQRES 10 A 241 THR GLN ALA GLY SER LEU LEU HIS SER LEU VAL LEU ARG SEQRES 11 A 241 ALA GLN GLU LEU VAL LEU GLN LEU LEU ALA LEU GLN LEU SEQRES 12 A 241 ASP ARG GLN GLU PHE VAL CYS LEU LYS PHE ILE ILE LEU SEQRES 13 A 241 PHE SER LEU ASP LEU LYS PHE LEU ASN ASN HIS ILE LEU SEQRES 14 A 241 VAL LYS ASP ALA GLN GLU LYS ALA ASN ALA ALA LEU LEU SEQRES 15 A 241 ASP TYR THR LEU CYS HIS TYR PRO HIS SER GLY ASP LYS SEQRES 16 A 241 PHE GLN GLN LEU LEU LEU CYS LEU VAL GLU VAL ARG ALA SEQRES 17 A 241 LEU SER MET GLN ALA LYS GLU TYR LEU TYR HIS LYS HIS SEQRES 18 A 241 LEU GLY ASN GLU MET PRO ARG ASN ASN LEU LEU ILE GLU SEQRES 19 A 241 MET LEU GLN ALA LYS GLN THR SEQRES 1 B 241 PRO ASN VAL PRO GLU LEU ILE LEU GLN LEU LEU GLN LEU SEQRES 2 B 241 GLU PRO ASP GLU ASP GLN VAL ARG ALA ARG ILE LEU GLY SEQRES 3 B 241 SER LEU GLN GLU PRO THR LYS SER ARG PRO ASP GLN PRO SEQRES 4 B 241 ALA ALA PHE GLY LEU LEU CYS ARG MET ALA ASP GLN THR SEQRES 5 B 241 PHE ILE SER ILE VAL ASP TRP ALA ARG ARG CYS MET VAL SEQRES 6 B 241 PHE LYS GLU LEU GLU VAL ALA ASP GLN MET THR LEU LEU SEQRES 7 B 241 GLN ASN CYS TRP SER GLU LEU LEU VAL PHE ASP HIS ILE SEQRES 8 B 241 TYR ARG GLN VAL GLN HIS GLY LYS GLU GLY SER ILE LEU SEQRES 9 B 241 LEU VAL THR GLY GLN GLU VAL GLU LEU THR THR VAL ALA SEQRES 10 B 241 THR GLN ALA GLY SER LEU LEU HIS SER LEU VAL LEU ARG SEQRES 11 B 241 ALA GLN GLU LEU VAL LEU GLN LEU LEU ALA LEU GLN LEU SEQRES 12 B 241 ASP ARG GLN GLU PHE VAL CYS LEU LYS PHE ILE ILE LEU SEQRES 13 B 241 PHE SER LEU ASP LEU LYS PHE LEU ASN ASN HIS ILE LEU SEQRES 14 B 241 VAL LYS ASP ALA GLN GLU LYS ALA ASN ALA ALA LEU LEU SEQRES 15 B 241 ASP TYR THR LEU CYS HIS TYR PRO HIS SER GLY ASP LYS SEQRES 16 B 241 PHE GLN GLN LEU LEU LEU CYS LEU VAL GLU VAL ARG ALA SEQRES 17 B 241 LEU SER MET GLN ALA LYS GLU TYR LEU TYR HIS LYS HIS SEQRES 18 B 241 LEU GLY ASN GLU MET PRO ARG ASN ASN LEU LEU ILE GLU SEQRES 19 B 241 MET LEU GLN ALA LYS GLN THR SEQRES 1 P 12 GLU ASN ALA LEU LEU ARG TYR LEU LEU ASP LYS ASP SEQRES 1 Q 12 GLU ASN ALA LEU LEU ARG TYR LEU LEU ASP LYS ASP HET PEF A1001 47 HET PEF B1002 47 HETNAM PEF DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE HETSYN PEF 3-[AMINOETHYLPHOSPHORYL]-[1,2-DI-PALMITOYL]-SN-GLYCEROL FORMUL 5 PEF 2(C37 H74 N O8 P) FORMUL 7 HOH *235(H2 O) HELIX 1 1 PRO A 224 GLU A 234 1 11 HELIX 2 2 ASP A 238 ILE A 244 1 7 HELIX 3 3 ALA A 261 CYS A 283 1 23 HELIX 4 4 VAL A 285 LEU A 289 5 5 HELIX 5 5 GLU A 290 GLY A 318 1 29 HELIX 6 6 LEU A 333 ALA A 340 1 8 HELIX 7 7 GLY A 341 LEU A 361 1 21 HELIX 8 8 ASP A 364 PHE A 377 1 14 HELIX 9 9 ASP A 380 LEU A 384 5 5 HELIX 10 10 ASN A 386 TYR A 409 1 24 HELIX 11 11 ASP A 414 GLY A 443 1 30 HELIX 12 12 ASN A 450 GLN A 457 1 8 HELIX 13 13 PRO B 224 GLU B 234 1 11 HELIX 14 14 ASP B 236 LEU B 248 1 13 HELIX 15 15 PRO B 259 CYS B 283 1 25 HELIX 16 16 VAL B 285 LEU B 289 5 5 HELIX 17 17 GLU B 290 GLY B 318 1 29 HELIX 18 18 LEU B 333 ALA B 340 1 8 HELIX 19 19 GLY B 341 LEU B 361 1 21 HELIX 20 20 ASP B 364 PHE B 377 1 14 HELIX 21 21 ASP B 380 LEU B 384 5 5 HELIX 22 22 ASN B 386 TYR B 409 1 24 HELIX 23 23 ASP B 414 GLY B 443 1 30 HELIX 24 24 ASN B 450 GLN B 457 1 8 HELIX 25 25 ASN P 742 ASP P 752 1 11 HELIX 26 26 ASN Q 742 ASP Q 750 1 9 SHEET 1 A 2 SER A 322 LEU A 324 0 SHEET 2 A 2 GLU A 330 GLU A 332 -1 O VAL A 331 N ILE A 323 SHEET 1 B 2 SER B 322 LEU B 324 0 SHEET 2 B 2 GLU B 330 GLU B 332 -1 O VAL B 331 N ILE B 323 SITE 1 AC1 14 ALA A 260 PHE A 262 LEU A 265 HIS A 310 SITE 2 AC1 14 VAL A 336 GLY A 341 LEU A 344 LEU A 347 SITE 3 AC1 14 ALA A 433 TYR A 436 LYS A 440 HOH A1029 SITE 4 AC1 14 HOH A1114 ARG B 281 SITE 1 AC2 12 PHE B 262 HIS B 310 VAL B 336 GLN B 339 SITE 2 AC2 12 ALA B 340 GLY B 341 LEU B 344 LEU B 347 SITE 3 AC2 12 TYR B 436 LYS B 440 HOH B1050 HOH B1115 CRYST1 73.601 73.601 195.678 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013587 0.007844 0.000000 0.00000 SCALE2 0.000000 0.015689 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005110 0.00000