HEADER OXIDOREDUCTASE 18-APR-05 1ZEJ TITLE CRYSTAL STRUCTURE OF THE 3-HYDROXYACYL-COA DEHYDROGENASE (HBD-9, TITLE 2 AF2017) FROM ARCHAEOGLOBUS FULGIDUS DSM 4304 AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-HYDROXYACYL-COA DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HBD-9; COMPND 5 EC: 1.1.1.35; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 STRAIN: DSM 4304; SOURCE 5 GENE: HBD-9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 13-NOV-24 1ZEJ 1 REMARK REVDAT 5 25-JAN-23 1ZEJ 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1ZEJ 1 VERSN REVDAT 3 23-MAR-11 1ZEJ 1 TITLE KEYWDS REVDAT 2 24-FEB-09 1ZEJ 1 VERSN REVDAT 1 03-MAY-05 1ZEJ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF 3-HYDROXYACYL-COA DEHYDROGENASE (HBD-9) JRNL TITL 2 (NP_070841.1) FROM ARCHAEOGLOBUS FULGIDUS AT 2.00 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1397 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1864 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1650 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2202 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.629 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2310 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2230 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3119 ; 1.537 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5158 ; 0.869 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 281 ; 5.876 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;30.264 ;23.232 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 416 ;14.090 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.466 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2496 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 468 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 438 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2173 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1099 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1347 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 107 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.175 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 127 ; 0.244 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.245 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1538 ; 1.260 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 576 ; 0.300 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2293 ; 1.692 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 980 ; 2.642 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 826 ; 3.850 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0600 55.1220 -16.7590 REMARK 3 T TENSOR REMARK 3 T11: -0.1504 T22: -0.0625 REMARK 3 T33: -0.0978 T12: 0.0208 REMARK 3 T13: -0.0103 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.5098 L22: 1.9660 REMARK 3 L33: 2.6169 L12: 0.0493 REMARK 3 L13: -1.1937 L23: -1.1080 REMARK 3 S TENSOR REMARK 3 S11: 0.1097 S12: 0.0911 S13: 0.0626 REMARK 3 S21: -0.0946 S22: 0.0091 S23: 0.1201 REMARK 3 S31: -0.0703 S32: -0.0563 S33: -0.1188 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 162 A 281 REMARK 3 ORIGIN FOR THE GROUP (A): -1.0560 51.5530 8.2480 REMARK 3 T TENSOR REMARK 3 T11: -0.1726 T22: -0.0194 REMARK 3 T33: -0.1131 T12: -0.0227 REMARK 3 T13: 0.0239 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 3.2389 L22: 1.0829 REMARK 3 L33: 1.9111 L12: -0.0873 REMARK 3 L13: -0.4998 L23: -0.0272 REMARK 3 S TENSOR REMARK 3 S11: 0.0858 S12: -0.4580 S13: 0.0326 REMARK 3 S21: 0.1822 S22: -0.0660 S23: -0.0426 REMARK 3 S31: 0.0734 S32: 0.1265 S33: -0.0198 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 2. UNMODELED DENSITY NEAR HIS117 MAY BE A COVALENT REMARK 3 MODIFICATION, THOUGH IT CANNOT BE IDENTIFIED. REMARK 4 REMARK 4 1ZEJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032628. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929,0.89194 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27230 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.47900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M TRIS_BASE, 0.20M MG CL, 0.02M REMARK 280 TRIS CL, 24.00% PEG 400, VAPOR DIFFUSION,SITTING DROP,NANODROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 282 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 340 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 406 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 ND1 CD2 CE1 NE2 REMARK 470 LYS A 2 CE NZ REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 LYS A 60 CD CE NZ REMARK 470 LYS A 139 CD CE NZ REMARK 470 GLU A 150 CD OE1 OE2 REMARK 470 GLU A 180 CD OE1 OE2 REMARK 470 LYS A 226 CE NZ REMARK 470 GLU A 231 CG CD OE1 OE2 REMARK 470 GLU A 241 CG CD OE1 OE2 REMARK 470 LYS A 244 CE NZ REMARK 470 LYS A 262 CG CD CE NZ REMARK 470 GLU A 265 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 137 O HOH A 414 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 158 CB CYS A 158 SG -0.187 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 177 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 195 -75.12 -153.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 228 GLY A 229 -34.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE8 A 283 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 356320 RELATED DB: TARGETDB DBREF 1ZEJ A 1 281 UNP O28262 O28262_ARCFU 1 281 SEQADV 1ZEJ MSE A -11 UNP O28262 EXPRESSION TAG SEQADV 1ZEJ GLY A -10 UNP O28262 EXPRESSION TAG SEQADV 1ZEJ SER A -9 UNP O28262 EXPRESSION TAG SEQADV 1ZEJ ASP A -8 UNP O28262 EXPRESSION TAG SEQADV 1ZEJ LYS A -7 UNP O28262 EXPRESSION TAG SEQADV 1ZEJ ILE A -6 UNP O28262 EXPRESSION TAG SEQADV 1ZEJ HIS A -5 UNP O28262 EXPRESSION TAG SEQADV 1ZEJ HIS A -4 UNP O28262 EXPRESSION TAG SEQADV 1ZEJ HIS A -3 UNP O28262 EXPRESSION TAG SEQADV 1ZEJ HIS A -2 UNP O28262 EXPRESSION TAG SEQADV 1ZEJ HIS A -1 UNP O28262 EXPRESSION TAG SEQADV 1ZEJ HIS A 0 UNP O28262 EXPRESSION TAG SEQADV 1ZEJ MSE A 1 UNP O28262 MET 1 MODIFIED RESIDUE SEQADV 1ZEJ MSE A 11 UNP O28262 MET 11 MODIFIED RESIDUE SEQADV 1ZEJ MSE A 66 UNP O28262 MET 66 MODIFIED RESIDUE SEQADV 1ZEJ MSE A 119 UNP O28262 MET 119 MODIFIED RESIDUE SEQADV 1ZEJ MSE A 125 UNP O28262 MET 125 MODIFIED RESIDUE SEQADV 1ZEJ MSE A 178 UNP O28262 MET 178 MODIFIED RESIDUE SEQRES 1 A 293 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 293 LYS VAL PHE VAL ILE GLY ALA GLY LEU MSE GLY ARG GLY SEQRES 3 A 293 ILE ALA ILE ALA ILE ALA SER LYS HIS GLU VAL VAL LEU SEQRES 4 A 293 GLN ASP VAL SER GLU LYS ALA LEU GLU ALA ALA ARG GLU SEQRES 5 A 293 GLN ILE PRO GLU GLU LEU LEU SER LYS ILE GLU PHE THR SEQRES 6 A 293 THR THR LEU GLU LYS VAL LYS ASP CYS ASP ILE VAL MSE SEQRES 7 A 293 GLU ALA VAL PHE GLU ASP LEU ASN THR LYS VAL GLU VAL SEQRES 8 A 293 LEU ARG GLU VAL GLU ARG LEU THR ASN ALA PRO LEU CYS SEQRES 9 A 293 SER ASN THR SER VAL ILE SER VAL ASP ASP ILE ALA GLU SEQRES 10 A 293 ARG LEU ASP SER PRO SER ARG PHE LEU GLY VAL HIS TRP SEQRES 11 A 293 MSE ASN PRO PRO HIS VAL MSE PRO LEU VAL GLU ILE VAL SEQRES 12 A 293 ILE SER ARG PHE THR ASP SER LYS THR VAL ALA PHE VAL SEQRES 13 A 293 GLU GLY PHE LEU ARG GLU LEU GLY LYS GLU VAL VAL VAL SEQRES 14 A 293 CYS LYS GLY GLN SER LEU VAL ASN ARG PHE ASN ALA ALA SEQRES 15 A 293 VAL LEU SER GLU ALA SER ARG MSE ILE GLU GLU GLY VAL SEQRES 16 A 293 ARG ALA GLU ASP VAL ASP ARG VAL TRP LYS HIS HIS LEU SEQRES 17 A 293 GLY LEU LEU TYR THR LEU PHE GLY PRO LEU GLY ASN LEU SEQRES 18 A 293 ASP TYR ILE GLY LEU ASP VAL ALA TYR TYR ALA SER LEU SEQRES 19 A 293 TYR LEU TYR LYS ARG PHE GLY ASP GLU LYS PHE LYS PRO SEQRES 20 A 293 PRO GLU TRP LEU GLN GLU LYS ILE LYS LYS GLY GLU VAL SEQRES 21 A 293 GLY VAL LYS ALA GLY LYS GLY ILE TYR GLU TYR GLY PRO SEQRES 22 A 293 LYS ALA TYR GLU GLU ARG VAL GLU ARG LEU LYS LYS LEU SEQRES 23 A 293 LEU ARG PHE LEU GLY LEU GLU MODRES 1ZEJ MSE A 1 MET SELENOMETHIONINE MODRES 1ZEJ MSE A 11 MET SELENOMETHIONINE MODRES 1ZEJ MSE A 66 MET SELENOMETHIONINE MODRES 1ZEJ MSE A 119 MET SELENOMETHIONINE MODRES 1ZEJ MSE A 125 MET SELENOMETHIONINE MODRES 1ZEJ MSE A 178 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 11 8 HET MSE A 66 8 HET MSE A 119 8 HET MSE A 125 8 HET MSE A 178 8 HET CL A 282 1 HET PE8 A 283 25 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM PE8 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 CL CL 1- FORMUL 3 PE8 C16 H34 O9 FORMUL 4 HOH *135(H2 O) HELIX 1 1 GLY A 9 SER A 21 1 13 HELIX 2 2 SER A 31 ILE A 42 1 12 HELIX 3 3 PRO A 43 SER A 48 5 6 HELIX 4 4 LYS A 58 CYS A 62 5 5 HELIX 5 5 ASP A 72 ARG A 85 1 14 HELIX 6 6 SER A 99 GLU A 105 1 7 HELIX 7 7 SER A 109 SER A 111 5 3 HELIX 8 8 ASP A 137 LEU A 151 1 15 HELIX 9 9 SER A 162 GLY A 182 1 21 HELIX 10 10 ARG A 184 HIS A 194 1 11 HELIX 11 11 HIS A 195 GLY A 213 1 19 HELIX 12 12 GLY A 213 GLY A 229 1 17 HELIX 13 13 ASP A 230 LYS A 234 5 5 HELIX 14 14 PRO A 236 LYS A 245 1 10 HELIX 15 15 GLY A 249 GLY A 253 5 5 HELIX 16 16 LYS A 262 GLY A 279 1 18 SHEET 1 A 8 ILE A 50 THR A 53 0 SHEET 2 A 8 GLU A 24 GLN A 28 1 N LEU A 27 O GLU A 51 SHEET 3 A 8 LYS A 2 ILE A 6 1 N VAL A 5 O VAL A 26 SHEET 4 A 8 ILE A 64 GLU A 67 1 O MSE A 66 N PHE A 4 SHEET 5 A 8 LEU A 91 SER A 93 1 O CYS A 92 N VAL A 65 SHEET 6 A 8 PHE A 113 TRP A 118 1 O VAL A 116 N SER A 93 SHEET 7 A 8 LEU A 127 ILE A 132 -1 O VAL A 131 N GLY A 115 SHEET 8 A 8 GLU A 154 LYS A 159 1 O CYS A 158 N ILE A 130 LINK C HIS A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N LYS A 2 1555 1555 1.34 LINK C LEU A 10 N MSE A 11 1555 1555 1.33 LINK C MSE A 11 N GLY A 12 1555 1555 1.34 LINK C VAL A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N GLU A 67 1555 1555 1.33 LINK C TRP A 118 N MSE A 119 1555 1555 1.33 LINK C MSE A 119 N ASN A 120 1555 1555 1.31 LINK C VAL A 124 N MSE A 125 1555 1555 1.32 LINK C MSE A 125 N PRO A 126 1555 1555 1.35 LINK C ARG A 177 N MSE A 178 1555 1555 1.32 LINK C MSE A 178 N ILE A 179 1555 1555 1.33 CISPEP 1 ASN A 120 PRO A 121 0 -5.33 SITE 1 AC1 1 LEU A 56 SITE 1 AC2 8 ILE A 132 ARG A 134 THR A 136 SER A 138 SITE 2 AC2 8 VAL A 157 LYS A 159 GLU A 181 GLY A 182 CRYST1 146.331 146.331 62.730 90.00 90.00 120.00 P 6 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006830 0.003950 0.000000 0.00000 SCALE2 0.000000 0.007890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015940 0.00000