HEADER TRANSCRIPTION/DNA 20-APR-05 1ZG5 TITLE NARL COMPLEXED TO NARG-89 PROMOTER PALINDROMIC TAIL-TO-TAIL DNA SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*GP*TP*AP*CP*CP*CP*CP*TP*AP*TP*AP*GP*GP*GP*GP*TP*AP COMPND 3 *CP*G)-3'; COMPND 4 CHAIN: C, D, G, H; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL; COMPND 8 CHAIN: A, B, E, F; COMPND 9 FRAGMENT: DNA BINDING DOMAIN (RESIDUES 147-216); COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SOLID PHASE SYNTHESIS; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 6 ORGANISM_TAXID: 562; SOURCE 7 GENE: NARL; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PMJ05 KEYWDS PROTEIN-DNA COMPLEX, HELIX-TURN-HELIX, TWO-COMPONENT RESPONSE KEYWDS 2 REGULATOR, DNA BENDING, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.E.MARIS,M.KACZOR-GRZESKOWIAK,Z.MA,M.L.KOPKA,R.P.GUNSALUS, AUTHOR 2 R.E.DICKERSON REVDAT 4 15-NOV-23 1ZG5 1 REMARK REVDAT 3 23-AUG-23 1ZG5 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1ZG5 1 VERSN REVDAT 1 22-NOV-05 1ZG5 0 JRNL AUTH A.E.MARIS,M.KACZOR-GRZESKOWIAK,Z.MA,M.L.KOPKA,R.P.GUNSALUS, JRNL AUTH 2 R.E.DICKERSON JRNL TITL PRIMARY AND SECONDARY MODES OF DNA RECOGNITION BY THE NARL JRNL TITL 2 TWO-COMPONENT RESPONSE REGULATOR. JRNL REF BIOCHEMISTRY V. 44 14538 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 16262254 JRNL DOI 10.1021/BI050734U REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.E.MARIS,M.R.SAWAYA,M.KACZOR-GRZESKOWIAK,M.R.JARVIS, REMARK 1 AUTH 2 S.M.D.BEARSON,M.L.KOPKA,I.SCHROEDER,R.P.GUNSALUS, REMARK 1 AUTH 3 R.E.DICKERSON REMARK 1 TITL DIMERIZATION ALLOWS DNA TARGET SITE RECOGNITION BY THE NARL REMARK 1 TITL 2 RESPONSE REGULATOR REMARK 1 REF NAT.STRUCT.BIOL. V. 9 771 2002 REMARK 1 REFN ISSN 1072-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH I.BAIKALOV,I.SCHROEDER,M.KACZOR-GRZESKOWIAK,K.GRZESKOWIAK, REMARK 1 AUTH 2 R.P.GUNSALUS,R.E.DICKERSON REMARK 1 TITL STRUCTURE OF THE ESCHERICHIA COLI RESPONSE REGULATOR NARL REMARK 1 REF BIOCHEMISTRY V. 35 11053 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 30200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1495 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 230 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2201 REMARK 3 NUCLEIC ACID ATOMS : 1628 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.83900 REMARK 3 B22 (A**2) : 7.06500 REMARK 3 B33 (A**2) : -8.90500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.35 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.40 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.187 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.036 ; 0.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.844 ; 0.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.910 ; 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 38.79 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZG5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34483 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : 0.13100 REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.68700 REMARK 200 R SYM FOR SHELL (I) : 0.95400 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1JE8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.28500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER BOUND TO DNA. THERE ARE TWO REMARK 300 BIOLOGICAL UNITS IN THE ASYMMETRIC UNIT (CHAINS A, B, C & D AND REMARK 300 CHAINS E, F, G & H) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 135 REMARK 465 ARG A 136 REMARK 465 GLY A 137 REMARK 465 SER A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 GLY A 145 REMARK 465 SER A 146 REMARK 465 ALA A 147 REMARK 465 THR A 148 REMARK 465 THR A 149 REMARK 465 GLU A 150 REMARK 465 MSE B 135 REMARK 465 ARG B 136 REMARK 465 GLY B 137 REMARK 465 SER B 138 REMARK 465 HIS B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 GLY B 145 REMARK 465 SER B 146 REMARK 465 ALA B 147 REMARK 465 THR B 148 REMARK 465 THR B 149 REMARK 465 GLU B 150 REMARK 465 MSE E 135 REMARK 465 ARG E 136 REMARK 465 GLY E 137 REMARK 465 SER E 138 REMARK 465 HIS E 139 REMARK 465 HIS E 140 REMARK 465 HIS E 141 REMARK 465 HIS E 142 REMARK 465 HIS E 143 REMARK 465 HIS E 144 REMARK 465 GLY E 145 REMARK 465 SER E 146 REMARK 465 ALA E 147 REMARK 465 THR E 148 REMARK 465 THR E 149 REMARK 465 MSE F 135 REMARK 465 ARG F 136 REMARK 465 GLY F 137 REMARK 465 SER F 138 REMARK 465 HIS F 139 REMARK 465 HIS F 140 REMARK 465 HIS F 141 REMARK 465 HIS F 142 REMARK 465 HIS F 143 REMARK 465 HIS F 144 REMARK 465 GLY F 145 REMARK 465 SER F 146 REMARK 465 ALA F 147 REMARK 465 THR F 148 REMARK 465 THR F 149 REMARK 465 GLU F 150 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 214 63.89 39.11 REMARK 500 ASP E 152 109.39 63.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 312 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZG1 RELATED DB: PDB REMARK 900 NARL COMPLEX WITH NIRB PROMOTER NONPALINDROMIC DNA REMARK 900 RELATED ID: 1JE8 RELATED DB: PDB REMARK 900 NARL COMPLEX WITH NIRB PROMOTER PALINDROMIC DNA REMARK 900 RELATED ID: 1RNL RELATED DB: PDB REMARK 900 FULL-LENGTH UNACTIVATED NARL REMARK 900 RELATED ID: 1A04 RELATED DB: PDB REMARK 900 FULL-LENGTH UNACTIVATED NARL DBREF 1ZG5 A 147 216 UNP P0AF28 NARL_ECOLI 147 216 DBREF 1ZG5 B 147 216 UNP P0AF28 NARL_ECOLI 147 216 DBREF 1ZG5 E 147 216 UNP P0AF28 NARL_ECOLI 147 216 DBREF 1ZG5 F 147 216 UNP P0AF28 NARL_ECOLI 147 216 DBREF 1ZG5 C 1 20 PDB 1ZG5 1ZG5 1 20 DBREF 1ZG5 D 21 40 PDB 1ZG5 1ZG5 21 40 DBREF 1ZG5 G 1 20 PDB 1ZG5 1ZG5 1 20 DBREF 1ZG5 H 21 40 PDB 1ZG5 1ZG5 21 40 SEQADV 1ZG5 MSE A 135 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 ARG A 136 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 GLY A 137 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 SER A 138 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS A 139 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS A 140 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS A 141 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS A 142 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS A 143 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS A 144 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 GLY A 145 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 SER A 146 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 MSE A 175 UNP P0AF28 MET 175 MODIFIED RESIDUE SEQADV 1ZG5 MSE A 194 UNP P0AF28 MET 194 MODIFIED RESIDUE SEQADV 1ZG5 MSE A 198 UNP P0AF28 MET 198 MODIFIED RESIDUE SEQADV 1ZG5 MSE B 135 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 ARG B 136 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 GLY B 137 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 SER B 138 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS B 139 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS B 140 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS B 141 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS B 142 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS B 143 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS B 144 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 GLY B 145 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 SER B 146 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 MSE B 175 UNP P0AF28 MET 175 MODIFIED RESIDUE SEQADV 1ZG5 MSE B 194 UNP P0AF28 MET 194 MODIFIED RESIDUE SEQADV 1ZG5 MSE B 198 UNP P0AF28 MET 198 MODIFIED RESIDUE SEQADV 1ZG5 MSE E 135 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 ARG E 136 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 GLY E 137 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 SER E 138 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS E 139 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS E 140 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS E 141 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS E 142 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS E 143 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS E 144 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 GLY E 145 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 SER E 146 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 MSE E 175 UNP P0AF28 MET 175 MODIFIED RESIDUE SEQADV 1ZG5 MSE E 194 UNP P0AF28 MET 194 MODIFIED RESIDUE SEQADV 1ZG5 MSE E 198 UNP P0AF28 MET 198 MODIFIED RESIDUE SEQADV 1ZG5 MSE F 135 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 ARG F 136 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 GLY F 137 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 SER F 138 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS F 139 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS F 140 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS F 141 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS F 142 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS F 143 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS F 144 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 GLY F 145 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 SER F 146 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 MSE F 175 UNP P0AF28 MET 175 MODIFIED RESIDUE SEQADV 1ZG5 MSE F 194 UNP P0AF28 MET 194 MODIFIED RESIDUE SEQADV 1ZG5 MSE F 198 UNP P0AF28 MET 198 MODIFIED RESIDUE SEQRES 1 C 20 DC DG DT DA DC DC DC DC DT DA DT DA DG SEQRES 2 C 20 DG DG DG DT DA DC DG SEQRES 1 D 20 DC DG DT DA DC DC DC DC DT DA DT DA DG SEQRES 2 D 20 DG DG DG DT DA DC DG SEQRES 1 G 20 DC DG DT DA DC DC DC DC DT DA DT DA DG SEQRES 2 G 20 DG DG DG DT DA DC DG SEQRES 1 H 20 DC DG DT DA DC DC DC DC DT DA DT DA DG SEQRES 2 H 20 DG DG DG DT DA DC DG SEQRES 1 A 82 MSE ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 A 82 THR THR GLU ARG ASP VAL ASN GLN LEU THR PRO ARG GLU SEQRES 3 A 82 ARG ASP ILE LEU LYS LEU ILE ALA GLN GLY LEU PRO ASN SEQRES 4 A 82 LYS MSE ILE ALA ARG ARG LEU ASP ILE THR GLU SER THR SEQRES 5 A 82 VAL LYS VAL HIS VAL LYS HIS MSE LEU LYS LYS MSE LYS SEQRES 6 A 82 LEU LYS SER ARG VAL GLU ALA ALA VAL TRP VAL HIS GLN SEQRES 7 A 82 GLU ARG ILE PHE SEQRES 1 B 82 MSE ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 B 82 THR THR GLU ARG ASP VAL ASN GLN LEU THR PRO ARG GLU SEQRES 3 B 82 ARG ASP ILE LEU LYS LEU ILE ALA GLN GLY LEU PRO ASN SEQRES 4 B 82 LYS MSE ILE ALA ARG ARG LEU ASP ILE THR GLU SER THR SEQRES 5 B 82 VAL LYS VAL HIS VAL LYS HIS MSE LEU LYS LYS MSE LYS SEQRES 6 B 82 LEU LYS SER ARG VAL GLU ALA ALA VAL TRP VAL HIS GLN SEQRES 7 B 82 GLU ARG ILE PHE SEQRES 1 E 82 MSE ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 E 82 THR THR GLU ARG ASP VAL ASN GLN LEU THR PRO ARG GLU SEQRES 3 E 82 ARG ASP ILE LEU LYS LEU ILE ALA GLN GLY LEU PRO ASN SEQRES 4 E 82 LYS MSE ILE ALA ARG ARG LEU ASP ILE THR GLU SER THR SEQRES 5 E 82 VAL LYS VAL HIS VAL LYS HIS MSE LEU LYS LYS MSE LYS SEQRES 6 E 82 LEU LYS SER ARG VAL GLU ALA ALA VAL TRP VAL HIS GLN SEQRES 7 E 82 GLU ARG ILE PHE SEQRES 1 F 82 MSE ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 F 82 THR THR GLU ARG ASP VAL ASN GLN LEU THR PRO ARG GLU SEQRES 3 F 82 ARG ASP ILE LEU LYS LEU ILE ALA GLN GLY LEU PRO ASN SEQRES 4 F 82 LYS MSE ILE ALA ARG ARG LEU ASP ILE THR GLU SER THR SEQRES 5 F 82 VAL LYS VAL HIS VAL LYS HIS MSE LEU LYS LYS MSE LYS SEQRES 6 F 82 LEU LYS SER ARG VAL GLU ALA ALA VAL TRP VAL HIS GLN SEQRES 7 F 82 GLU ARG ILE PHE MODRES 1ZG5 MSE A 175 MET SELENOMETHIONINE MODRES 1ZG5 MSE A 194 MET SELENOMETHIONINE MODRES 1ZG5 MSE A 198 MET SELENOMETHIONINE MODRES 1ZG5 MSE B 175 MET SELENOMETHIONINE MODRES 1ZG5 MSE B 194 MET SELENOMETHIONINE MODRES 1ZG5 MSE B 198 MET SELENOMETHIONINE MODRES 1ZG5 MSE E 175 MET SELENOMETHIONINE MODRES 1ZG5 MSE E 194 MET SELENOMETHIONINE MODRES 1ZG5 MSE E 198 MET SELENOMETHIONINE MODRES 1ZG5 MSE F 175 MET SELENOMETHIONINE MODRES 1ZG5 MSE F 194 MET SELENOMETHIONINE MODRES 1ZG5 MSE F 198 MET SELENOMETHIONINE HET MSE A 175 8 HET MSE A 194 8 HET MSE A 198 8 HET MSE B 175 8 HET MSE B 194 8 HET MSE B 198 8 HET MSE E 175 8 HET MSE E 194 8 HET MSE E 198 8 HET MSE F 175 8 HET MSE F 194 8 HET MSE F 198 8 HET SO4 A 302 5 HET SO4 A 305 5 HET SO4 A 309 5 HET SO4 B 303 5 HET SO4 B 306 5 HET SO4 B 310 5 HET SO4 E 307 5 HET SO4 E 308 5 HET SO4 E 311 5 HET SO4 F 301 5 HET SO4 F 304 5 HET SO4 F 312 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 5 MSE 12(C5 H11 N O2 SE) FORMUL 9 SO4 12(O4 S 2-) FORMUL 21 HOH *260(H2 O) HELIX 1 1 ASP A 152 LEU A 156 5 5 HELIX 2 2 THR A 157 GLN A 169 1 13 HELIX 3 3 PRO A 172 LEU A 180 1 9 HELIX 4 4 THR A 183 LYS A 199 1 17 HELIX 5 5 SER A 202 GLU A 213 1 12 HELIX 6 6 ASP B 152 LEU B 156 5 5 HELIX 7 7 THR B 157 GLN B 169 1 13 HELIX 8 8 PRO B 172 ASP B 181 1 10 HELIX 9 9 THR B 183 MSE B 198 1 16 HELIX 10 10 SER B 202 GLU B 213 1 12 HELIX 11 11 ASP E 152 LEU E 156 5 5 HELIX 12 12 THR E 157 GLN E 169 1 13 HELIX 13 13 PRO E 172 ASP E 181 1 10 HELIX 14 14 THR E 183 LYS E 199 1 17 HELIX 15 15 SER E 202 GLU E 213 1 12 HELIX 16 16 ASP F 152 LEU F 156 5 5 HELIX 17 17 THR F 157 ALA F 168 1 12 HELIX 18 18 PRO F 172 ASP F 181 1 10 HELIX 19 19 THR F 183 LYS F 199 1 17 HELIX 20 20 SER F 202 GLU F 213 1 12 LINK C LYS A 174 N MSE A 175 1555 1555 1.33 LINK C MSE A 175 N ILE A 176 1555 1555 1.33 LINK C HIS A 193 N MSE A 194 1555 1555 1.33 LINK C MSE A 194 N LEU A 195 1555 1555 1.33 LINK C LYS A 197 N MSE A 198 1555 1555 1.33 LINK C MSE A 198 N LYS A 199 1555 1555 1.32 LINK C LYS B 174 N MSE B 175 1555 1555 1.33 LINK C MSE B 175 N ILE B 176 1555 1555 1.33 LINK C HIS B 193 N MSE B 194 1555 1555 1.33 LINK C MSE B 194 N LEU B 195 1555 1555 1.34 LINK C LYS B 197 N MSE B 198 1555 1555 1.33 LINK C MSE B 198 N LYS B 199 1555 1555 1.32 LINK C LYS E 174 N MSE E 175 1555 1555 1.33 LINK C MSE E 175 N ILE E 176 1555 1555 1.33 LINK C HIS E 193 N MSE E 194 1555 1555 1.33 LINK C MSE E 194 N LEU E 195 1555 1555 1.33 LINK C LYS E 197 N MSE E 198 1555 1555 1.33 LINK C MSE E 198 N LYS E 199 1555 1555 1.33 LINK C LYS F 174 N MSE F 175 1555 1555 1.33 LINK C MSE F 175 N ILE F 176 1555 1555 1.33 LINK C HIS F 193 N MSE F 194 1555 1555 1.33 LINK C MSE F 194 N LEU F 195 1555 1555 1.33 LINK C LYS F 197 N MSE F 198 1555 1555 1.33 LINK C MSE F 198 N LYS F 199 1555 1555 1.32 SITE 1 AC1 2 ARG F 161 HOH F 342 SITE 1 AC2 1 ARG A 161 SITE 1 AC3 3 PRO B 158 ARG B 161 HOH B 329 SITE 1 AC4 8 SER F 185 LYS F 188 HOH F 325 HOH F 326 SITE 2 AC4 8 DC G 5 DC G 6 HOH H 50 HOH H 52 SITE 1 AC5 7 SER A 185 LYS A 188 HOH A 312 HOH C 27 SITE 2 AC5 7 HOH C 52 DC D 25 DC D 26 SITE 1 AC6 8 SER B 185 LYS B 188 HOH B 325 HOH B 334 SITE 2 AC6 8 HOH B 341 DC C 6 HOH D 53 HOH D 63 SITE 1 AC7 8 SER E 185 LYS E 188 HOH E 323 HOH E 324 SITE 2 AC7 8 HOH G 30 HOH G 51 DC H 25 DC H 26 SITE 1 AC8 2 PRO E 158 ARG E 161 SITE 1 AC9 1 ARG A 178 SITE 1 BC1 1 ARG B 178 SITE 1 BC2 1 ARG E 178 SITE 1 BC3 1 ARG F 178 CRYST1 76.890 52.570 84.610 90.00 90.00 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013006 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011819 0.00000