HEADER TRANSFERASE 21-APR-05 1ZGH TITLE METHIONYL-TRNA FORMYLTRANSFERASE FROM CLOSTRIDIUM THERMOCELLUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONYL-TRNA FORMYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 203119; SOURCE 4 STRAIN: ATCC 27405; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-15G KEYWDS METHIONYL-TRNA FORMYLTRANSFERASE, SOUTHEAST COLLABORATORY FOR KEYWDS 2 STRUCTURAL GENOMICS, CLOSTRIDIUM THERMOCELLUM, PSI, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, SECSG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.YANG,I.KATAEVA,H.XU,M.ZHAO,J.CHANG,Z.LIU,L.CHEN,W.TEMPEL,J.HABEL, AUTHOR 2 W.ZHOU,D.LEE,D.LIN,S.CHANG,W.B.ARENDALL III,J.S.RICHARDSON, AUTHOR 3 D.C.RICHARDSON,J.P.ROSE,B.WANG,SOUTHEAST COLLABORATORY FOR AUTHOR 4 STRUCTURAL GENOMICS (SECSG) REVDAT 5 30-OCT-24 1ZGH 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 1ZGH 1 REMARK REVDAT 3 13-JUL-11 1ZGH 1 VERSN REVDAT 2 24-FEB-09 1ZGH 1 VERSN REVDAT 1 03-MAY-05 1ZGH 0 SPRSDE 03-MAY-05 1ZGH 1XG9 JRNL AUTH H.YANG,I.KATAEVA,H.XU,M.ZHAO,J.CHANG,Z.LIU,L.CHEN,W.TEMPEL, JRNL AUTH 2 J.HABEL,W.ZHOU,D.LEE,D.LIN,S.CHANG,W.B.ARENDALL III, JRNL AUTH 3 J.S.RICHARDSON,D.C.RICHARDSON,J.P.ROSE,B.WANG, JRNL AUTH 4 SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS JRNL TITL METHIONYL-TRNA FORMYLTRANSFERASE FROM CLOSTRIDIUM JRNL TITL 2 THERMOCELLUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.924 REMARK 3 FREE R VALUE TEST SET COUNT : 1222 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1687 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.2140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1809 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13200 REMARK 3 B22 (A**2) : -0.13200 REMARK 3 B33 (A**2) : 0.26400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.361 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1850 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1696 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2501 ; 1.429 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3942 ; 0.816 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 6.434 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;32.597 ;24.458 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 329 ;12.092 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;18.467 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 276 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2033 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 377 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 280 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1527 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 894 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1020 ; 0.078 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 46 ; 0.127 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.224 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.201 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.134 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1267 ; 1.266 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 459 ; 0.263 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1838 ; 1.429 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1536 ; 0.640 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 799 ; 2.571 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1533 ; 0.741 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 663 ; 3.618 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2406 ; 1.594 ; 4.500 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 226 REMARK 3 ORIGIN FOR THE GROUP (A): 33.3120 27.7720 31.6850 REMARK 3 T TENSOR REMARK 3 T11: -0.1195 T22: -0.0147 REMARK 3 T33: -0.0149 T12: -0.0019 REMARK 3 T13: 0.0125 T23: -0.0809 REMARK 3 L TENSOR REMARK 3 L11: 2.3432 L22: 1.1020 REMARK 3 L33: 1.6793 L12: 0.7518 REMARK 3 L13: 1.4324 L23: 0.5919 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: 0.4368 S13: -0.1970 REMARK 3 S21: -0.1504 S22: 0.0586 S23: 0.0705 REMARK 3 S31: 0.1719 S32: 0.0216 S33: -0.0619 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; ARP/WARP,MOLPROBITY WERE REMARK 3 ALSO USED IN REFINEMENT REMARK 4 REMARK 4 1ZGH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27555 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAS REMARK 200 SOFTWARE USED: SOLVE 2.03, RESOLVE 2.03 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5M AMONIUM SULFATE, 0.1M SODIUM REMARK 280 CITRATE, PH 5.6, MODIFIED MICROBATCH, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.69800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.69800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.13500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.69800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.69800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.13500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.69800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.69800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.13500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.69800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.69800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.13500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S).AUTHOR STATES THAT THE REMARK 300 BIOLOGICAL UNIT IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -29 REMARK 465 GLY A -28 REMARK 465 SER A -27 REMARK 465 SER A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 GLY A -17 REMARK 465 LEU A -16 REMARK 465 VAL A -15 REMARK 465 PRO A -14 REMARK 465 ARG A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 GLN A -10 REMARK 465 SER A -9 REMARK 465 THR A -8 REMARK 465 SER A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 LYS A -4 REMARK 465 LYS A -3 REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 ASP A 227 REMARK 465 GLU A 228 REMARK 465 ASN A 229 REMARK 465 GLU A 230 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 18 CD CE NZ REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 LYS A 26 CE NZ REMARK 470 GLU A 49 CD OE1 OE2 REMARK 470 LYS A 62 CE NZ REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 LYS A 97 CD CE NZ REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 GLU A 158 CD OE1 OE2 REMARK 470 ARG A 164 CD NE CZ NH1 NH2 REMARK 470 LYS A 166 CD CE NZ REMARK 470 LYS A 180 CD CE NZ REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 9 135.06 84.55 REMARK 500 LEU A 38 72.96 -101.03 REMARK 500 MSE A 75 37.09 -83.99 REMARK 500 SER A 85 54.84 34.11 REMARK 500 PHE A 116 174.27 179.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 242 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 243 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 244 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 245 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 247 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CTH-2336 RELATED DB: TARGETDB DBREF 1ZGH A 1 230 GB 48859327 ZP_00313263 1 230 SEQADV 1ZGH MSE A -29 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH GLY A -28 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH SER A -27 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH SER A -26 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH HIS A -25 GB 48859327 EXPRESSION TAG SEQADV 1ZGH HIS A -24 GB 48859327 EXPRESSION TAG SEQADV 1ZGH HIS A -23 GB 48859327 EXPRESSION TAG SEQADV 1ZGH HIS A -22 GB 48859327 EXPRESSION TAG SEQADV 1ZGH HIS A -21 GB 48859327 EXPRESSION TAG SEQADV 1ZGH HIS A -20 GB 48859327 EXPRESSION TAG SEQADV 1ZGH SER A -19 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH SER A -18 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH GLY A -17 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH LEU A -16 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH VAL A -15 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH PRO A -14 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH ARG A -13 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH GLY A -12 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH SER A -11 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH GLN A -10 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH SER A -9 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH THR A -8 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH SER A -7 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH LEU A -6 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH TYR A -5 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH LYS A -4 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH LYS A -3 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH ALA A -2 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH GLY A -1 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH LEU A 0 GB 48859327 CLONING ARTIFACT SEQADV 1ZGH MSE A 1 GB 48859327 MET 1 MODIFIED RESIDUE SEQADV 1ZGH MSE A 75 GB 48859327 MET 75 MODIFIED RESIDUE SEQADV 1ZGH MSE A 131 GB 48859327 MET 131 MODIFIED RESIDUE SEQADV 1ZGH MSE A 141 GB 48859327 MET 141 MODIFIED RESIDUE SEQADV 1ZGH MSE A 187 GB 48859327 MET 187 MODIFIED RESIDUE SEQADV 1ZGH MSE A 212 GB 48859327 MET 212 MODIFIED RESIDUE SEQRES 1 A 260 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 260 LEU VAL PRO ARG GLY SER GLN SER THR SER LEU TYR LYS SEQRES 3 A 260 LYS ALA GLY LEU MSE ASN ILE ILE ILE ALA THR THR LYS SEQRES 4 A 260 SER TRP ASN ILE LYS ASN ALA GLN LYS PHE LYS LYS GLU SEQRES 5 A 260 ASN GLU SER LYS TYR ASN THR THR ILE ILE THR ASN LYS SEQRES 6 A 260 ASP GLU LEU THR PHE GLU LYS VAL LYS LEU ILE ASN PRO SEQRES 7 A 260 GLU TYR ILE LEU PHE PRO HIS TRP SER TRP ILE ILE PRO SEQRES 8 A 260 LYS GLU ILE PHE GLU ASN PHE THR CYS VAL VAL PHE HIS SEQRES 9 A 260 MSE THR ASP LEU PRO PHE GLY ARG GLY GLY SER PRO LEU SEQRES 10 A 260 GLN ASN LEU ILE GLU ARG GLY ILE LYS LYS THR LYS ILE SEQRES 11 A 260 SER ALA ILE LYS VAL ASP GLY GLY ILE ASP THR GLY ASP SEQRES 12 A 260 ILE PHE PHE LYS ARG ASP LEU ASP LEU TYR GLY THR ALA SEQRES 13 A 260 GLU GLU ILE PHE MSE ARG ALA SER LYS ILE ILE PHE ASN SEQRES 14 A 260 ASP MSE ILE PRO GLU LEU LEU THR LYS ARG PRO VAL PRO SEQRES 15 A 260 GLN LYS GLN GLU GLY GLU ALA THR VAL PHE GLN ARG ARG SEQRES 16 A 260 LYS PRO GLU GLN SER GLU ILE SER PRO ASP PHE ASP LEU SEQRES 17 A 260 GLU LYS ILE TYR ASP TYR ILE ARG MSE LEU ASP GLY GLU SEQRES 18 A 260 GLY TYR PRO ARG ALA PHE ILE LYS TYR GLY LYS TYR ARG SEQRES 19 A 260 LEU GLU PHE SER ARG ALA SER MSE LYS ASN GLY LYS ILE SEQRES 20 A 260 ILE ALA ASP VAL GLU ILE ILE GLU GLY ASP GLU ASN GLU MODRES 1ZGH MSE A 1 MET SELENOMETHIONINE MODRES 1ZGH MSE A 75 MET SELENOMETHIONINE MODRES 1ZGH MSE A 131 MET SELENOMETHIONINE MODRES 1ZGH MSE A 141 MET SELENOMETHIONINE MODRES 1ZGH MSE A 187 MET SELENOMETHIONINE MODRES 1ZGH MSE A 212 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 75 8 HET MSE A 131 8 HET MSE A 141 8 HET MSE A 187 8 HET MSE A 212 8 HET UNX A 231 1 HET UNX A 232 1 HET UNX A 233 1 HET UNX A 234 1 HET UNX A 235 1 HET UNX A 236 1 HET UNX A 237 1 HET UNX A 238 1 HET UNX A 239 1 HET UNX A 240 1 HET UNX A 241 1 HET UNX A 242 1 HET UNX A 243 1 HET UNX A 244 1 HET UNX A 245 1 HET UNX A 246 1 HET UNX A 247 1 HETNAM MSE SELENOMETHIONINE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 UNX 17(X) FORMUL 19 HOH *47(H2 O) HELIX 1 1 LYS A 9 ASN A 23 1 15 HELIX 2 2 ASN A 34 LEU A 38 5 5 HELIX 3 3 THR A 39 ASN A 47 1 9 HELIX 4 4 PRO A 61 GLU A 66 1 6 HELIX 5 5 SER A 85 ARG A 93 1 9 HELIX 6 6 THR A 125 ASP A 140 1 16 HELIX 7 7 ASP A 140 ARG A 149 1 10 HELIX 8 8 LYS A 166 GLU A 171 5 6 HELIX 9 9 ASP A 177 LEU A 188 1 12 SHEET 1 A 6 TYR A 27 ILE A 32 0 SHEET 2 A 6 MSE A 1 ALA A 6 1 N ILE A 5 O ILE A 32 SHEET 3 A 6 TYR A 50 PHE A 53 1 O LEU A 52 N ILE A 4 SHEET 4 A 6 CYS A 70 HIS A 74 1 O VAL A 71 N ILE A 51 SHEET 5 A 6 LYS A 97 LYS A 104 -1 O SER A 101 N HIS A 74 SHEET 6 A 6 ILE A 114 ASP A 121 -1 O ARG A 118 N ILE A 100 SHEET 1 B 2 ARG A 82 GLY A 83 0 SHEET 2 B 2 VAL A 161 PHE A 162 1 O PHE A 162 N ARG A 82 SHEET 1 C 3 PHE A 197 TYR A 200 0 SHEET 2 C 3 TYR A 203 LYS A 213 -1 O LEU A 205 N ILE A 198 SHEET 3 C 3 LYS A 216 ILE A 224 -1 O ASP A 220 N SER A 208 LINK C LEU A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ASN A 2 1555 1555 1.33 LINK C HIS A 74 N MSE A 75 1555 1555 1.33 LINK C MSE A 75 N THR A 76 1555 1555 1.33 LINK C PHE A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N ARG A 132 1555 1555 1.33 LINK C ASP A 140 N MSE A 141 1555 1555 1.33 LINK C MSE A 141 N ILE A 142 1555 1555 1.33 LINK C ARG A 186 N MSE A 187 1555 1555 1.33 LINK C MSE A 187 N LEU A 188 1555 1555 1.34 LINK C SER A 211 N MSE A 212 1555 1555 1.32 LINK C MSE A 212 N LYS A 213 1555 1555 1.33 CISPEP 1 LEU A 78 PRO A 79 0 8.43 SITE 1 AC1 2 GLU A 128 UNX A 241 SITE 1 AC2 2 LYS A 9 TYR A 193 SITE 1 AC3 1 LYS A 35 SITE 1 AC4 2 GLY A 192 ARG A 195 SITE 1 AC5 3 GLY A 124 GLU A 128 TYR A 182 SITE 1 AC6 6 THR A 125 ILE A 185 ARG A 186 ASP A 189 SITE 2 AC6 6 ARG A 209 ALA A 210 SITE 1 AC7 3 ARG A 132 GLU A 179 UNX A 241 SITE 1 AC8 4 ASN A 12 PRO A 54 SER A 134 ILE A 137 SITE 1 AC9 2 ILE A 218 HOH A 278 SITE 1 BC1 3 TRP A 11 ASN A 12 HIS A 55 SITE 1 BC2 3 ARG A 132 UNX A 231 UNX A 237 SITE 1 BC3 4 LYS A 14 MSE A 131 ASN A 214 HOH A 257 SITE 1 BC4 3 LYS A 199 GLY A 201 TYR A 203 SITE 1 BC5 2 PHE A 73 ILE A 137 SITE 1 BC6 3 GLY A 215 ILE A 224 GLU A 225 SITE 1 BC7 1 LYS A 117 SITE 1 BC8 2 LYS A 99 ASP A 119 CRYST1 85.396 85.396 104.270 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011700 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009600 0.00000