HEADER TRANSCRIPTION/RNA 22-APR-05 1ZH5 TITLE STRUCTURAL BASIS FOR RECOGNITION OF UUUOH 3'-TERMINII OF NASCENT RNA TITLE 2 POL III TRANSCRIPTS BY LA AUTOANTIGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*UP*GP*CP*UP*GP*UP*UP*UP*U)-3'; COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LUPUS LA PROTEIN; COMPND 7 CHAIN: A, B; COMPND 8 FRAGMENT: N-TERMINAL DOMAIN (RESIDUES 1-194); COMPND 9 SYNONYM: SJOGREN SYNDROME TYPE B ANTIGEN, SS-B, LA RIBONUCLEOPROTEIN, COMPND 10 LA AUTOANTIGEN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 5 ORGANISM_COMMON: HUMAN; SOURCE 6 ORGANISM_TAXID: 9606; SOURCE 7 GENE: SSB; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION/RNA, TRANSCRIPTION-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.TEPLOVA,Y.R.YUAN,S.ILIN,L.MALININA,A.T.PHAN,A.TEPLOV,D.J.PATEL REVDAT 4 16-OCT-24 1ZH5 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1ZH5 1 VERSN REVDAT 2 24-FEB-09 1ZH5 1 VERSN REVDAT 1 17-JAN-06 1ZH5 0 JRNL AUTH M.TEPLOVA,Y.R.YUAN,A.T.PHAN,L.MALININA,S.ILIN,A.TEPLOV, JRNL AUTH 2 D.J.PATEL JRNL TITL STRUCTURAL BASIS FOR RECOGNITION AND SEQUESTRATION OF JRNL TITL 2 UUU(OH) 3' TEMINI OF NASCENT RNA POLYMERASE III TRANSCRIPTS JRNL TITL 3 BY LA, A RHEUMATIC DISEASE AUTOANTIGEN. JRNL REF MOL.CELL V. 21 75 2006 JRNL REFN ISSN 1097-2765 JRNL PMID 16387655 JRNL DOI 10.1016/J.MOLCEL.2005.10.027 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 40918 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2192 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2943 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3050 REMARK 3 NUCLEIC ACID ATOMS : 366 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 455 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.914 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3530 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4826 ; 1.681 ; 2.112 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 367 ; 6.037 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;37.831 ;25.033 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 620 ;13.404 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.754 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 544 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2478 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1228 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2329 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 283 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.183 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1942 ; 0.910 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3001 ; 1.377 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1916 ; 2.167 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1825 ; 3.266 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): 58.6822 -21.9858 -41.7795 REMARK 3 T TENSOR REMARK 3 T11: -0.0652 T22: -0.0551 REMARK 3 T33: -0.0379 T12: -0.0028 REMARK 3 T13: -0.0047 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.4356 L22: 2.0770 REMARK 3 L33: 2.4255 L12: -0.3842 REMARK 3 L13: -0.6445 L23: -0.2559 REMARK 3 S TENSOR REMARK 3 S11: -0.0733 S12: -0.0099 S13: -0.1197 REMARK 3 S21: 0.0896 S22: 0.0165 S23: -0.0037 REMARK 3 S31: 0.0801 S32: 0.0114 S33: 0.0568 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 189 REMARK 3 ORIGIN FOR THE GROUP (A): 60.6824 3.0083 -39.5119 REMARK 3 T TENSOR REMARK 3 T11: -0.0487 T22: -0.0700 REMARK 3 T33: -0.0272 T12: -0.0099 REMARK 3 T13: 0.0020 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 2.2560 L22: 1.5820 REMARK 3 L33: 2.0463 L12: 0.2054 REMARK 3 L13: -0.9411 L23: 0.1268 REMARK 3 S TENSOR REMARK 3 S11: 0.1042 S12: -0.0705 S13: 0.1462 REMARK 3 S21: -0.0438 S22: 0.0541 S23: -0.1820 REMARK 3 S31: -0.2696 S32: 0.1427 S33: -0.1583 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5820 17.4302 -45.1746 REMARK 3 T TENSOR REMARK 3 T11: -0.0450 T22: -0.0478 REMARK 3 T33: -0.0469 T12: -0.0022 REMARK 3 T13: 0.0052 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.6115 L22: 1.8311 REMARK 3 L33: 2.6953 L12: -0.0806 REMARK 3 L13: 0.4461 L23: 0.1746 REMARK 3 S TENSOR REMARK 3 S11: -0.0872 S12: -0.0465 S13: 0.0585 REMARK 3 S21: 0.0617 S22: 0.0246 S23: 0.0416 REMARK 3 S31: -0.1607 S32: -0.0438 S33: 0.0626 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 100 B 189 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1880 -7.4518 -44.0297 REMARK 3 T TENSOR REMARK 3 T11: -0.0434 T22: -0.0818 REMARK 3 T33: -0.0071 T12: -0.0053 REMARK 3 T13: -0.0125 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 2.3854 L22: 1.3763 REMARK 3 L33: 3.6358 L12: 0.0502 REMARK 3 L13: 1.6588 L23: -0.5958 REMARK 3 S TENSOR REMARK 3 S11: 0.1500 S12: 0.0008 S13: -0.2106 REMARK 3 S21: -0.1071 S22: 0.0961 S23: 0.1619 REMARK 3 S31: 0.3847 S32: -0.1393 S33: -0.2461 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 9 REMARK 3 RESIDUE RANGE : D 1 D 9 REMARK 3 ORIGIN FOR THE GROUP (A): 40.9898 -2.1759 -48.1384 REMARK 3 T TENSOR REMARK 3 T11: -0.0049 T22: 0.0824 REMARK 3 T33: -0.0226 T12: 0.0182 REMARK 3 T13: -0.0092 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.4286 L22: 0.2319 REMARK 3 L33: 0.0003 L12: -0.2563 REMARK 3 L13: -0.0148 L23: 0.0074 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: 0.2975 S13: 0.0272 REMARK 3 S21: -0.0375 S22: -0.0310 S23: 0.0169 REMARK 3 S31: -0.0292 S32: 0.0206 S33: 0.0409 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032716. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-05; 26-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X25; X25 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1000; 0.9798, 0.9795, 0.9611 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : MIRRORS; MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CBASS REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42919 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.49600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, LITHIUM SULFATE, POTASSIUM REMARK 280 CHLORIDE, SODIUM ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 78.10450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.51500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 78.10450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.51500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 ASN A 4 REMARK 465 ALA A 190 REMARK 465 LYS A 191 REMARK 465 LYS A 192 REMARK 465 ASN A 193 REMARK 465 GLU A 194 REMARK 465 SER B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 ASN B 4 REMARK 465 GLY B 5 REMARK 465 ALA B 190 REMARK 465 LYS B 191 REMARK 465 LYS B 192 REMARK 465 ASN B 193 REMARK 465 GLU B 194 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 603 O HOH A 608 2.08 REMARK 500 OE1 GLU B 70 O HOH B 660 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G C 2 N3 - C4 - C5 ANGL. DEV. = -3.1 DEGREES REMARK 500 U C 7 N1 - C1' - C2' ANGL. DEV. = 8.1 DEGREES REMARK 500 U C 7 N1 - C2 - O2 ANGL. DEV. = 5.2 DEGREES REMARK 500 U C 7 N3 - C2 - O2 ANGL. DEV. = -4.4 DEGREES REMARK 500 U C 7 C3' - O3' - P ANGL. DEV. = 11.2 DEGREES REMARK 500 U D 1 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 G D 5 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 U D 6 C2' - C3' - O3' ANGL. DEV. = -16.9 DEGREES REMARK 500 U D 6 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 U D 6 C3' - O3' - P ANGL. DEV. = 15.4 DEGREES REMARK 500 U D 9 C5 - C4 - O4 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 29 -50.17 -128.90 REMARK 500 ASP A 43 84.94 -158.71 REMARK 500 LYS A 176 -114.97 52.67 REMARK 500 ASP B 43 51.12 -146.30 REMARK 500 LYS B 176 -111.86 61.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YTY RELATED DB: PDB REMARK 900 THE SAME COMPLEX STRUCTURE DETERMINED AT 2.3 A RESOLUTION DBREF 1ZH5 A 1 194 UNP P05455 LA_HUMAN 1 194 DBREF 1ZH5 B 1 194 UNP P05455 LA_HUMAN 1 194 DBREF 1ZH5 C 1 9 PDB 1ZH5 1ZH5 1 9 DBREF 1ZH5 D 1 9 PDB 1ZH5 1ZH5 1 9 SEQADV 1ZH5 SER A 0 UNP P05455 CLONING ARTIFACT SEQADV 1ZH5 MSE A 1 UNP P05455 MET 1 MODIFIED RESIDUE SEQADV 1ZH5 MSE A 10 UNP P05455 MET 10 MODIFIED RESIDUE SEQADV 1ZH5 MSE A 52 UNP P05455 MET 52 MODIFIED RESIDUE SEQADV 1ZH5 MSE A 80 UNP P05455 MET 80 MODIFIED RESIDUE SEQADV 1ZH5 MSE A 142 UNP P05455 MET 142 MODIFIED RESIDUE SEQADV 1ZH5 SER B 0 UNP P05455 CLONING ARTIFACT SEQADV 1ZH5 MSE B 1 UNP P05455 MET 1 MODIFIED RESIDUE SEQADV 1ZH5 MSE B 10 UNP P05455 MET 10 MODIFIED RESIDUE SEQADV 1ZH5 MSE B 52 UNP P05455 MET 52 MODIFIED RESIDUE SEQADV 1ZH5 MSE B 80 UNP P05455 MET 80 MODIFIED RESIDUE SEQADV 1ZH5 MSE B 142 UNP P05455 MET 142 MODIFIED RESIDUE SEQRES 1 C 9 U G C U G U U U U SEQRES 1 D 9 U G C U G U U U U SEQRES 1 A 195 SER MSE ALA GLU ASN GLY ASP ASN GLU LYS MSE ALA ALA SEQRES 2 A 195 LEU GLU ALA LYS ILE CYS HIS GLN ILE GLU TYR TYR PHE SEQRES 3 A 195 GLY ASP PHE ASN LEU PRO ARG ASP LYS PHE LEU LYS GLU SEQRES 4 A 195 GLN ILE LYS LEU ASP GLU GLY TRP VAL PRO LEU GLU ILE SEQRES 5 A 195 MSE ILE LYS PHE ASN ARG LEU ASN ARG LEU THR THR ASP SEQRES 6 A 195 PHE ASN VAL ILE VAL GLU ALA LEU SER LYS SER LYS ALA SEQRES 7 A 195 GLU LEU MSE GLU ILE SER GLU ASP LYS THR LYS ILE ARG SEQRES 8 A 195 ARG SER PRO SER LYS PRO LEU PRO GLU VAL THR ASP GLU SEQRES 9 A 195 TYR LYS ASN ASP VAL LYS ASN ARG SER VAL TYR ILE LYS SEQRES 10 A 195 GLY PHE PRO THR ASP ALA THR LEU ASP ASP ILE LYS GLU SEQRES 11 A 195 TRP LEU GLU ASP LYS GLY GLN VAL LEU ASN ILE GLN MSE SEQRES 12 A 195 ARG ARG THR LEU HIS LYS ALA PHE LYS GLY SER ILE PHE SEQRES 13 A 195 VAL VAL PHE ASP SER ILE GLU SER ALA LYS LYS PHE VAL SEQRES 14 A 195 GLU THR PRO GLY GLN LYS TYR LYS GLU THR ASP LEU LEU SEQRES 15 A 195 ILE LEU PHE LYS ASP ASP TYR PHE ALA LYS LYS ASN GLU SEQRES 1 B 195 SER MSE ALA GLU ASN GLY ASP ASN GLU LYS MSE ALA ALA SEQRES 2 B 195 LEU GLU ALA LYS ILE CYS HIS GLN ILE GLU TYR TYR PHE SEQRES 3 B 195 GLY ASP PHE ASN LEU PRO ARG ASP LYS PHE LEU LYS GLU SEQRES 4 B 195 GLN ILE LYS LEU ASP GLU GLY TRP VAL PRO LEU GLU ILE SEQRES 5 B 195 MSE ILE LYS PHE ASN ARG LEU ASN ARG LEU THR THR ASP SEQRES 6 B 195 PHE ASN VAL ILE VAL GLU ALA LEU SER LYS SER LYS ALA SEQRES 7 B 195 GLU LEU MSE GLU ILE SER GLU ASP LYS THR LYS ILE ARG SEQRES 8 B 195 ARG SER PRO SER LYS PRO LEU PRO GLU VAL THR ASP GLU SEQRES 9 B 195 TYR LYS ASN ASP VAL LYS ASN ARG SER VAL TYR ILE LYS SEQRES 10 B 195 GLY PHE PRO THR ASP ALA THR LEU ASP ASP ILE LYS GLU SEQRES 11 B 195 TRP LEU GLU ASP LYS GLY GLN VAL LEU ASN ILE GLN MSE SEQRES 12 B 195 ARG ARG THR LEU HIS LYS ALA PHE LYS GLY SER ILE PHE SEQRES 13 B 195 VAL VAL PHE ASP SER ILE GLU SER ALA LYS LYS PHE VAL SEQRES 14 B 195 GLU THR PRO GLY GLN LYS TYR LYS GLU THR ASP LEU LEU SEQRES 15 B 195 ILE LEU PHE LYS ASP ASP TYR PHE ALA LYS LYS ASN GLU MODRES 1ZH5 MSE A 10 MET SELENOMETHIONINE MODRES 1ZH5 MSE A 52 MET SELENOMETHIONINE MODRES 1ZH5 MSE A 80 MET SELENOMETHIONINE MODRES 1ZH5 MSE A 142 MET SELENOMETHIONINE MODRES 1ZH5 MSE B 10 MET SELENOMETHIONINE MODRES 1ZH5 MSE B 52 MET SELENOMETHIONINE MODRES 1ZH5 MSE B 80 MET SELENOMETHIONINE MODRES 1ZH5 MSE B 142 MET SELENOMETHIONINE HET MSE A 10 8 HET MSE A 52 8 HET MSE A 80 8 HET MSE A 142 8 HET MSE B 10 8 HET MSE B 52 8 HET MSE B 80 8 HET MSE B 142 8 HET SO4 A 501 5 HET SO4 A 503 5 HET SO4 B 502 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 3 MSE 8(C5 H11 N O2 SE) FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *455(H2 O) HELIX 1 1 GLY A 5 PHE A 25 1 21 HELIX 2 2 ASN A 29 ARG A 32 5 4 HELIX 3 3 ASP A 33 LYS A 41 1 9 HELIX 4 4 LEU A 49 ILE A 53 1 5 HELIX 5 5 PHE A 55 THR A 62 1 8 HELIX 6 6 ASP A 64 LYS A 74 1 11 HELIX 7 7 THR A 101 ASN A 110 1 10 HELIX 8 8 THR A 123 GLU A 132 1 10 HELIX 9 9 SER A 160 GLU A 169 1 10 HELIX 10 10 ASP A 186 TYR A 188 5 3 HELIX 11 11 ASP B 6 PHE B 25 1 20 HELIX 12 12 ASN B 29 ARG B 32 5 4 HELIX 13 13 ASP B 33 LYS B 41 1 9 HELIX 14 14 LEU B 49 ILE B 53 1 5 HELIX 15 15 PHE B 55 THR B 62 1 8 HELIX 16 16 ASP B 64 LYS B 74 1 11 HELIX 17 17 THR B 101 ASN B 110 1 10 HELIX 18 18 THR B 123 GLU B 132 1 10 HELIX 19 19 SER B 160 GLU B 169 1 10 HELIX 20 20 ASP B 186 TYR B 188 5 3 SHEET 1 A 3 VAL A 47 PRO A 48 0 SHEET 2 A 3 LYS A 88 ARG A 91 -1 O ILE A 89 N VAL A 47 SHEET 3 A 3 MSE A 80 ILE A 82 -1 N GLU A 81 O ARG A 90 SHEET 1 B 4 VAL A 137 ARG A 144 0 SHEET 2 B 4 PHE A 150 PHE A 158 -1 O VAL A 157 N LEU A 138 SHEET 3 B 4 SER A 112 LYS A 116 -1 N ILE A 115 O ILE A 154 SHEET 4 B 4 LEU A 181 PHE A 184 -1 O LEU A 183 N TYR A 114 SHEET 1 C 2 LYS A 174 TYR A 175 0 SHEET 2 C 2 THR A 178 ASP A 179 -1 O THR A 178 N TYR A 175 SHEET 1 D 3 VAL B 47 PRO B 48 0 SHEET 2 D 3 LYS B 88 ARG B 91 -1 O ILE B 89 N VAL B 47 SHEET 3 D 3 MSE B 80 ILE B 82 -1 N GLU B 81 O ARG B 90 SHEET 1 E 4 VAL B 137 ARG B 144 0 SHEET 2 E 4 PHE B 150 PHE B 158 -1 O VAL B 157 N LEU B 138 SHEET 3 E 4 SER B 112 LYS B 116 -1 N VAL B 113 O VAL B 156 SHEET 4 E 4 LEU B 181 PHE B 184 -1 O LEU B 183 N TYR B 114 SHEET 1 F 2 LYS B 174 TYR B 175 0 SHEET 2 F 2 THR B 178 ASP B 179 -1 O THR B 178 N TYR B 175 LINK C LYS A 9 N MSE A 10 1555 1555 1.33 LINK C MSE A 10 N ALA A 11 1555 1555 1.33 LINK C ILE A 51 N MSE A 52 1555 1555 1.33 LINK C MSE A 52 N ILE A 53 1555 1555 1.33 LINK C LEU A 79 N MSE A 80 1555 1555 1.33 LINK C MSE A 80 N GLU A 81 1555 1555 1.33 LINK C GLN A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N ARG A 143 1555 1555 1.34 LINK C LYS B 9 N MSE B 10 1555 1555 1.33 LINK C MSE B 10 N ALA B 11 1555 1555 1.33 LINK C ILE B 51 N MSE B 52 1555 1555 1.33 LINK C MSE B 52 N ILE B 53 1555 1555 1.33 LINK C LEU B 79 N MSE B 80 1555 1555 1.34 LINK C MSE B 80 N GLU B 81 1555 1555 1.34 LINK C GLN B 141 N MSE B 142 1555 1555 1.33 LINK C MSE B 142 N ARG B 143 1555 1555 1.34 SITE 1 AC1 4 HIS A 19 LYS A 128 HOH A 548 HOH A 609 SITE 1 AC2 5 LYS B 16 HIS B 19 LYS B 128 HOH B 525 SITE 2 AC2 5 HOH B 607 SITE 1 AC3 7 TYR A 114 LYS A 116 ARG A 143 LYS A 151 SITE 2 AC3 7 SER A 153 HOH A 519 HOH A 638 CRYST1 156.209 55.030 57.782 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006402 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018172 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017306 0.00000