data_1ZMA # _entry.id 1ZMA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1ZMA RCSB RCSB032886 WWPDB D_1000032886 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC80531 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ZMA _pdbx_database_status.recvd_initial_deposition_date 2005-05-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, Y.' 1 'Hatzos, C.' 2 'Abdullah, J.' 3 'Collart, F.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title 'The Crystal Structure of the Bacterocin Transport Accessory Protein from Streptococcus pneumoniae' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kim, Y.' 1 primary 'Hatzos, C.' 2 primary 'Abdullah, J.' 3 primary 'Collart, F.' 4 primary 'Joachimiak, A.' 5 # _cell.entry_id 1ZMA _cell.length_a 27.006 _cell.length_b 69.658 _cell.length_c 29.621 _cell.angle_alpha 90.00 _cell.angle_beta 112.27 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZMA _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'bacterocin transport accessory protein' 13247.632 1 ? ? ? ? 2 non-polymer syn 'FORMIC ACID' 46.025 1 ? ? ? ? 3 water nat water 18.015 253 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)EQFLDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDL QAFRSRYGIPTVPGFVHITDGQINVRCDSS(MSE)SAQEIKDFAGL ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMEQFLDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFR SRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFAGL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC80531 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 GLU n 1 6 GLN n 1 7 PHE n 1 8 LEU n 1 9 ASP n 1 10 ASN n 1 11 ILE n 1 12 LYS n 1 13 ASP n 1 14 LEU n 1 15 GLU n 1 16 VAL n 1 17 THR n 1 18 THR n 1 19 VAL n 1 20 VAL n 1 21 ARG n 1 22 ALA n 1 23 GLN n 1 24 GLU n 1 25 ALA n 1 26 LEU n 1 27 ASP n 1 28 LYS n 1 29 LYS n 1 30 GLU n 1 31 THR n 1 32 ALA n 1 33 THR n 1 34 PHE n 1 35 PHE n 1 36 ILE n 1 37 GLY n 1 38 ARG n 1 39 LYS n 1 40 THR n 1 41 CYS n 1 42 PRO n 1 43 TYR n 1 44 CYS n 1 45 ARG n 1 46 LYS n 1 47 PHE n 1 48 ALA n 1 49 GLY n 1 50 THR n 1 51 LEU n 1 52 SER n 1 53 GLY n 1 54 VAL n 1 55 VAL n 1 56 ALA n 1 57 GLU n 1 58 THR n 1 59 LYS n 1 60 ALA n 1 61 HIS n 1 62 ILE n 1 63 TYR n 1 64 PHE n 1 65 ILE n 1 66 ASN n 1 67 SER n 1 68 GLU n 1 69 GLU n 1 70 PRO n 1 71 SER n 1 72 GLN n 1 73 LEU n 1 74 ASN n 1 75 ASP n 1 76 LEU n 1 77 GLN n 1 78 ALA n 1 79 PHE n 1 80 ARG n 1 81 SER n 1 82 ARG n 1 83 TYR n 1 84 GLY n 1 85 ILE n 1 86 PRO n 1 87 THR n 1 88 VAL n 1 89 PRO n 1 90 GLY n 1 91 PHE n 1 92 VAL n 1 93 HIS n 1 94 ILE n 1 95 THR n 1 96 ASP n 1 97 GLY n 1 98 GLN n 1 99 ILE n 1 100 ASN n 1 101 VAL n 1 102 ARG n 1 103 CYS n 1 104 ASP n 1 105 SER n 1 106 SER n 1 107 MSE n 1 108 SER n 1 109 ALA n 1 110 GLN n 1 111 GLU n 1 112 ILE n 1 113 LYS n 1 114 ASP n 1 115 PHE n 1 116 ALA n 1 117 GLY n 1 118 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Streptococcus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus pneumoniae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1313 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21DE3 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8DP51_STRR6 _struct_ref.pdbx_db_accession Q8DP51 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEQFLDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRY GIPTVPGFVHITDGQINVRCDSSMSAQEIKDFAGL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1ZMA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 118 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8DP51 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 115 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 115 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1ZMA SER A 1 ? UNP Q8DP51 ? ? 'CLONING ARTIFACT' -2 1 1 1ZMA ASN A 2 ? UNP Q8DP51 ? ? 'CLONING ARTIFACT' -1 2 1 1ZMA ALA A 3 ? UNP Q8DP51 ? ? 'CLONING ARTIFACT' 0 3 1 1ZMA MSE A 4 ? UNP Q8DP51 MET 1 'MODIFIED RESIDUE' 1 4 1 1ZMA MSE A 107 ? UNP Q8DP51 MET 104 'MODIFIED RESIDUE' 104 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1ZMA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.0 _exptl_crystal.density_percent_sol 37 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'PEG 3350, HEPES, Sodium Chloride, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC-3 _diffrn_detector.pdbx_collection_date 2005-04-08 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97926 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97926 # _reflns.entry_id 1ZMA _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.25 _reflns.d_resolution_low 25.5 _reflns.number_all 25134 _reflns.number_obs 24991 _reflns.percent_possible_obs 89.8 _reflns.pdbx_Rmerge_I_obs 0.071 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.25 _reflns_shell.d_res_low 1.29 _reflns_shell.percent_possible_all 51.6 _reflns_shell.Rmerge_I_obs 0.225 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.8 _reflns_shell.pdbx_redundancy 4.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1ZMA _refine.ls_number_reflns_obs 22451 _refine.ls_number_reflns_all 22451 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.5 _refine.ls_d_res_high 1.25 _refine.ls_percent_reflns_obs 89.70 _refine.ls_R_factor_obs 0.13138 _refine.ls_R_factor_all 0.13138 _refine.ls_R_factor_R_work 0.12748 _refine.ls_R_factor_R_free 0.16686 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 2516 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.978 _refine.correlation_coeff_Fo_to_Fc_free 0.962 _refine.B_iso_mean 9.835 _refine.aniso_B[1][1] -0.42 _refine.aniso_B[2][2] -0.46 _refine.aniso_B[3][3] 0.32 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.74 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS FOR THE REFINEMENT.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.062 _refine.pdbx_overall_ESU_R_Free 0.055 _refine.overall_SU_ML 0.031 _refine.overall_SU_B 1.533 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1092 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 256 _refine_hist.number_atoms_total 1348 _refine_hist.d_res_high 1.25 _refine_hist.d_res_low 25.5 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 1129 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 998 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.434 1.949 ? 1547 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.863 3.000 ? 2358 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.060 5.000 ? 156 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.537 25.000 ? 54 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.846 15.000 ? 210 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.110 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.090 0.200 ? 166 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1363 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 236 'X-RAY DIFFRACTION' ? r_nbd_refined 0.258 0.200 ? 286 'X-RAY DIFFRACTION' ? r_nbd_other 0.197 0.200 ? 1134 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.083 0.200 ? 655 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.219 0.200 ? 206 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.252 0.200 ? 16 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.312 0.200 ? 44 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.208 0.200 ? 58 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.249 1.500 ? 885 'X-RAY DIFFRACTION' ? r_mcbond_other 0.512 1.500 ? 282 'X-RAY DIFFRACTION' ? r_mcangle_it 1.556 2.000 ? 1168 'X-RAY DIFFRACTION' ? r_scbond_it 2.466 3.000 ? 465 'X-RAY DIFFRACTION' ? r_scangle_it 3.277 4.500 ? 379 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.100 3.000 ? 2463 'X-RAY DIFFRACTION' ? r_sphericity_free 6.077 3.000 ? 253 'X-RAY DIFFRACTION' ? r_sphericity_bonded 2.849 3.000 ? 2093 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.253 _refine_ls_shell.d_res_low 1.286 _refine_ls_shell.number_reflns_R_work 923 _refine_ls_shell.R_factor_R_work 0.154 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.216 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 110 _refine_ls_shell.number_reflns_obs 923 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1ZMA _struct.title 'Crystal Structure of the Bacterocin Transport Accessory Protein from Streptococcus pneumoniae' _struct.pdbx_descriptor 'bacterocin transport accessory protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ZMA _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text ;alpha-beta-alpha-sandwich, bacterocin transport, Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, TRANSPORT PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 1 ? ILE A 11 ? SER A -2 ILE A 8 1 ? 11 HELX_P HELX_P2 2 THR A 18 ? LYS A 28 ? THR A 15 LYS A 25 1 ? 11 HELX_P HELX_P3 3 CYS A 41 ? LYS A 59 ? CYS A 38 LYS A 56 1 ? 19 HELX_P HELX_P4 4 GLU A 69 ? SER A 71 ? GLU A 66 SER A 68 5 ? 3 HELX_P HELX_P5 5 GLN A 72 ? GLY A 84 ? GLN A 69 GLY A 81 1 ? 13 HELX_P HELX_P6 6 SER A 108 ? GLY A 117 ? SER A 105 GLY A 114 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 3 C ? ? ? 1_555 A MSE 4 N A ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.334 ? covale2 covale ? ? A ALA 3 C ? ? ? 1_555 A MSE 4 N B ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.321 ? covale3 covale ? ? A MSE 4 C A ? ? 1_555 A GLU 5 N ? ? A MSE 1 A GLU 2 1_555 ? ? ? ? ? ? ? 1.322 ? covale4 covale ? ? A MSE 4 C B ? ? 1_555 A GLU 5 N ? ? A MSE 1 A GLU 2 1_555 ? ? ? ? ? ? ? 1.332 ? covale5 covale ? ? A SER 106 C ? ? ? 1_555 A MSE 107 N ? ? A SER 103 A MSE 104 1_555 ? ? ? ? ? ? ? 1.331 ? covale6 covale ? ? A MSE 107 C ? ? ? 1_555 A SER 108 N ? ? A MSE 104 A SER 105 1_555 ? ? ? ? ? ? ? 1.322 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id VAL _struct_mon_prot_cis.label_seq_id 88 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id VAL _struct_mon_prot_cis.auth_seq_id 85 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 89 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 86 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 6.65 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 15 ? VAL A 16 ? GLU A 12 VAL A 13 A 2 TYR A 63 ? ASN A 66 ? TYR A 60 ASN A 63 A 3 ALA A 32 ? GLY A 37 ? ALA A 29 GLY A 34 A 4 GLY A 90 ? THR A 95 ? GLY A 87 THR A 92 A 5 GLN A 98 ? ARG A 102 ? GLN A 95 ARG A 99 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 15 ? N GLU A 12 O PHE A 64 ? O PHE A 61 A 2 3 O TYR A 63 ? O TYR A 60 N PHE A 35 ? N PHE A 32 A 3 4 N PHE A 34 ? N PHE A 31 O VAL A 92 ? O VAL A 89 A 4 5 N HIS A 93 ? N HIS A 90 O ASN A 100 ? O ASN A 97 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE FMT A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 SER A 1 ? SER A -2 . ? 1_555 ? 2 AC1 7 ASN A 2 ? ASN A -1 . ? 1_555 ? 3 AC1 7 ALA A 3 ? ALA A 0 . ? 1_555 ? 4 AC1 7 THR A 58 ? THR A 55 . ? 1_454 ? 5 AC1 7 HOH C . ? HOH A 595 . ? 1_454 ? 6 AC1 7 HOH C . ? HOH A 646 . ? 1_454 ? 7 AC1 7 HOH C . ? HOH A 652 . ? 1_555 ? # _database_PDB_matrix.entry_id 1ZMA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1ZMA _atom_sites.fract_transf_matrix[1][1] 0.037029 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.015161 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014356 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.036480 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 -2 SER SER A . n A 1 2 ASN 2 -1 -1 ASN ASN A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 GLU 5 2 2 GLU GLU A . n A 1 6 GLN 6 3 3 GLN GLN A . n A 1 7 PHE 7 4 4 PHE PHE A . n A 1 8 LEU 8 5 5 LEU LEU A . n A 1 9 ASP 9 6 6 ASP ASP A . n A 1 10 ASN 10 7 7 ASN ASN A . n A 1 11 ILE 11 8 8 ILE ILE A . n A 1 12 LYS 12 9 9 LYS LYS A . n A 1 13 ASP 13 10 10 ASP ASP A . n A 1 14 LEU 14 11 11 LEU LEU A . n A 1 15 GLU 15 12 12 GLU GLU A . n A 1 16 VAL 16 13 13 VAL VAL A . n A 1 17 THR 17 14 14 THR THR A . n A 1 18 THR 18 15 15 THR THR A . n A 1 19 VAL 19 16 16 VAL VAL A . n A 1 20 VAL 20 17 17 VAL VAL A . n A 1 21 ARG 21 18 18 ARG ARG A . n A 1 22 ALA 22 19 19 ALA ALA A . n A 1 23 GLN 23 20 20 GLN GLN A . n A 1 24 GLU 24 21 21 GLU GLU A . n A 1 25 ALA 25 22 22 ALA ALA A . n A 1 26 LEU 26 23 23 LEU LEU A . n A 1 27 ASP 27 24 24 ASP ASP A . n A 1 28 LYS 28 25 25 LYS LYS A . n A 1 29 LYS 29 26 26 LYS LYS A . n A 1 30 GLU 30 27 27 GLU GLU A . n A 1 31 THR 31 28 28 THR THR A . n A 1 32 ALA 32 29 29 ALA ALA A . n A 1 33 THR 33 30 30 THR THR A . n A 1 34 PHE 34 31 31 PHE PHE A . n A 1 35 PHE 35 32 32 PHE PHE A . n A 1 36 ILE 36 33 33 ILE ILE A . n A 1 37 GLY 37 34 34 GLY GLY A . n A 1 38 ARG 38 35 35 ARG ARG A . n A 1 39 LYS 39 36 36 LYS LYS A . n A 1 40 THR 40 37 37 THR THR A . n A 1 41 CYS 41 38 38 CYS CYS A . n A 1 42 PRO 42 39 39 PRO PRO A . n A 1 43 TYR 43 40 40 TYR TYR A . n A 1 44 CYS 44 41 41 CYS CYS A . n A 1 45 ARG 45 42 42 ARG ARG A . n A 1 46 LYS 46 43 43 LYS LYS A . n A 1 47 PHE 47 44 44 PHE PHE A . n A 1 48 ALA 48 45 45 ALA ALA A . n A 1 49 GLY 49 46 46 GLY GLY A . n A 1 50 THR 50 47 47 THR THR A . n A 1 51 LEU 51 48 48 LEU LEU A . n A 1 52 SER 52 49 49 SER SER A . n A 1 53 GLY 53 50 50 GLY GLY A . n A 1 54 VAL 54 51 51 VAL VAL A . n A 1 55 VAL 55 52 52 VAL VAL A . n A 1 56 ALA 56 53 53 ALA ALA A . n A 1 57 GLU 57 54 54 GLU GLU A . n A 1 58 THR 58 55 55 THR THR A . n A 1 59 LYS 59 56 56 LYS LYS A . n A 1 60 ALA 60 57 57 ALA ALA A . n A 1 61 HIS 61 58 58 HIS HIS A . n A 1 62 ILE 62 59 59 ILE ILE A . n A 1 63 TYR 63 60 60 TYR TYR A . n A 1 64 PHE 64 61 61 PHE PHE A . n A 1 65 ILE 65 62 62 ILE ILE A . n A 1 66 ASN 66 63 63 ASN ASN A . n A 1 67 SER 67 64 64 SER SER A . n A 1 68 GLU 68 65 65 GLU GLU A . n A 1 69 GLU 69 66 66 GLU GLU A . n A 1 70 PRO 70 67 67 PRO PRO A . n A 1 71 SER 71 68 68 SER SER A . n A 1 72 GLN 72 69 69 GLN GLN A . n A 1 73 LEU 73 70 70 LEU LEU A . n A 1 74 ASN 74 71 71 ASN ASN A . n A 1 75 ASP 75 72 72 ASP ASP A . n A 1 76 LEU 76 73 73 LEU LEU A . n A 1 77 GLN 77 74 74 GLN GLN A . n A 1 78 ALA 78 75 75 ALA ALA A . n A 1 79 PHE 79 76 76 PHE PHE A . n A 1 80 ARG 80 77 77 ARG ARG A . n A 1 81 SER 81 78 78 SER SER A . n A 1 82 ARG 82 79 79 ARG ARG A . n A 1 83 TYR 83 80 80 TYR TYR A . n A 1 84 GLY 84 81 81 GLY GLY A . n A 1 85 ILE 85 82 82 ILE ILE A . n A 1 86 PRO 86 83 83 PRO PRO A . n A 1 87 THR 87 84 84 THR THR A . n A 1 88 VAL 88 85 85 VAL VAL A . n A 1 89 PRO 89 86 86 PRO PRO A . n A 1 90 GLY 90 87 87 GLY GLY A . n A 1 91 PHE 91 88 88 PHE PHE A . n A 1 92 VAL 92 89 89 VAL VAL A . n A 1 93 HIS 93 90 90 HIS HIS A . n A 1 94 ILE 94 91 91 ILE ILE A . n A 1 95 THR 95 92 92 THR THR A . n A 1 96 ASP 96 93 93 ASP ASP A . n A 1 97 GLY 97 94 94 GLY GLY A . n A 1 98 GLN 98 95 95 GLN GLN A . n A 1 99 ILE 99 96 96 ILE ILE A . n A 1 100 ASN 100 97 97 ASN ASN A . n A 1 101 VAL 101 98 98 VAL VAL A . n A 1 102 ARG 102 99 99 ARG ARG A . n A 1 103 CYS 103 100 100 CYS CYS A . n A 1 104 ASP 104 101 101 ASP ASP A . n A 1 105 SER 105 102 102 SER SER A . n A 1 106 SER 106 103 103 SER SER A . n A 1 107 MSE 107 104 104 MSE MSE A . n A 1 108 SER 108 105 105 SER SER A . n A 1 109 ALA 109 106 106 ALA ALA A . n A 1 110 GLN 110 107 107 GLN GLN A . n A 1 111 GLU 111 108 108 GLU GLU A . n A 1 112 ILE 112 109 109 ILE ILE A . n A 1 113 LYS 113 110 110 LYS LYS A . n A 1 114 ASP 114 111 111 ASP ASP A . n A 1 115 PHE 115 112 112 PHE PHE A . n A 1 116 ALA 116 113 113 ALA ALA A . n A 1 117 GLY 117 114 114 GLY GLY A . n A 1 118 LEU 118 115 115 LEU LEU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMT 1 401 401 FMT FMT A . C 3 HOH 1 402 1 HOH HOH A . C 3 HOH 2 403 2 HOH HOH A . C 3 HOH 3 404 3 HOH HOH A . C 3 HOH 4 405 4 HOH HOH A . C 3 HOH 5 406 5 HOH HOH A . C 3 HOH 6 407 6 HOH HOH A . C 3 HOH 7 408 7 HOH HOH A . C 3 HOH 8 409 8 HOH HOH A . C 3 HOH 9 410 9 HOH HOH A . C 3 HOH 10 411 10 HOH HOH A . C 3 HOH 11 412 11 HOH HOH A . C 3 HOH 12 413 12 HOH HOH A . C 3 HOH 13 414 13 HOH HOH A . C 3 HOH 14 415 14 HOH HOH A . C 3 HOH 15 416 15 HOH HOH A . C 3 HOH 16 417 16 HOH HOH A . C 3 HOH 17 418 17 HOH HOH A . C 3 HOH 18 419 18 HOH HOH A . C 3 HOH 19 420 19 HOH HOH A . C 3 HOH 20 421 20 HOH HOH A . C 3 HOH 21 422 21 HOH HOH A . C 3 HOH 22 423 22 HOH HOH A . C 3 HOH 23 424 23 HOH HOH A . C 3 HOH 24 425 24 HOH HOH A . C 3 HOH 25 426 25 HOH HOH A . C 3 HOH 26 427 26 HOH HOH A . C 3 HOH 27 428 27 HOH HOH A . C 3 HOH 28 429 28 HOH HOH A . C 3 HOH 29 430 29 HOH HOH A . C 3 HOH 30 431 30 HOH HOH A . C 3 HOH 31 432 31 HOH HOH A . C 3 HOH 32 433 32 HOH HOH A . C 3 HOH 33 434 33 HOH HOH A . C 3 HOH 34 435 34 HOH HOH A . C 3 HOH 35 436 35 HOH HOH A . C 3 HOH 36 437 36 HOH HOH A . C 3 HOH 37 438 37 HOH HOH A . C 3 HOH 38 439 38 HOH HOH A . C 3 HOH 39 440 39 HOH HOH A . C 3 HOH 40 441 40 HOH HOH A . C 3 HOH 41 442 41 HOH HOH A . C 3 HOH 42 443 42 HOH HOH A . C 3 HOH 43 444 43 HOH HOH A . C 3 HOH 44 445 44 HOH HOH A . C 3 HOH 45 446 45 HOH HOH A . C 3 HOH 46 447 46 HOH HOH A . C 3 HOH 47 448 47 HOH HOH A . C 3 HOH 48 449 48 HOH HOH A . C 3 HOH 49 450 49 HOH HOH A . C 3 HOH 50 451 50 HOH HOH A . C 3 HOH 51 452 51 HOH HOH A . C 3 HOH 52 453 52 HOH HOH A . C 3 HOH 53 454 53 HOH HOH A . C 3 HOH 54 455 54 HOH HOH A . C 3 HOH 55 456 55 HOH HOH A . C 3 HOH 56 457 56 HOH HOH A . C 3 HOH 57 458 57 HOH HOH A . C 3 HOH 58 459 58 HOH HOH A . C 3 HOH 59 460 59 HOH HOH A . C 3 HOH 60 461 60 HOH HOH A . C 3 HOH 61 462 61 HOH HOH A . C 3 HOH 62 463 62 HOH HOH A . C 3 HOH 63 464 63 HOH HOH A . C 3 HOH 64 465 64 HOH HOH A . C 3 HOH 65 466 65 HOH HOH A . C 3 HOH 66 467 66 HOH HOH A . C 3 HOH 67 468 67 HOH HOH A . C 3 HOH 68 469 68 HOH HOH A . C 3 HOH 69 470 69 HOH HOH A . C 3 HOH 70 471 70 HOH HOH A . C 3 HOH 71 472 71 HOH HOH A . C 3 HOH 72 473 72 HOH HOH A . C 3 HOH 73 474 73 HOH HOH A . C 3 HOH 74 475 74 HOH HOH A . C 3 HOH 75 476 75 HOH HOH A . C 3 HOH 76 477 76 HOH HOH A . C 3 HOH 77 478 77 HOH HOH A . C 3 HOH 78 479 78 HOH HOH A . C 3 HOH 79 480 79 HOH HOH A . C 3 HOH 80 481 80 HOH HOH A . C 3 HOH 81 482 81 HOH HOH A . C 3 HOH 82 483 82 HOH HOH A . C 3 HOH 83 484 83 HOH HOH A . C 3 HOH 84 485 84 HOH HOH A . C 3 HOH 85 486 85 HOH HOH A . C 3 HOH 86 487 86 HOH HOH A . C 3 HOH 87 488 87 HOH HOH A . C 3 HOH 88 489 88 HOH HOH A . C 3 HOH 89 490 89 HOH HOH A . C 3 HOH 90 491 90 HOH HOH A . C 3 HOH 91 492 91 HOH HOH A . C 3 HOH 92 493 92 HOH HOH A . C 3 HOH 93 494 93 HOH HOH A . C 3 HOH 94 495 94 HOH HOH A . C 3 HOH 95 496 95 HOH HOH A . C 3 HOH 96 497 96 HOH HOH A . C 3 HOH 97 498 97 HOH HOH A . C 3 HOH 98 499 98 HOH HOH A . C 3 HOH 99 500 99 HOH HOH A . C 3 HOH 100 501 100 HOH HOH A . C 3 HOH 101 502 101 HOH HOH A . C 3 HOH 102 503 102 HOH HOH A . C 3 HOH 103 504 103 HOH HOH A . C 3 HOH 104 505 104 HOH HOH A . C 3 HOH 105 506 105 HOH HOH A . C 3 HOH 106 507 106 HOH HOH A . C 3 HOH 107 508 107 HOH HOH A . C 3 HOH 108 509 108 HOH HOH A . C 3 HOH 109 510 109 HOH HOH A . C 3 HOH 110 511 110 HOH HOH A . C 3 HOH 111 512 111 HOH HOH A . C 3 HOH 112 513 112 HOH HOH A . C 3 HOH 113 514 113 HOH HOH A . C 3 HOH 114 515 114 HOH HOH A . C 3 HOH 115 516 115 HOH HOH A . C 3 HOH 116 517 116 HOH HOH A . C 3 HOH 117 518 117 HOH HOH A . C 3 HOH 118 519 118 HOH HOH A . C 3 HOH 119 520 119 HOH HOH A . C 3 HOH 120 521 120 HOH HOH A . C 3 HOH 121 522 121 HOH HOH A . C 3 HOH 122 523 122 HOH HOH A . C 3 HOH 123 524 123 HOH HOH A . C 3 HOH 124 525 124 HOH HOH A . C 3 HOH 125 526 125 HOH HOH A . C 3 HOH 126 527 126 HOH HOH A . C 3 HOH 127 528 127 HOH HOH A . C 3 HOH 128 529 128 HOH HOH A . C 3 HOH 129 530 129 HOH HOH A . C 3 HOH 130 531 130 HOH HOH A . C 3 HOH 131 532 131 HOH HOH A . C 3 HOH 132 533 132 HOH HOH A . C 3 HOH 133 534 133 HOH HOH A . C 3 HOH 134 535 134 HOH HOH A . C 3 HOH 135 536 135 HOH HOH A . C 3 HOH 136 537 136 HOH HOH A . C 3 HOH 137 538 137 HOH HOH A . C 3 HOH 138 539 138 HOH HOH A . C 3 HOH 139 540 139 HOH HOH A . C 3 HOH 140 541 140 HOH HOH A . C 3 HOH 141 542 141 HOH HOH A . C 3 HOH 142 543 142 HOH HOH A . C 3 HOH 143 544 143 HOH HOH A . C 3 HOH 144 545 144 HOH HOH A . C 3 HOH 145 546 145 HOH HOH A . C 3 HOH 146 547 146 HOH HOH A . C 3 HOH 147 548 147 HOH HOH A . C 3 HOH 148 549 148 HOH HOH A . C 3 HOH 149 550 149 HOH HOH A . C 3 HOH 150 551 150 HOH HOH A . C 3 HOH 151 552 151 HOH HOH A . C 3 HOH 152 553 152 HOH HOH A . C 3 HOH 153 554 153 HOH HOH A . C 3 HOH 154 555 154 HOH HOH A . C 3 HOH 155 556 155 HOH HOH A . C 3 HOH 156 557 156 HOH HOH A . C 3 HOH 157 558 157 HOH HOH A . C 3 HOH 158 559 158 HOH HOH A . C 3 HOH 159 560 159 HOH HOH A . C 3 HOH 160 561 160 HOH HOH A . C 3 HOH 161 562 161 HOH HOH A . C 3 HOH 162 563 162 HOH HOH A . C 3 HOH 163 564 163 HOH HOH A . C 3 HOH 164 565 164 HOH HOH A . C 3 HOH 165 566 165 HOH HOH A . C 3 HOH 166 567 166 HOH HOH A . C 3 HOH 167 568 167 HOH HOH A . C 3 HOH 168 569 168 HOH HOH A . C 3 HOH 169 570 169 HOH HOH A . C 3 HOH 170 571 170 HOH HOH A . C 3 HOH 171 572 171 HOH HOH A . C 3 HOH 172 573 172 HOH HOH A . C 3 HOH 173 574 173 HOH HOH A . C 3 HOH 174 575 174 HOH HOH A . C 3 HOH 175 576 175 HOH HOH A . C 3 HOH 176 577 176 HOH HOH A . C 3 HOH 177 578 177 HOH HOH A . C 3 HOH 178 579 178 HOH HOH A . C 3 HOH 179 580 179 HOH HOH A . C 3 HOH 180 581 180 HOH HOH A . C 3 HOH 181 582 181 HOH HOH A . C 3 HOH 182 583 182 HOH HOH A . C 3 HOH 183 584 183 HOH HOH A . C 3 HOH 184 585 184 HOH HOH A . C 3 HOH 185 586 185 HOH HOH A . C 3 HOH 186 587 186 HOH HOH A . C 3 HOH 187 588 187 HOH HOH A . C 3 HOH 188 589 188 HOH HOH A . C 3 HOH 189 590 189 HOH HOH A . C 3 HOH 190 591 190 HOH HOH A . C 3 HOH 191 592 191 HOH HOH A . C 3 HOH 192 593 192 HOH HOH A . C 3 HOH 193 594 193 HOH HOH A . C 3 HOH 194 595 194 HOH HOH A . C 3 HOH 195 596 195 HOH HOH A . C 3 HOH 196 597 196 HOH HOH A . C 3 HOH 197 598 197 HOH HOH A . C 3 HOH 198 599 198 HOH HOH A . C 3 HOH 199 600 199 HOH HOH A . C 3 HOH 200 601 200 HOH HOH A . C 3 HOH 201 602 201 HOH HOH A . C 3 HOH 202 603 202 HOH HOH A . C 3 HOH 203 604 203 HOH HOH A . C 3 HOH 204 605 204 HOH HOH A . C 3 HOH 205 606 205 HOH HOH A . C 3 HOH 206 607 206 HOH HOH A . C 3 HOH 207 608 207 HOH HOH A . C 3 HOH 208 609 208 HOH HOH A . C 3 HOH 209 610 209 HOH HOH A . C 3 HOH 210 611 210 HOH HOH A . C 3 HOH 211 612 211 HOH HOH A . C 3 HOH 212 613 212 HOH HOH A . C 3 HOH 213 614 213 HOH HOH A . C 3 HOH 214 615 214 HOH HOH A . C 3 HOH 215 616 215 HOH HOH A . C 3 HOH 216 617 216 HOH HOH A . C 3 HOH 217 618 217 HOH HOH A . C 3 HOH 218 619 218 HOH HOH A . C 3 HOH 219 620 219 HOH HOH A . C 3 HOH 220 621 220 HOH HOH A . C 3 HOH 221 622 221 HOH HOH A . C 3 HOH 222 623 222 HOH HOH A . C 3 HOH 223 624 223 HOH HOH A . C 3 HOH 224 625 224 HOH HOH A . C 3 HOH 225 626 225 HOH HOH A . C 3 HOH 226 627 226 HOH HOH A . C 3 HOH 227 628 227 HOH HOH A . C 3 HOH 228 629 228 HOH HOH A . C 3 HOH 229 630 229 HOH HOH A . C 3 HOH 230 631 230 HOH HOH A . C 3 HOH 231 632 231 HOH HOH A . C 3 HOH 232 633 232 HOH HOH A . C 3 HOH 233 634 233 HOH HOH A . C 3 HOH 234 635 234 HOH HOH A . C 3 HOH 235 636 235 HOH HOH A . C 3 HOH 236 637 236 HOH HOH A . C 3 HOH 237 638 237 HOH HOH A . C 3 HOH 238 639 238 HOH HOH A . C 3 HOH 239 640 239 HOH HOH A . C 3 HOH 240 641 240 HOH HOH A . C 3 HOH 241 642 241 HOH HOH A . C 3 HOH 242 643 242 HOH HOH A . C 3 HOH 243 644 243 HOH HOH A . C 3 HOH 244 645 244 HOH HOH A . C 3 HOH 245 646 245 HOH HOH A . C 3 HOH 246 647 246 HOH HOH A . C 3 HOH 247 648 247 HOH HOH A . C 3 HOH 248 649 248 HOH HOH A . C 3 HOH 249 650 249 HOH HOH A . C 3 HOH 250 651 250 HOH HOH A . C 3 HOH 251 652 251 HOH HOH A . C 3 HOH 252 653 252 HOH HOH A . C 3 HOH 253 654 253 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 107 A MSE 104 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-06-21 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0000 ? 1 SBC-Collect 'data collection' . ? 2 HKL-2000 'data scaling' . ? 3 HKL-3000 phasing . ? 4 SHELXCD phasing . ? 5 SHELXD phasing . ? 6 SHELXE 'model building' . ? 7 MLPHARE phasing . ? 8 SOLVE phasing . ? 9 RESOLVE phasing . ? 10 ARP/wARP 'model building' . ? 11 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NE2 A GLN 69 ? B O A HOH 633 ? ? 2.01 2 1 NH1 A ARG 99 ? B O A HOH 485 ? ? 2.08 3 1 OD2 A ASP 6 ? B O A HOH 591 ? ? 2.08 4 1 O A HOH 429 ? ? O A HOH 617 ? ? 2.08 5 1 O A HOH 439 ? ? O A HOH 628 ? ? 2.15 6 1 O A HOH 626 ? ? O A HOH 648 ? ? 2.16 7 1 CZ A ARG 99 ? B O A HOH 485 ? ? 2.17 8 1 O A LEU 115 ? ? O A HOH 595 ? ? 2.18 9 1 O A HOH 523 ? ? O A HOH 650 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OD1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ASN _pdbx_validate_symm_contact.auth_seq_id_1 97 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 B _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 502 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_556 _pdbx_validate_symm_contact.dist 1.86 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 99 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 B _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 99 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 B _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 99 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 B _pdbx_validate_rmsd_angle.angle_value 124.55 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 4.25 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 101 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -160.85 _pdbx_validate_torsion.psi 100.38 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FORMIC ACID' FMT 3 water HOH #