data_1ZMI # _entry.id 1ZMI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ZMI pdb_00001zmi 10.2210/pdb1zmi/pdb RCSB RCSB032893 ? ? WWPDB D_1000032893 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1DFN 'Crystal structure of related alpha-defensin' unspecified PDB 1ZMH . unspecified PDB 1ZMK . unspecified PDB 1ZMM . unspecified PDB 1ZMP . unspecified PDB 1ZMQ . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ZMI _pdbx_database_status.recvd_initial_deposition_date 2005-05-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lubkowski, J.' 1 'Prahl, A.' 2 'Lu, W.' 3 # _citation.id primary _citation.title 'Reconstruction of the conserved beta-bulge in mammalian defensins using D-amino acids.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 280 _citation.page_first 32921 _citation.page_last 32929 _citation.year 2005 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15894545 _citation.pdbx_database_id_DOI 10.1074/jbc.M503084200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xie, C.' 1 ? primary 'Prahl, A.' 2 ? primary 'Ericksen, B.' 3 ? primary 'Wu, Z.' 4 ? primary 'Zeng, P.' 5 ? primary 'Li, X.' 6 ? primary 'Lu, W.Y.' 7 ? primary 'Lubkowski, J.' 8 ? primary 'Lu, W.' 9 ? # _cell.entry_id 1ZMI _cell.length_a 71.685 _cell.length_b 71.685 _cell.length_c 54.882 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZMI _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Neutrophil defensin 2' 3395.059 4 ? 'G16(DAL)' ? ? 2 non-polymer syn GLYCEROL 92.094 4 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 4 water nat water 18.015 122 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'CYCRIPACIAGERRY(DAL)TCIYQGRLWAFCC' _entity_poly.pdbx_seq_one_letter_code_can CYCRIPACIAGERRYATCIYQGRLWAFCC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 TYR n 1 3 CYS n 1 4 ARG n 1 5 ILE n 1 6 PRO n 1 7 ALA n 1 8 CYS n 1 9 ILE n 1 10 ALA n 1 11 GLY n 1 12 GLU n 1 13 ARG n 1 14 ARG n 1 15 TYR n 1 16 DAL n 1 17 THR n 1 18 CYS n 1 19 ILE n 1 20 TYR n 1 21 GLN n 1 22 GLY n 1 23 ARG n 1 24 LEU n 1 25 TRP n 1 26 ALA n 1 27 PHE n 1 28 CYS n 1 29 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'DEFA3, DEF3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DEF3_HUMAN _struct_ref.pdbx_db_accession P59666 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code CYCRIPACIAGERRYGTCIYQGRLWAFCC _struct_ref.pdbx_align_begin 66 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ZMI A 1 ? 29 ? P59666 66 ? 94 ? 1 29 2 1 1ZMI B 1 ? 29 ? P59666 66 ? 94 ? 1 29 3 1 1ZMI C 1 ? 29 ? P59666 66 ? 94 ? 1 29 4 1 1ZMI D 1 ? 29 ? P59666 66 ? 94 ? 1 29 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1ZMI DAL A 16 ? UNP P59666 GLY 81 'engineered mutation' 16 1 2 1ZMI DAL B 16 ? UNP P59666 GLY 81 'engineered mutation' 16 2 3 1ZMI DAL C 16 ? UNP P59666 GLY 81 'engineered mutation' 16 3 4 1ZMI DAL D 16 ? UNP P59666 GLY 81 'engineered mutation' 16 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.entry_id 1ZMI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.00 _exptl_crystal.density_percent_sol 58.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'lithium sulfate, PEG8000, VAPOR DIFFUSION, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2004-06-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 1ZMI _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.15 _reflns.d_resolution_low 30.0 _reflns.number_all 57187 _reflns.number_obs 57187 _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.09 _reflns.pdbx_netI_over_sigmaI 17.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.15 _reflns_shell.d_res_low 1.22 _reflns_shell.percent_possible_all 90.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.513 _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.pdbx_redundancy 4.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1ZMI _refine.ls_number_reflns_obs 54227 _refine.ls_number_reflns_all 54227 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 12.00 _refine.ls_d_res_high 1.15 _refine.ls_percent_reflns_obs 98.53 _refine.ls_R_factor_obs 0.16876 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.16807 _refine.ls_R_factor_R_free 0.18202 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 2891 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.960 _refine.B_iso_mean 14.858 _refine.aniso_B[1][1] -0.16 _refine.aniso_B[2][2] -0.16 _refine.aniso_B[3][3] 0.24 _refine.aniso_B[1][2] -0.08 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'Based on monomer of HNP-3 (PDB code 1DFN)' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.031 _refine.pdbx_overall_ESU_R_Free 0.030 _refine.overall_SU_ML 0.017 _refine.overall_SU_B 0.774 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 936 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 39 _refine_hist.number_atoms_solvent 122 _refine_hist.number_atoms_total 1097 _refine_hist.d_res_high 1.15 _refine_hist.d_res_low 12.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.022 ? 1006 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 891 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.890 1.964 ? 1361 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.840 3.000 ? 2032 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 8.025 5.000 ? 112 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 19.987 18.182 ? 44 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.241 15.000 ? 145 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.648 15.000 ? 16 'X-RAY DIFFRACTION' ? r_chiral_restr 0.413 0.200 ? 129 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 1080 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.000 0.020 ? 260 'X-RAY DIFFRACTION' ? r_nbd_refined 0.197 0.300 ? 137 'X-RAY DIFFRACTION' ? r_nbd_other 0.239 0.300 ? 813 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.201 0.500 ? 424 'X-RAY DIFFRACTION' ? r_nbtor_other 0.089 0.500 ? 637 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.223 0.500 ? 158 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.060 0.500 ? 1 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.300 0.300 ? 9 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.285 0.300 ? 105 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.194 0.500 ? 31 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.198 2.000 ? 594 'X-RAY DIFFRACTION' ? r_mcbond_other 1.116 2.000 ? 244 'X-RAY DIFFRACTION' ? r_mcangle_it 2.887 3.000 ? 914 'X-RAY DIFFRACTION' ? r_scbond_it 3.020 2.000 ? 498 'X-RAY DIFFRACTION' ? r_scangle_it 3.785 3.000 ? 447 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.659 3.000 ? 2243 'X-RAY DIFFRACTION' ? r_sphericity_free 9.570 3.000 ? 122 'X-RAY DIFFRACTION' ? r_sphericity_bonded 3.721 3.000 ? 1865 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 1.150 _refine_ls_shell.d_res_low 1.212 _refine_ls_shell.number_reflns_R_work 7245 _refine_ls_shell.R_factor_R_work 0.184 _refine_ls_shell.percent_reflns_obs 92.23 _refine_ls_shell.R_factor_R_free 0.207 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 411 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1ZMI _struct.title 'Crystal structure of human alpha_defensin-2 (variant GLY16->D-ALA), P 32 2 1 space group )' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ZMI _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' _struct_keywords.text 'ALPHA-DEFENSIN, ANTIMICROBIAL, D-AMINO ACID SUBSTITUTION, ANTIMICROBIAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 2 ? K N N 2 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 4 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 1 SG ? ? ? 1_555 A CYS 29 SG ? ? A CYS 1 A CYS 29 1_555 ? ? ? ? ? ? ? 2.116 ? ? disulf2 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 18 SG ? ? A CYS 3 A CYS 18 1_555 ? ? ? ? ? ? ? 2.053 ? ? disulf3 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 28 SG ? ? A CYS 8 A CYS 28 1_555 ? ? ? ? ? ? ? 2.048 ? ? disulf4 disulf ? ? B CYS 1 SG ? ? ? 1_555 B CYS 29 SG ? ? B CYS 1 B CYS 29 1_555 ? ? ? ? ? ? ? 2.117 ? ? disulf5 disulf ? ? B CYS 3 SG ? ? ? 1_555 B CYS 18 SG ? ? B CYS 3 B CYS 18 1_555 ? ? ? ? ? ? ? 2.062 ? ? disulf6 disulf ? ? B CYS 8 SG ? ? ? 1_555 B CYS 28 SG ? ? B CYS 8 B CYS 28 1_555 ? ? ? ? ? ? ? 2.055 ? ? disulf7 disulf ? ? C CYS 1 SG ? ? ? 1_555 C CYS 29 SG ? ? C CYS 1 C CYS 29 1_555 ? ? ? ? ? ? ? 2.078 ? ? disulf8 disulf ? ? C CYS 3 SG ? ? ? 1_555 C CYS 18 SG ? ? C CYS 3 C CYS 18 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf9 disulf ? ? C CYS 8 SG ? ? ? 1_555 C CYS 28 SG ? ? C CYS 8 C CYS 28 1_555 ? ? ? ? ? ? ? 2.022 ? ? disulf10 disulf ? ? D CYS 1 SG ? ? ? 1_555 D CYS 29 SG ? ? D CYS 1 D CYS 29 1_555 ? ? ? ? ? ? ? 2.074 ? ? disulf11 disulf ? ? D CYS 3 SG ? ? ? 1_555 D CYS 18 SG ? ? D CYS 3 D CYS 18 1_555 ? ? ? ? ? ? ? 2.062 ? ? disulf12 disulf ? ? D CYS 8 SG ? ? ? 1_555 D CYS 28 SG ? ? D CYS 8 D CYS 28 1_555 ? ? ? ? ? ? ? 2.056 ? ? covale1 covale both ? A TYR 15 C ? ? ? 1_555 A DAL 16 N ? ? A TYR 15 A DAL 16 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale2 covale both ? A DAL 16 C ? ? ? 1_555 A THR 17 N ? ? A DAL 16 A THR 17 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale3 covale both ? B TYR 15 C ? ? ? 1_555 B DAL 16 N ? ? B TYR 15 B DAL 16 1_555 ? ? ? ? ? ? ? 1.312 ? ? covale4 covale both ? B DAL 16 C ? ? ? 1_555 B THR 17 N ? ? B DAL 16 B THR 17 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale5 covale both ? C TYR 15 C ? ? ? 1_555 C DAL 16 N ? ? C TYR 15 C DAL 16 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? C DAL 16 C ? ? ? 1_555 C THR 17 N ? ? C DAL 16 C THR 17 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale7 covale both ? D TYR 15 C ? ? ? 1_555 D DAL 16 N ? ? D TYR 15 D DAL 16 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale8 covale both ? D DAL 16 C ? ? ? 1_555 D THR 17 N ? ? D DAL 16 D THR 17 1_555 ? ? ? ? ? ? ? 1.318 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 5 A . ? ILE 5 A PRO 6 A ? PRO 6 A 1 6.06 2 ILE 5 B . ? ILE 5 B PRO 6 B ? PRO 6 B 1 2.75 3 ILE 5 C . ? ILE 5 C PRO 6 C ? PRO 6 C 1 7.02 4 ILE 5 D . ? ILE 5 D PRO 6 D ? PRO 6 D 1 5.18 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 2 ? ARG A 4 ? TYR A 2 ARG A 4 A 2 ARG A 23 ? CYS A 29 ? ARG A 23 CYS A 29 A 3 ARG A 13 ? TYR A 20 ? ARG A 13 TYR A 20 A 4 ARG B 13 ? TYR B 20 ? ARG B 13 TYR B 20 A 5 ARG B 23 ? CYS B 29 ? ARG B 23 CYS B 29 A 6 TYR B 2 ? ARG B 4 ? TYR B 2 ARG B 4 B 1 TYR C 2 ? ARG C 4 ? TYR C 2 ARG C 4 B 2 ARG C 23 ? CYS C 29 ? ARG C 23 CYS C 29 B 3 ARG C 13 ? TYR C 20 ? ARG C 13 TYR C 20 B 4 ARG D 13 ? TYR D 20 ? ARG D 13 TYR D 20 B 5 ARG D 23 ? CYS D 29 ? ARG D 23 CYS D 29 B 6 TYR D 2 ? ARG D 4 ? TYR D 2 ARG D 4 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 2 ? N TYR A 2 O CYS A 28 ? O CYS A 28 A 2 3 O PHE A 27 ? O PHE A 27 N TYR A 15 ? N TYR A 15 A 3 4 N THR A 17 ? N THR A 17 O ILE B 19 ? O ILE B 19 A 4 5 N ARG B 13 ? N ARG B 13 O CYS B 29 ? O CYS B 29 A 5 6 O CYS B 28 ? O CYS B 28 N TYR B 2 ? N TYR B 2 B 1 2 N TYR C 2 ? N TYR C 2 O CYS C 28 ? O CYS C 28 B 2 3 O PHE C 27 ? O PHE C 27 N TYR C 15 ? N TYR C 15 B 3 4 N THR C 17 ? N THR C 17 O ILE D 19 ? O ILE D 19 B 4 5 N ARG D 13 ? N ARG D 13 O CYS D 29 ? O CYS D 29 B 5 6 O CYS D 28 ? O CYS D 28 N TYR D 2 ? N TYR D 2 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B SO4 401 ? 5 'BINDING SITE FOR RESIDUE SO4 B 401' AC2 Software B SO4 402 ? 5 'BINDING SITE FOR RESIDUE SO4 B 402' AC3 Software B SO4 403 ? 8 'BINDING SITE FOR RESIDUE SO4 B 403' AC4 Software A GOL 501 ? 10 'BINDING SITE FOR RESIDUE GOL A 501' AC5 Software B GOL 502 ? 5 'BINDING SITE FOR RESIDUE GOL B 502' AC6 Software B GOL 503 ? 6 'BINDING SITE FOR RESIDUE GOL B 503' AC7 Software A GOL 507 ? 6 'BINDING SITE FOR RESIDUE GOL A 507' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ARG B 13 ? ARG B 13 . ? 1_555 ? 2 AC1 5 CYS B 29 ? CYS B 29 . ? 1_555 ? 3 AC1 5 HOH M . ? HOH B 137 . ? 1_555 ? 4 AC1 5 HOH M . ? HOH B 167 . ? 1_555 ? 5 AC1 5 ARG C 14 ? ARG C 14 . ? 4_556 ? 6 AC2 5 GLY B 11 ? GLY B 11 . ? 1_555 ? 7 AC2 5 HOH M . ? HOH B 138 . ? 1_555 ? 8 AC2 5 HOH M . ? HOH B 219 . ? 1_555 ? 9 AC2 5 ARG C 14 ? ARG C 14 . ? 4_556 ? 10 AC2 5 THR C 17 ? THR C 17 . ? 4_556 ? 11 AC3 8 ILE B 5 ? ILE B 5 . ? 2_664 ? 12 AC3 8 ARG B 23 ? ARG B 23 . ? 2_664 ? 13 AC3 8 HOH M . ? HOH B 112 . ? 1_555 ? 14 AC3 8 HOH M . ? HOH B 114 . ? 1_555 ? 15 AC3 8 HOH M . ? HOH B 128 . ? 1_555 ? 16 AC3 8 HOH M . ? HOH B 140 . ? 1_555 ? 17 AC3 8 HOH M . ? HOH B 227 . ? 1_555 ? 18 AC3 8 HOH M . ? HOH B 228 . ? 1_555 ? 19 AC4 10 CYS A 3 ? CYS A 3 . ? 1_555 ? 20 AC4 10 TRP A 25 ? TRP A 25 . ? 1_555 ? 21 AC4 10 HOH L . ? HOH A 102 . ? 1_555 ? 22 AC4 10 HOH L . ? HOH A 106 . ? 1_555 ? 23 AC4 10 HOH L . ? HOH A 186 . ? 1_555 ? 24 AC4 10 HOH L . ? HOH A 203 . ? 1_555 ? 25 AC4 10 GOL F . ? GOL A 507 . ? 6_555 ? 26 AC4 10 PHE B 27 ? PHE B 27 . ? 1_555 ? 27 AC4 10 ILE C 5 ? ILE C 5 . ? 4_556 ? 28 AC4 10 HOH N . ? HOH C 150 . ? 4_556 ? 29 AC5 5 CYS A 1 ? CYS A 1 . ? 1_555 ? 30 AC5 5 TYR B 2 ? TYR B 2 . ? 1_555 ? 31 AC5 5 CYS B 3 ? CYS B 3 . ? 1_555 ? 32 AC5 5 HOH M . ? HOH B 153 . ? 1_555 ? 33 AC5 5 HOH M . ? HOH B 178 . ? 1_555 ? 34 AC6 6 PRO B 6 ? PRO B 6 . ? 1_555 ? 35 AC6 6 ARG B 14 ? ARG B 14 . ? 1_555 ? 36 AC6 6 LEU B 24 ? LEU B 24 . ? 1_555 ? 37 AC6 6 ALA B 26 ? ALA B 26 . ? 1_555 ? 38 AC6 6 HOH M . ? HOH B 206 . ? 3_565 ? 39 AC6 6 HOH N . ? HOH C 113 . ? 5_566 ? 40 AC7 6 PRO A 6 ? PRO A 6 . ? 1_555 ? 41 AC7 6 ALA A 7 ? ALA A 7 . ? 1_555 ? 42 AC7 6 GOL E . ? GOL A 501 . ? 6_555 ? 43 AC7 6 ILE C 5 ? ILE C 5 . ? 2_554 ? 44 AC7 6 ARG C 23 ? ARG C 23 . ? 2_554 ? 45 AC7 6 TRP C 25 ? TRP C 25 . ? 2_554 ? # _database_PDB_matrix.entry_id 1ZMI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1ZMI _atom_sites.fract_transf_matrix[1][1] 0.013950 _atom_sites.fract_transf_matrix[1][2] 0.008054 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016108 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018221 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 1 1 CYS CYS A . n A 1 2 TYR 2 2 2 TYR TYR A . n A 1 3 CYS 3 3 3 CYS CYS A . n A 1 4 ARG 4 4 4 ARG ARG A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 CYS 8 8 8 CYS CYS A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 DAL 16 16 16 DAL DAL A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 CYS 18 18 18 CYS CYS A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 TRP 25 25 25 TRP TRP A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 CYS 29 29 29 CYS CYS A . n B 1 1 CYS 1 1 1 CYS CYS B . n B 1 2 TYR 2 2 2 TYR TYR B . n B 1 3 CYS 3 3 3 CYS CYS B . n B 1 4 ARG 4 4 4 ARG ARG B . n B 1 5 ILE 5 5 5 ILE ILE B . n B 1 6 PRO 6 6 6 PRO PRO B . n B 1 7 ALA 7 7 7 ALA ALA B . n B 1 8 CYS 8 8 8 CYS CYS B . n B 1 9 ILE 9 9 9 ILE ILE B . n B 1 10 ALA 10 10 10 ALA ALA B . n B 1 11 GLY 11 11 11 GLY GLY B . n B 1 12 GLU 12 12 12 GLU GLU B . n B 1 13 ARG 13 13 13 ARG ARG B . n B 1 14 ARG 14 14 14 ARG ARG B . n B 1 15 TYR 15 15 15 TYR TYR B . n B 1 16 DAL 16 16 16 DAL DAL B . n B 1 17 THR 17 17 17 THR THR B . n B 1 18 CYS 18 18 18 CYS CYS B . n B 1 19 ILE 19 19 19 ILE ILE B . n B 1 20 TYR 20 20 20 TYR TYR B . n B 1 21 GLN 21 21 21 GLN GLN B . n B 1 22 GLY 22 22 22 GLY GLY B . n B 1 23 ARG 23 23 23 ARG ARG B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 TRP 25 25 25 TRP TRP B . n B 1 26 ALA 26 26 26 ALA ALA B . n B 1 27 PHE 27 27 27 PHE PHE B . n B 1 28 CYS 28 28 28 CYS CYS B . n B 1 29 CYS 29 29 29 CYS CYS B . n C 1 1 CYS 1 1 1 CYS CYS C . n C 1 2 TYR 2 2 2 TYR TYR C . n C 1 3 CYS 3 3 3 CYS CYS C . n C 1 4 ARG 4 4 4 ARG ARG C . n C 1 5 ILE 5 5 5 ILE ILE C . n C 1 6 PRO 6 6 6 PRO PRO C . n C 1 7 ALA 7 7 7 ALA ALA C . n C 1 8 CYS 8 8 8 CYS CYS C . n C 1 9 ILE 9 9 9 ILE ILE C . n C 1 10 ALA 10 10 10 ALA ALA C . n C 1 11 GLY 11 11 11 GLY GLY C . n C 1 12 GLU 12 12 12 GLU GLU C . n C 1 13 ARG 13 13 13 ARG ARG C . n C 1 14 ARG 14 14 14 ARG ARG C . n C 1 15 TYR 15 15 15 TYR TYR C . n C 1 16 DAL 16 16 16 DAL DAL C . n C 1 17 THR 17 17 17 THR THR C . n C 1 18 CYS 18 18 18 CYS CYS C . n C 1 19 ILE 19 19 19 ILE ILE C . n C 1 20 TYR 20 20 20 TYR TYR C . n C 1 21 GLN 21 21 21 GLN GLN C . n C 1 22 GLY 22 22 22 GLY GLY C . n C 1 23 ARG 23 23 23 ARG ARG C . n C 1 24 LEU 24 24 24 LEU LEU C . n C 1 25 TRP 25 25 25 TRP TRP C . n C 1 26 ALA 26 26 26 ALA ALA C . n C 1 27 PHE 27 27 27 PHE PHE C . n C 1 28 CYS 28 28 28 CYS CYS C . n C 1 29 CYS 29 29 29 CYS CYS C . n D 1 1 CYS 1 1 1 CYS CYS D . n D 1 2 TYR 2 2 2 TYR TYR D . n D 1 3 CYS 3 3 3 CYS CYS D . n D 1 4 ARG 4 4 4 ARG ARG D . n D 1 5 ILE 5 5 5 ILE ILE D . n D 1 6 PRO 6 6 6 PRO PRO D . n D 1 7 ALA 7 7 7 ALA ALA D . n D 1 8 CYS 8 8 8 CYS CYS D . n D 1 9 ILE 9 9 9 ILE ILE D . n D 1 10 ALA 10 10 10 ALA ALA D . n D 1 11 GLY 11 11 11 GLY GLY D . n D 1 12 GLU 12 12 12 GLU GLU D . n D 1 13 ARG 13 13 13 ARG ARG D . n D 1 14 ARG 14 14 14 ARG ARG D . n D 1 15 TYR 15 15 15 TYR TYR D . n D 1 16 DAL 16 16 16 DAL DAL D . n D 1 17 THR 17 17 17 THR THR D . n D 1 18 CYS 18 18 18 CYS CYS D . n D 1 19 ILE 19 19 19 ILE ILE D . n D 1 20 TYR 20 20 20 TYR TYR D . n D 1 21 GLN 21 21 21 GLN GLN D . n D 1 22 GLY 22 22 22 GLY GLY D . n D 1 23 ARG 23 23 23 ARG ARG D . n D 1 24 LEU 24 24 24 LEU LEU D . n D 1 25 TRP 25 25 25 TRP TRP D . n D 1 26 ALA 26 26 26 ALA ALA D . n D 1 27 PHE 27 27 27 PHE PHE D . n D 1 28 CYS 28 28 28 CYS CYS D . n D 1 29 CYS 29 29 29 CYS CYS D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL 1 501 501 GOL GOL A . F 2 GOL 1 507 507 GOL GOL A . G 3 SO4 1 401 401 SO4 SO4 B . H 3 SO4 1 402 402 SO4 SO4 B . I 3 SO4 1 403 403 SO4 SO4 B . J 2 GOL 1 502 502 GOL GOL B . K 2 GOL 1 503 503 GOL GOL B . L 4 HOH 1 102 102 HOH HOH A . L 4 HOH 2 103 103 HOH HOH A . L 4 HOH 3 105 105 HOH HOH A . L 4 HOH 4 106 106 HOH HOH A . L 4 HOH 5 108 108 HOH HOH A . L 4 HOH 6 120 120 HOH HOH A . L 4 HOH 7 126 126 HOH HOH A . L 4 HOH 8 127 127 HOH HOH A . L 4 HOH 9 147 147 HOH HOH A . L 4 HOH 10 148 148 HOH HOH A . L 4 HOH 11 154 154 HOH HOH A . L 4 HOH 12 161 161 HOH HOH A . L 4 HOH 13 163 163 HOH HOH A . L 4 HOH 14 170 170 HOH HOH A . L 4 HOH 15 176 176 HOH HOH A . L 4 HOH 16 177 177 HOH HOH A . L 4 HOH 17 182 182 HOH HOH A . L 4 HOH 18 186 186 HOH HOH A . L 4 HOH 19 188 188 HOH HOH A . L 4 HOH 20 193 193 HOH HOH A . L 4 HOH 21 197 197 HOH HOH A . L 4 HOH 22 203 203 HOH HOH A . L 4 HOH 23 211 211 HOH HOH A . L 4 HOH 24 214 214 HOH HOH A . L 4 HOH 25 222 222 HOH HOH A . L 4 HOH 26 225 225 HOH HOH A . L 4 HOH 27 226 226 HOH HOH A . L 4 HOH 28 230 230 HOH HOH A . L 4 HOH 29 239 239 HOH HOH A . L 4 HOH 30 244 244 HOH HOH A . M 4 HOH 1 104 104 HOH HOH B . M 4 HOH 2 107 107 HOH HOH B . M 4 HOH 3 111 111 HOH HOH B . M 4 HOH 4 112 112 HOH HOH B . M 4 HOH 5 114 114 HOH HOH B . M 4 HOH 6 116 116 HOH HOH B . M 4 HOH 7 117 117 HOH HOH B . M 4 HOH 8 122 122 HOH HOH B . M 4 HOH 9 124 124 HOH HOH B . M 4 HOH 10 128 128 HOH HOH B . M 4 HOH 11 129 129 HOH HOH B . M 4 HOH 12 130 130 HOH HOH B . M 4 HOH 13 136 136 HOH HOH B . M 4 HOH 14 137 137 HOH HOH B . M 4 HOH 15 138 138 HOH HOH B . M 4 HOH 16 140 140 HOH HOH B . M 4 HOH 17 145 145 HOH HOH B . M 4 HOH 18 146 146 HOH HOH B . M 4 HOH 19 149 149 HOH HOH B . M 4 HOH 20 151 151 HOH HOH B . M 4 HOH 21 152 152 HOH HOH B . M 4 HOH 22 153 153 HOH HOH B . M 4 HOH 23 164 164 HOH HOH B . M 4 HOH 24 165 165 HOH HOH B . M 4 HOH 25 166 166 HOH HOH B . M 4 HOH 26 167 167 HOH HOH B . M 4 HOH 27 171 171 HOH HOH B . M 4 HOH 28 175 175 HOH HOH B . M 4 HOH 29 178 178 HOH HOH B . M 4 HOH 30 206 206 HOH HOH B . M 4 HOH 31 208 208 HOH HOH B . M 4 HOH 32 209 209 HOH HOH B . M 4 HOH 33 210 210 HOH HOH B . M 4 HOH 34 217 217 HOH HOH B . M 4 HOH 35 219 219 HOH HOH B . M 4 HOH 36 221 221 HOH HOH B . M 4 HOH 37 227 227 HOH HOH B . M 4 HOH 38 228 228 HOH HOH B . M 4 HOH 39 232 232 HOH HOH B . M 4 HOH 40 233 233 HOH HOH B . M 4 HOH 41 241 241 HOH HOH B . M 4 HOH 42 243 243 HOH HOH B . N 4 HOH 1 101 101 HOH HOH C . N 4 HOH 2 113 113 HOH HOH C . N 4 HOH 3 115 115 HOH HOH C . N 4 HOH 4 121 121 HOH HOH C . N 4 HOH 5 123 123 HOH HOH C . N 4 HOH 6 131 131 HOH HOH C . N 4 HOH 7 132 132 HOH HOH C . N 4 HOH 8 142 142 HOH HOH C . N 4 HOH 9 143 143 HOH HOH C . N 4 HOH 10 144 144 HOH HOH C . N 4 HOH 11 150 150 HOH HOH C . N 4 HOH 12 158 158 HOH HOH C . N 4 HOH 13 168 168 HOH HOH C . N 4 HOH 14 174 174 HOH HOH C . N 4 HOH 15 184 184 HOH HOH C . N 4 HOH 16 185 185 HOH HOH C . N 4 HOH 17 187 187 HOH HOH C . N 4 HOH 18 192 192 HOH HOH C . N 4 HOH 19 199 199 HOH HOH C . N 4 HOH 20 201 201 HOH HOH C . N 4 HOH 21 215 215 HOH HOH C . N 4 HOH 22 218 218 HOH HOH C . N 4 HOH 23 220 220 HOH HOH C . N 4 HOH 24 224 224 HOH HOH C . N 4 HOH 25 229 229 HOH HOH C . N 4 HOH 26 234 234 HOH HOH C . N 4 HOH 27 236 236 HOH HOH C . N 4 HOH 28 238 238 HOH HOH C . N 4 HOH 29 240 240 HOH HOH C . N 4 HOH 30 242 242 HOH HOH C . O 4 HOH 1 109 109 HOH HOH D . O 4 HOH 2 110 110 HOH HOH D . O 4 HOH 3 125 125 HOH HOH D . O 4 HOH 4 133 133 HOH HOH D . O 4 HOH 5 139 139 HOH HOH D . O 4 HOH 6 141 141 HOH HOH D . O 4 HOH 7 156 156 HOH HOH D . O 4 HOH 8 157 157 HOH HOH D . O 4 HOH 9 160 160 HOH HOH D . O 4 HOH 10 162 162 HOH HOH D . O 4 HOH 11 173 173 HOH HOH D . O 4 HOH 12 179 179 HOH HOH D . O 4 HOH 13 180 180 HOH HOH D . O 4 HOH 14 181 181 HOH HOH D . O 4 HOH 15 202 202 HOH HOH D . O 4 HOH 16 204 204 HOH HOH D . O 4 HOH 17 216 216 HOH HOH D . O 4 HOH 18 231 231 HOH HOH D . O 4 HOH 19 235 235 HOH HOH D . O 4 HOH 20 237 237 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A DAL 16 A DAL 16 ? ALA D-ALANINE 2 B DAL 16 B DAL 16 ? ALA D-ALANINE 3 C DAL 16 C DAL 16 ? ALA D-ALANINE 4 D DAL 16 D DAL 16 ? ALA D-ALANINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 software_defined_assembly PISA octameric 8 4 software_defined_assembly PISA tetrameric 4 5 software_defined_assembly PISA tetrameric 4 6 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,I,J,K,L,M 2 1 C,D,N,O 3 1,2 A,B,E,F,G,H,I,J,K,L,M 3 3,4 C,D,N,O 4 1 A,B,E,F,G,H,I,J,K,L,M 4 4 C,D,N,O 5 1 A,B,E,F,G,H,I,J,K,L,M 5 5 C,D,N,O 6 1 A,B,E,F,G,H,I,J,K,L,M 6 3 C,D,N,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1810 ? 1 MORE -24 ? 1 'SSA (A^2)' 4010 ? 2 'ABSA (A^2)' 1050 ? 2 MORE -24 ? 2 'SSA (A^2)' 4280 ? 3 'ABSA (A^2)' 10020 ? 3 MORE -135 ? 3 'SSA (A^2)' 12270 ? 4 'ABSA (A^2)' 3780 ? 4 MORE -62 ? 4 'SSA (A^2)' 7370 ? 5 'ABSA (A^2)' 3610 ? 5 MORE -57 ? 5 'SSA (A^2)' 7540 ? 6 'ABSA (A^2)' 3570 ? 6 MORE -52 ? 6 'SSA (A^2)' 7570 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 36.5880000000 3 'crystal symmetry operation' 2_554 -y,x-y,z-1/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -18.2940000000 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 54.8820000000 5 'crystal symmetry operation' 5_566 x-y,-y+1,-z+4/3 1.0000000000 0.0000000000 0.0000000000 -35.8425000000 0.0000000000 -1.0000000000 0.0000000000 62.0810310703 0.0000000000 0.0000000000 -1.0000000000 73.1760000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-08-16 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2021-10-20 6 'Structure model' 1 5 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 6 'Structure model' 'Data collection' 8 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site 6 6 'Structure model' chem_comp_atom 7 6 'Structure model' chem_comp_bond 8 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_ref_seq_dif.details' 7 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -12.7495 29.8509 26.3762 -0.0284 -0.0272 -0.0179 -0.0144 0.0060 0.0028 1.7646 3.1093 3.0384 0.2769 0.7832 -1.3167 0.0765 -0.0672 -0.0720 0.0438 -0.0374 0.0925 0.1025 -0.0869 -0.0391 'X-RAY DIFFRACTION' 2 ? refined 19.9121 10.0010 41.8245 -0.0360 -0.0036 0.0093 -0.0145 0.0308 -0.0422 3.6585 2.7275 3.5518 -1.5905 -1.0417 0.8289 -0.1007 0.2469 -0.3560 0.0385 -0.1701 0.2862 0.2184 -0.3021 0.2708 'X-RAY DIFFRACTION' 3 ? refined -0.8245 35.5529 25.7336 -0.0216 -0.0151 -0.0128 -0.0055 -0.0049 -0.0002 1.0248 1.6687 2.9649 -0.7160 -1.0676 1.4211 -0.0080 -0.0465 0.0556 0.0494 0.0507 -0.1038 0.0466 0.1501 -0.0427 'X-RAY DIFFRACTION' 4 ? refined 15.8658 15.9737 51.1493 -0.0422 -0.0291 -0.0229 0.0246 0.0364 -0.0038 3.6638 6.0841 4.1569 -1.7500 -0.7703 -1.7508 -0.1986 0.0437 -0.0553 0.2157 0.0995 0.2664 -0.0622 -0.1182 0.0991 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 1 A 29 A 29 ? 'X-RAY DIFFRACTION' ? 2 2 C 1 C 1 C 29 C 29 ? 'X-RAY DIFFRACTION' ? 3 3 B 1 B 1 B 29 B 29 ? 'X-RAY DIFFRACTION' ? 4 4 D 19 D 19 D 29 D 29 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 MAR345 'data collection' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O C ARG 13 ? ? O C HOH 184 ? ? 1.88 2 1 O B HOH 130 ? ? O B HOH 152 ? ? 2.11 3 1 O C CYS 29 ? ? O C HOH 184 ? ? 2.16 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 186 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 C _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 150 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_556 _pdbx_validate_symm_contact.dist 2.12 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 THR _pdbx_validate_rmsd_bond.auth_seq_id_1 17 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CG2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 THR _pdbx_validate_rmsd_bond.auth_seq_id_2 17 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 B _pdbx_validate_rmsd_bond.bond_value 1.299 _pdbx_validate_rmsd_bond.bond_target_value 1.519 _pdbx_validate_rmsd_bond.bond_deviation -0.220 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.033 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NH1 A ARG 23 ? ? CZ A ARG 23 ? ? NH2 A ARG 23 ? ? 110.73 119.40 -8.67 1.10 N 2 1 NE A ARG 23 ? ? CZ A ARG 23 ? ? NH1 A ARG 23 ? ? 129.27 120.30 8.97 0.50 N 3 1 NE D ARG 23 ? ? CZ D ARG 23 ? ? NH1 D ARG 23 ? ? 116.33 120.30 -3.97 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ALA _pdbx_validate_torsion.auth_asym_id D _pdbx_validate_torsion.auth_seq_id 10 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -36.57 _pdbx_validate_torsion.psi 122.20 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 CYS N N N N 41 CYS CA C N R 42 CYS C C N N 43 CYS O O N N 44 CYS CB C N N 45 CYS SG S N N 46 CYS OXT O N N 47 CYS H H N N 48 CYS H2 H N N 49 CYS HA H N N 50 CYS HB2 H N N 51 CYS HB3 H N N 52 CYS HG H N N 53 CYS HXT H N N 54 DAL N N N N 55 DAL CA C N R 56 DAL CB C N N 57 DAL C C N N 58 DAL O O N N 59 DAL OXT O N N 60 DAL H H N N 61 DAL H2 H N N 62 DAL HA H N N 63 DAL HB1 H N N 64 DAL HB2 H N N 65 DAL HB3 H N N 66 DAL HXT H N N 67 GLN N N N N 68 GLN CA C N S 69 GLN C C N N 70 GLN O O N N 71 GLN CB C N N 72 GLN CG C N N 73 GLN CD C N N 74 GLN OE1 O N N 75 GLN NE2 N N N 76 GLN OXT O N N 77 GLN H H N N 78 GLN H2 H N N 79 GLN HA H N N 80 GLN HB2 H N N 81 GLN HB3 H N N 82 GLN HG2 H N N 83 GLN HG3 H N N 84 GLN HE21 H N N 85 GLN HE22 H N N 86 GLN HXT H N N 87 GLU N N N N 88 GLU CA C N S 89 GLU C C N N 90 GLU O O N N 91 GLU CB C N N 92 GLU CG C N N 93 GLU CD C N N 94 GLU OE1 O N N 95 GLU OE2 O N N 96 GLU OXT O N N 97 GLU H H N N 98 GLU H2 H N N 99 GLU HA H N N 100 GLU HB2 H N N 101 GLU HB3 H N N 102 GLU HG2 H N N 103 GLU HG3 H N N 104 GLU HE2 H N N 105 GLU HXT H N N 106 GLY N N N N 107 GLY CA C N N 108 GLY C C N N 109 GLY O O N N 110 GLY OXT O N N 111 GLY H H N N 112 GLY H2 H N N 113 GLY HA2 H N N 114 GLY HA3 H N N 115 GLY HXT H N N 116 GOL C1 C N N 117 GOL O1 O N N 118 GOL C2 C N N 119 GOL O2 O N N 120 GOL C3 C N N 121 GOL O3 O N N 122 GOL H11 H N N 123 GOL H12 H N N 124 GOL HO1 H N N 125 GOL H2 H N N 126 GOL HO2 H N N 127 GOL H31 H N N 128 GOL H32 H N N 129 GOL HO3 H N N 130 HOH O O N N 131 HOH H1 H N N 132 HOH H2 H N N 133 ILE N N N N 134 ILE CA C N S 135 ILE C C N N 136 ILE O O N N 137 ILE CB C N S 138 ILE CG1 C N N 139 ILE CG2 C N N 140 ILE CD1 C N N 141 ILE OXT O N N 142 ILE H H N N 143 ILE H2 H N N 144 ILE HA H N N 145 ILE HB H N N 146 ILE HG12 H N N 147 ILE HG13 H N N 148 ILE HG21 H N N 149 ILE HG22 H N N 150 ILE HG23 H N N 151 ILE HD11 H N N 152 ILE HD12 H N N 153 ILE HD13 H N N 154 ILE HXT H N N 155 LEU N N N N 156 LEU CA C N S 157 LEU C C N N 158 LEU O O N N 159 LEU CB C N N 160 LEU CG C N N 161 LEU CD1 C N N 162 LEU CD2 C N N 163 LEU OXT O N N 164 LEU H H N N 165 LEU H2 H N N 166 LEU HA H N N 167 LEU HB2 H N N 168 LEU HB3 H N N 169 LEU HG H N N 170 LEU HD11 H N N 171 LEU HD12 H N N 172 LEU HD13 H N N 173 LEU HD21 H N N 174 LEU HD22 H N N 175 LEU HD23 H N N 176 LEU HXT H N N 177 PHE N N N N 178 PHE CA C N S 179 PHE C C N N 180 PHE O O N N 181 PHE CB C N N 182 PHE CG C Y N 183 PHE CD1 C Y N 184 PHE CD2 C Y N 185 PHE CE1 C Y N 186 PHE CE2 C Y N 187 PHE CZ C Y N 188 PHE OXT O N N 189 PHE H H N N 190 PHE H2 H N N 191 PHE HA H N N 192 PHE HB2 H N N 193 PHE HB3 H N N 194 PHE HD1 H N N 195 PHE HD2 H N N 196 PHE HE1 H N N 197 PHE HE2 H N N 198 PHE HZ H N N 199 PHE HXT H N N 200 PRO N N N N 201 PRO CA C N S 202 PRO C C N N 203 PRO O O N N 204 PRO CB C N N 205 PRO CG C N N 206 PRO CD C N N 207 PRO OXT O N N 208 PRO H H N N 209 PRO HA H N N 210 PRO HB2 H N N 211 PRO HB3 H N N 212 PRO HG2 H N N 213 PRO HG3 H N N 214 PRO HD2 H N N 215 PRO HD3 H N N 216 PRO HXT H N N 217 SO4 S S N N 218 SO4 O1 O N N 219 SO4 O2 O N N 220 SO4 O3 O N N 221 SO4 O4 O N N 222 THR N N N N 223 THR CA C N S 224 THR C C N N 225 THR O O N N 226 THR CB C N R 227 THR OG1 O N N 228 THR CG2 C N N 229 THR OXT O N N 230 THR H H N N 231 THR H2 H N N 232 THR HA H N N 233 THR HB H N N 234 THR HG1 H N N 235 THR HG21 H N N 236 THR HG22 H N N 237 THR HG23 H N N 238 THR HXT H N N 239 TRP N N N N 240 TRP CA C N S 241 TRP C C N N 242 TRP O O N N 243 TRP CB C N N 244 TRP CG C Y N 245 TRP CD1 C Y N 246 TRP CD2 C Y N 247 TRP NE1 N Y N 248 TRP CE2 C Y N 249 TRP CE3 C Y N 250 TRP CZ2 C Y N 251 TRP CZ3 C Y N 252 TRP CH2 C Y N 253 TRP OXT O N N 254 TRP H H N N 255 TRP H2 H N N 256 TRP HA H N N 257 TRP HB2 H N N 258 TRP HB3 H N N 259 TRP HD1 H N N 260 TRP HE1 H N N 261 TRP HE3 H N N 262 TRP HZ2 H N N 263 TRP HZ3 H N N 264 TRP HH2 H N N 265 TRP HXT H N N 266 TYR N N N N 267 TYR CA C N S 268 TYR C C N N 269 TYR O O N N 270 TYR CB C N N 271 TYR CG C Y N 272 TYR CD1 C Y N 273 TYR CD2 C Y N 274 TYR CE1 C Y N 275 TYR CE2 C Y N 276 TYR CZ C Y N 277 TYR OH O N N 278 TYR OXT O N N 279 TYR H H N N 280 TYR H2 H N N 281 TYR HA H N N 282 TYR HB2 H N N 283 TYR HB3 H N N 284 TYR HD1 H N N 285 TYR HD2 H N N 286 TYR HE1 H N N 287 TYR HE2 H N N 288 TYR HH H N N 289 TYR HXT H N N 290 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 CYS N CA sing N N 39 CYS N H sing N N 40 CYS N H2 sing N N 41 CYS CA C sing N N 42 CYS CA CB sing N N 43 CYS CA HA sing N N 44 CYS C O doub N N 45 CYS C OXT sing N N 46 CYS CB SG sing N N 47 CYS CB HB2 sing N N 48 CYS CB HB3 sing N N 49 CYS SG HG sing N N 50 CYS OXT HXT sing N N 51 DAL N CA sing N N 52 DAL N H sing N N 53 DAL N H2 sing N N 54 DAL CA CB sing N N 55 DAL CA C sing N N 56 DAL CA HA sing N N 57 DAL CB HB1 sing N N 58 DAL CB HB2 sing N N 59 DAL CB HB3 sing N N 60 DAL C O doub N N 61 DAL C OXT sing N N 62 DAL OXT HXT sing N N 63 GLN N CA sing N N 64 GLN N H sing N N 65 GLN N H2 sing N N 66 GLN CA C sing N N 67 GLN CA CB sing N N 68 GLN CA HA sing N N 69 GLN C O doub N N 70 GLN C OXT sing N N 71 GLN CB CG sing N N 72 GLN CB HB2 sing N N 73 GLN CB HB3 sing N N 74 GLN CG CD sing N N 75 GLN CG HG2 sing N N 76 GLN CG HG3 sing N N 77 GLN CD OE1 doub N N 78 GLN CD NE2 sing N N 79 GLN NE2 HE21 sing N N 80 GLN NE2 HE22 sing N N 81 GLN OXT HXT sing N N 82 GLU N CA sing N N 83 GLU N H sing N N 84 GLU N H2 sing N N 85 GLU CA C sing N N 86 GLU CA CB sing N N 87 GLU CA HA sing N N 88 GLU C O doub N N 89 GLU C OXT sing N N 90 GLU CB CG sing N N 91 GLU CB HB2 sing N N 92 GLU CB HB3 sing N N 93 GLU CG CD sing N N 94 GLU CG HG2 sing N N 95 GLU CG HG3 sing N N 96 GLU CD OE1 doub N N 97 GLU CD OE2 sing N N 98 GLU OE2 HE2 sing N N 99 GLU OXT HXT sing N N 100 GLY N CA sing N N 101 GLY N H sing N N 102 GLY N H2 sing N N 103 GLY CA C sing N N 104 GLY CA HA2 sing N N 105 GLY CA HA3 sing N N 106 GLY C O doub N N 107 GLY C OXT sing N N 108 GLY OXT HXT sing N N 109 GOL C1 O1 sing N N 110 GOL C1 C2 sing N N 111 GOL C1 H11 sing N N 112 GOL C1 H12 sing N N 113 GOL O1 HO1 sing N N 114 GOL C2 O2 sing N N 115 GOL C2 C3 sing N N 116 GOL C2 H2 sing N N 117 GOL O2 HO2 sing N N 118 GOL C3 O3 sing N N 119 GOL C3 H31 sing N N 120 GOL C3 H32 sing N N 121 GOL O3 HO3 sing N N 122 HOH O H1 sing N N 123 HOH O H2 sing N N 124 ILE N CA sing N N 125 ILE N H sing N N 126 ILE N H2 sing N N 127 ILE CA C sing N N 128 ILE CA CB sing N N 129 ILE CA HA sing N N 130 ILE C O doub N N 131 ILE C OXT sing N N 132 ILE CB CG1 sing N N 133 ILE CB CG2 sing N N 134 ILE CB HB sing N N 135 ILE CG1 CD1 sing N N 136 ILE CG1 HG12 sing N N 137 ILE CG1 HG13 sing N N 138 ILE CG2 HG21 sing N N 139 ILE CG2 HG22 sing N N 140 ILE CG2 HG23 sing N N 141 ILE CD1 HD11 sing N N 142 ILE CD1 HD12 sing N N 143 ILE CD1 HD13 sing N N 144 ILE OXT HXT sing N N 145 LEU N CA sing N N 146 LEU N H sing N N 147 LEU N H2 sing N N 148 LEU CA C sing N N 149 LEU CA CB sing N N 150 LEU CA HA sing N N 151 LEU C O doub N N 152 LEU C OXT sing N N 153 LEU CB CG sing N N 154 LEU CB HB2 sing N N 155 LEU CB HB3 sing N N 156 LEU CG CD1 sing N N 157 LEU CG CD2 sing N N 158 LEU CG HG sing N N 159 LEU CD1 HD11 sing N N 160 LEU CD1 HD12 sing N N 161 LEU CD1 HD13 sing N N 162 LEU CD2 HD21 sing N N 163 LEU CD2 HD22 sing N N 164 LEU CD2 HD23 sing N N 165 LEU OXT HXT sing N N 166 PHE N CA sing N N 167 PHE N H sing N N 168 PHE N H2 sing N N 169 PHE CA C sing N N 170 PHE CA CB sing N N 171 PHE CA HA sing N N 172 PHE C O doub N N 173 PHE C OXT sing N N 174 PHE CB CG sing N N 175 PHE CB HB2 sing N N 176 PHE CB HB3 sing N N 177 PHE CG CD1 doub Y N 178 PHE CG CD2 sing Y N 179 PHE CD1 CE1 sing Y N 180 PHE CD1 HD1 sing N N 181 PHE CD2 CE2 doub Y N 182 PHE CD2 HD2 sing N N 183 PHE CE1 CZ doub Y N 184 PHE CE1 HE1 sing N N 185 PHE CE2 CZ sing Y N 186 PHE CE2 HE2 sing N N 187 PHE CZ HZ sing N N 188 PHE OXT HXT sing N N 189 PRO N CA sing N N 190 PRO N CD sing N N 191 PRO N H sing N N 192 PRO CA C sing N N 193 PRO CA CB sing N N 194 PRO CA HA sing N N 195 PRO C O doub N N 196 PRO C OXT sing N N 197 PRO CB CG sing N N 198 PRO CB HB2 sing N N 199 PRO CB HB3 sing N N 200 PRO CG CD sing N N 201 PRO CG HG2 sing N N 202 PRO CG HG3 sing N N 203 PRO CD HD2 sing N N 204 PRO CD HD3 sing N N 205 PRO OXT HXT sing N N 206 SO4 S O1 doub N N 207 SO4 S O2 doub N N 208 SO4 S O3 sing N N 209 SO4 S O4 sing N N 210 THR N CA sing N N 211 THR N H sing N N 212 THR N H2 sing N N 213 THR CA C sing N N 214 THR CA CB sing N N 215 THR CA HA sing N N 216 THR C O doub N N 217 THR C OXT sing N N 218 THR CB OG1 sing N N 219 THR CB CG2 sing N N 220 THR CB HB sing N N 221 THR OG1 HG1 sing N N 222 THR CG2 HG21 sing N N 223 THR CG2 HG22 sing N N 224 THR CG2 HG23 sing N N 225 THR OXT HXT sing N N 226 TRP N CA sing N N 227 TRP N H sing N N 228 TRP N H2 sing N N 229 TRP CA C sing N N 230 TRP CA CB sing N N 231 TRP CA HA sing N N 232 TRP C O doub N N 233 TRP C OXT sing N N 234 TRP CB CG sing N N 235 TRP CB HB2 sing N N 236 TRP CB HB3 sing N N 237 TRP CG CD1 doub Y N 238 TRP CG CD2 sing Y N 239 TRP CD1 NE1 sing Y N 240 TRP CD1 HD1 sing N N 241 TRP CD2 CE2 doub Y N 242 TRP CD2 CE3 sing Y N 243 TRP NE1 CE2 sing Y N 244 TRP NE1 HE1 sing N N 245 TRP CE2 CZ2 sing Y N 246 TRP CE3 CZ3 doub Y N 247 TRP CE3 HE3 sing N N 248 TRP CZ2 CH2 doub Y N 249 TRP CZ2 HZ2 sing N N 250 TRP CZ3 CH2 sing Y N 251 TRP CZ3 HZ3 sing N N 252 TRP CH2 HH2 sing N N 253 TRP OXT HXT sing N N 254 TYR N CA sing N N 255 TYR N H sing N N 256 TYR N H2 sing N N 257 TYR CA C sing N N 258 TYR CA CB sing N N 259 TYR CA HA sing N N 260 TYR C O doub N N 261 TYR C OXT sing N N 262 TYR CB CG sing N N 263 TYR CB HB2 sing N N 264 TYR CB HB3 sing N N 265 TYR CG CD1 doub Y N 266 TYR CG CD2 sing Y N 267 TYR CD1 CE1 sing Y N 268 TYR CD1 HD1 sing N N 269 TYR CD2 CE2 doub Y N 270 TYR CD2 HD2 sing N N 271 TYR CE1 CZ doub Y N 272 TYR CE1 HE1 sing N N 273 TYR CE2 CZ sing Y N 274 TYR CE2 HE2 sing N N 275 TYR CZ OH sing N N 276 TYR OH HH sing N N 277 TYR OXT HXT sing N N 278 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'SULFATE ION' SO4 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DFN _pdbx_initial_refinement_model.details 'Based on monomer of HNP-3 (PDB code 1DFN)' #