HEADER ANTIMICROBIAL PROTEIN 10-MAY-05 1ZMM TITLE CRYSTAL STRUCTURE OF HUMAN ALPHA-DEFENSIN-4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUTROPHIL DEFENSIN 4; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: HNP-4, HP-4, DEFENSIN, ALPHA 4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DEFA4, DEF4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN ALPHA-DEFENSIN, ANTIMICROBIAL PEPTIDE, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LUBKOWSKI,A.SZYK,W.LU REVDAT 6 23-AUG-23 1ZMM 1 REMARK REVDAT 5 11-OCT-17 1ZMM 1 REMARK REVDAT 4 13-JUL-11 1ZMM 1 VERSN REVDAT 3 24-FEB-09 1ZMM 1 VERSN REVDAT 2 12-DEC-06 1ZMM 1 JRNL REVDAT 1 30-MAY-06 1ZMM 0 JRNL AUTH A.SZYK,Z.WU,K.TUCKER,D.YANG,W.LU,J.LUBKOWSKI JRNL TITL CRYSTAL STRUCTURES OF HUMAN {ALPHA}-DEFENSINS HNP4, HD5, AND JRNL TITL 2 HD6. JRNL REF PROTEIN SCI. V. 15 2749 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 17088326 JRNL DOI 10.1110/PS.062336606 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 15127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 806 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1712 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 982 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.39000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.670 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1025 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 986 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1384 ; 1.615 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2251 ; 0.697 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 124 ; 6.712 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 172 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1098 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 252 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 146 ; 0.223 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1206 ; 0.274 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 749 ; 0.083 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 135 ; 0.276 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.277 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 83 ; 0.368 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.264 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 634 ; 1.450 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1033 ; 2.283 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 391 ; 1.686 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 351 ; 2.664 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 31 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1990 2.6713 6.9339 REMARK 3 T TENSOR REMARK 3 T11: 0.0896 T22: 0.0218 REMARK 3 T33: 0.0308 T12: -0.0044 REMARK 3 T13: -0.0183 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.6762 L22: 2.8225 REMARK 3 L33: 0.8041 L12: -0.0036 REMARK 3 L13: 1.1107 L23: 1.0461 REMARK 3 S TENSOR REMARK 3 S11: 0.0960 S12: 0.0339 S13: -0.0658 REMARK 3 S21: 0.3333 S22: -0.0172 S23: -0.0780 REMARK 3 S31: 0.0738 S32: 0.0093 S33: -0.0787 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 33 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3901 -2.4637 -2.3387 REMARK 3 T TENSOR REMARK 3 T11: 0.0333 T22: 0.0538 REMARK 3 T33: 0.0169 T12: 0.0003 REMARK 3 T13: 0.0230 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 3.8769 L22: 1.2857 REMARK 3 L33: 1.2854 L12: 1.3000 REMARK 3 L13: 0.2317 L23: 0.8119 REMARK 3 S TENSOR REMARK 3 S11: -0.0628 S12: 0.0649 S13: 0.0205 REMARK 3 S21: 0.0188 S22: -0.0174 S23: 0.0825 REMARK 3 S31: 0.0691 S32: -0.0288 S33: 0.0802 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 31 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4019 3.0797 25.9848 REMARK 3 T TENSOR REMARK 3 T11: 0.0419 T22: 0.0217 REMARK 3 T33: 0.0283 T12: 0.0080 REMARK 3 T13: 0.0061 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 2.1348 L22: 4.4399 REMARK 3 L33: 0.7996 L12: -1.0876 REMARK 3 L13: -1.1403 L23: -1.0644 REMARK 3 S TENSOR REMARK 3 S11: -0.0538 S12: -0.0295 S13: 0.1062 REMARK 3 S21: 0.2572 S22: 0.1757 S23: -0.0619 REMARK 3 S31: -0.0497 S32: -0.0963 S33: -0.1219 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 33 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0415 8.2968 23.4352 REMARK 3 T TENSOR REMARK 3 T11: 0.0285 T22: 0.0423 REMARK 3 T33: 0.0183 T12: -0.0046 REMARK 3 T13: 0.0156 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 4.3126 L22: 1.5103 REMARK 3 L33: 2.7189 L12: 2.1214 REMARK 3 L13: 2.3624 L23: 0.3989 REMARK 3 S TENSOR REMARK 3 S11: 0.0577 S12: 0.0190 S13: -0.1949 REMARK 3 S21: -0.0409 S22: -0.0504 S23: -0.1193 REMARK 3 S31: -0.0595 S32: 0.0497 S33: -0.0073 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZMM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15948 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23300 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: BASED ON THE MONOMER OF HNP-3 (PDB ID CODE 1DFN) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, HEPES, 2-METHYL-2,4 REMARK 280 -PENTANEDIOL, PEG400, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.00200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.62750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.00200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.62750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE AUTHOR STATES THE BIOLOGICAL UNIT IS A PROBABLE REMARK 300 MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 32 REMARK 465 VAL A 33 REMARK 465 ARG C 32 REMARK 465 VAL C 33 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 110 O HOH C 119 1.36 REMARK 500 O HOH C 198 O HOH D 115 1.85 REMARK 500 O HOH C 158 O HOH D 133 1.90 REMARK 500 O PHE C 26 O HOH C 119 2.09 REMARK 500 OG1 THR C 12 O HOH C 179 2.16 REMARK 500 O HOH C 117 O HOH C 135 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 191 O HOH C 149 1554 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 7 -84.76 -127.46 REMARK 500 VAL B 7 -55.83 -129.76 REMARK 500 VAL C 7 -97.20 -126.64 REMARK 500 VAL D 7 -55.52 -127.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DFN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RELATED ALPHA-DEFENSIN REMARK 900 RELATED ID: 1ZMH RELATED DB: PDB REMARK 900 RELATED ID: 1ZMI RELATED DB: PDB REMARK 900 RELATED ID: 1ZMK RELATED DB: PDB REMARK 900 RELATED ID: 1ZMP RELATED DB: PDB REMARK 900 RELATED ID: 1ZMQ RELATED DB: PDB DBREF 1ZMM A 1 33 UNP P12838 DEF4_HUMAN 64 96 DBREF 1ZMM B 1 33 UNP P12838 DEF4_HUMAN 64 96 DBREF 1ZMM C 1 33 UNP P12838 DEF4_HUMAN 64 96 DBREF 1ZMM D 1 33 UNP P12838 DEF4_HUMAN 64 96 SEQRES 1 A 33 VAL CYS SER CYS ARG LEU VAL PHE CYS ARG ARG THR GLU SEQRES 2 A 33 LEU ARG VAL GLY ASN CYS LEU ILE GLY GLY VAL SER PHE SEQRES 3 A 33 THR TYR CYS CYS THR ARG VAL SEQRES 1 B 33 VAL CYS SER CYS ARG LEU VAL PHE CYS ARG ARG THR GLU SEQRES 2 B 33 LEU ARG VAL GLY ASN CYS LEU ILE GLY GLY VAL SER PHE SEQRES 3 B 33 THR TYR CYS CYS THR ARG VAL SEQRES 1 C 33 VAL CYS SER CYS ARG LEU VAL PHE CYS ARG ARG THR GLU SEQRES 2 C 33 LEU ARG VAL GLY ASN CYS LEU ILE GLY GLY VAL SER PHE SEQRES 3 C 33 THR TYR CYS CYS THR ARG VAL SEQRES 1 D 33 VAL CYS SER CYS ARG LEU VAL PHE CYS ARG ARG THR GLU SEQRES 2 D 33 LEU ARG VAL GLY ASN CYS LEU ILE GLY GLY VAL SER PHE SEQRES 3 D 33 THR TYR CYS CYS THR ARG VAL FORMUL 5 HOH *104(H2 O) SHEET 1 A 6 CYS A 2 ARG A 5 0 SHEET 2 A 6 VAL A 24 CYS A 30 -1 O THR A 27 N ARG A 5 SHEET 3 A 6 LEU A 14 ILE A 21 -1 N VAL A 16 O TYR A 28 SHEET 4 A 6 LEU B 14 ILE B 21 -1 O LEU B 20 N ASN A 18 SHEET 5 A 6 VAL B 24 CYS B 30 -1 O TYR B 28 N VAL B 16 SHEET 6 A 6 CYS B 2 ARG B 5 -1 N ARG B 5 O THR B 27 SHEET 1 B 6 CYS C 2 ARG C 5 0 SHEET 2 B 6 VAL C 24 CYS C 30 -1 O THR C 27 N ARG C 5 SHEET 3 B 6 LEU C 14 ILE C 21 -1 N VAL C 16 O TYR C 28 SHEET 4 B 6 GLU D 13 ILE D 21 -1 O LEU D 20 N ASN C 18 SHEET 5 B 6 VAL D 24 THR D 31 -1 O PHE D 26 N CYS D 19 SHEET 6 B 6 CYS D 2 ARG D 5 -1 N ARG D 5 O THR D 27 SSBOND 1 CYS A 2 CYS A 30 1555 1555 2.04 SSBOND 2 CYS A 4 CYS A 19 1555 1555 2.04 SSBOND 3 CYS A 9 CYS A 29 1555 1555 2.05 SSBOND 4 CYS B 2 CYS B 30 1555 1555 2.02 SSBOND 5 CYS B 4 CYS B 19 1555 1555 2.02 SSBOND 6 CYS B 9 CYS B 29 1555 1555 2.02 SSBOND 7 CYS C 2 CYS C 30 1555 1555 2.06 SSBOND 8 CYS C 4 CYS C 19 1555 1555 2.05 SSBOND 9 CYS C 9 CYS C 29 1555 1555 2.04 SSBOND 10 CYS D 2 CYS D 30 1555 1555 2.04 SSBOND 11 CYS D 4 CYS D 19 1555 1555 2.02 SSBOND 12 CYS D 9 CYS D 29 1555 1555 2.02 CRYST1 72.004 39.255 48.118 90.00 110.08 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013888 0.000000 0.005077 0.00000 SCALE2 0.000000 0.025474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022127 0.00000