HEADER TRANSFERASE 10-MAY-05 1ZMR TITLE CRYSTAL STRUCTURE OF THE E. COLI PHOSPHOGLYCERATE KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOGLYCERATE KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.2.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PGK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET27B KEYWDS TRANSFERASE, GLYCOLYSIS, KINASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MARQUSEE REVDAT 5 14-FEB-24 1ZMR 1 REMARK LINK REVDAT 4 13-JUL-11 1ZMR 1 VERSN REVDAT 3 16-MAR-10 1ZMR 1 JRNL REVDAT 2 24-FEB-09 1ZMR 1 VERSN REVDAT 1 02-MAY-06 1ZMR 0 JRNL AUTH T.A.YOUNG,E.SKORDALAKES,S.MARQUSEE JRNL TITL COMPARISON OF PROTEOLYTIC SUSCEPTIBILITY IN PHOSPHOGLYCERATE JRNL TITL 2 KINASES FROM YEAST AND E. COLI: MODULATION OF CONFORMATIONAL JRNL TITL 3 ENSEMBLES WITHOUT ALTERING STRUCTURE OR STABILITY. JRNL REF J.MOL.BIOL. V. 368 1438 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17397866 JRNL DOI 10.1016/J.JMB.2007.02.077 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 25826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1370 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1843 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.54000 REMARK 3 B22 (A**2) : 2.54000 REMARK 3 B33 (A**2) : -3.81000 REMARK 3 B12 (A**2) : 1.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.256 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.369 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2922 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3955 ; 1.496 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 385 ; 4.453 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;36.958 ;25.398 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 515 ;13.245 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;12.440 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 473 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2144 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1436 ; 0.182 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2016 ; 0.294 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 199 ; 0.100 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.040 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.153 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.080 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.028 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1974 ; 0.324 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3062 ; 0.580 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1055 ; 0.509 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 893 ; 0.894 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 387 REMARK 3 ORIGIN FOR THE GROUP (A): 34.7435 40.5685 16.2560 REMARK 3 T TENSOR REMARK 3 T11: -0.1493 T22: -0.0047 REMARK 3 T33: -0.0472 T12: -0.0385 REMARK 3 T13: -0.0079 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.4609 L22: 0.3608 REMARK 3 L33: 1.4235 L12: -0.6288 REMARK 3 L13: -0.0918 L23: -0.0549 REMARK 3 S TENSOR REMARK 3 S11: 0.0878 S12: 0.0129 S13: -0.0081 REMARK 3 S21: -0.0314 S22: -0.0925 S23: 0.0212 REMARK 3 S31: -0.1174 S32: 0.1631 S33: 0.0047 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZMR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32964 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, CALCIUM ACETATE, CACODYLATE, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.18400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.09200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.09200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 130.18400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ARG A 183 CD PRO A 184 1.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 184 C - N - CA ANGL. DEV. = 59.5 DEGREES REMARK 500 PRO A 184 C - N - CD ANGL. DEV. = -53.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 95 -12.16 -143.34 REMARK 500 ASP A 97 52.29 -115.76 REMARK 500 ASN A 111 110.42 -18.76 REMARK 500 HIS A 152 -64.69 -134.02 REMARK 500 ARG A 183 114.97 77.48 REMARK 500 PRO A 184 76.88 89.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 82 O REMARK 620 2 LEU A 85 O 76.5 REMARK 620 3 GLU A 323 OE1 93.7 117.3 REMARK 620 4 GLU A 323 OE2 89.3 72.8 44.8 REMARK 620 5 HOH A 531 O 161.0 86.7 86.0 77.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 84 O REMARK 620 2 HOH A 510 O 89.7 REMARK 620 3 HOH A 546 O 94.1 153.0 REMARK 620 4 HOH A 564 O 92.4 79.2 74.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 237 O REMARK 620 2 ASP A 240 OD1 84.0 REMARK 620 3 ASP A 240 OD2 128.9 45.8 REMARK 620 4 GLU A 383 O 149.9 122.9 77.1 REMARK 620 5 LYS A 386 O 73.4 149.4 155.8 84.9 REMARK 620 6 HOH A 491 O 106.5 91.3 86.9 87.5 76.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 403 DBREF 1ZMR A 1 387 UNP P11665 PGK_ECOLI 0 386 SEQRES 1 A 387 MET SER VAL ILE LYS MET THR ASP LEU ASP LEU ALA GLY SEQRES 2 A 387 LYS ARG VAL PHE ILE ARG ALA ASP LEU ASN VAL PRO VAL SEQRES 3 A 387 LYS ASP GLY LYS VAL THR SER ASP ALA ARG ILE ARG ALA SEQRES 4 A 387 SER LEU PRO THR ILE GLU LEU ALA LEU LYS GLN GLY ALA SEQRES 5 A 387 LYS VAL MET VAL THR SER HIS LEU GLY ARG PRO THR GLU SEQRES 6 A 387 GLY GLU TYR ASN GLU GLU PHE SER LEU LEU PRO VAL VAL SEQRES 7 A 387 ASN TYR LEU LYS ASP LYS LEU SER ASN PRO VAL ARG LEU SEQRES 8 A 387 VAL LYS ASP TYR LEU ASP GLY VAL ASP VAL ALA GLU GLY SEQRES 9 A 387 GLU LEU VAL VAL LEU GLU ASN VAL ARG PHE ASN LYS GLY SEQRES 10 A 387 GLU LYS LYS ASP ASP GLU THR LEU SER LYS LYS TYR ALA SEQRES 11 A 387 ALA LEU CYS ASP VAL PHE VAL MET ASP ALA PHE GLY THR SEQRES 12 A 387 ALA HIS ARG ALA GLN ALA SER THR HIS GLY ILE GLY LYS SEQRES 13 A 387 PHE ALA ASP VAL ALA CYS ALA GLY PRO LEU LEU ALA ALA SEQRES 14 A 387 GLU LEU ASP ALA LEU GLY LYS ALA LEU LYS GLU PRO ALA SEQRES 15 A 387 ARG PRO MET VAL ALA ILE VAL GLY GLY SER LYS VAL SER SEQRES 16 A 387 THR LYS LEU THR VAL LEU ASP SER LEU SER LYS ILE ALA SEQRES 17 A 387 ASP GLN LEU ILE VAL GLY GLY GLY ILE ALA ASN THR PHE SEQRES 18 A 387 ILE ALA ALA GLN GLY HIS ASP VAL GLY LYS SER LEU TYR SEQRES 19 A 387 GLU ALA ASP LEU VAL ASP GLU ALA LYS ARG LEU LEU THR SEQRES 20 A 387 THR CYS ASN ILE PRO VAL PRO SER ASP VAL ARG VAL ALA SEQRES 21 A 387 THR GLU PHE SER GLU THR ALA PRO ALA THR LEU LYS SER SEQRES 22 A 387 VAL ASN ASP VAL LYS ALA ASP GLU GLN ILE LEU ASP ILE SEQRES 23 A 387 GLY ASP ALA SER ALA GLN GLU LEU ALA GLU ILE LEU LYS SEQRES 24 A 387 ASN ALA LYS THR ILE LEU TRP ASN GLY PRO VAL GLY VAL SEQRES 25 A 387 PHE GLU PHE PRO ASN PHE ARG LYS GLY THR GLU ILE VAL SEQRES 26 A 387 ALA ASN ALA ILE ALA ASP SER GLU ALA PHE SER ILE ALA SEQRES 27 A 387 GLY GLY GLY ASP THR LEU ALA ALA ILE ASP LEU PHE GLY SEQRES 28 A 387 ILE ALA ASP LYS ILE SER TYR ILE SER THR GLY GLY GLY SEQRES 29 A 387 ALA PHE LEU GLU PHE VAL GLU GLY LYS VAL LEU PRO ALA SEQRES 30 A 387 VAL ALA MET LEU GLU GLU ARG ALA LYS LYS HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HETNAM CA CALCIUM ION FORMUL 2 CA 3(CA 2+) FORMUL 5 HOH *187(H2 O) HELIX 1 1 LYS A 5 LEU A 9 5 5 HELIX 2 2 ASP A 34 GLN A 50 1 17 HELIX 3 3 ASN A 69 SER A 73 5 5 HELIX 4 4 LEU A 74 LEU A 85 1 12 HELIX 5 5 ASN A 111 ASN A 115 5 5 HELIX 6 6 ASP A 122 LEU A 132 1 11 HELIX 7 7 ALA A 140 ALA A 144 5 5 HELIX 8 8 GLY A 153 ALA A 158 1 6 HELIX 9 9 GLY A 164 LYS A 179 1 16 HELIX 10 10 LYS A 197 LYS A 206 1 10 HELIX 11 11 GLY A 216 GLN A 225 1 10 HELIX 12 12 GLU A 235 ASP A 237 5 3 HELIX 13 13 LEU A 238 THR A 247 1 10 HELIX 14 14 ASN A 275 VAL A 277 5 3 HELIX 15 15 GLY A 287 ALA A 301 1 15 HELIX 16 16 PHE A 315 PHE A 318 5 4 HELIX 17 17 ARG A 319 SER A 332 1 14 HELIX 18 18 GLY A 340 GLY A 351 1 12 HELIX 19 19 ILE A 352 ILE A 356 5 5 HELIX 20 20 GLY A 363 GLU A 371 1 9 HELIX 21 21 LEU A 375 ALA A 385 1 11 SHEET 1 A 6 VAL A 89 VAL A 92 0 SHEET 2 A 6 LEU A 106 LEU A 109 1 O VAL A 108 N ARG A 90 SHEET 3 A 6 LYS A 53 THR A 57 1 N VAL A 54 O VAL A 107 SHEET 4 A 6 ARG A 15 ARG A 19 1 N ILE A 18 O MET A 55 SHEET 5 A 6 VAL A 135 MET A 138 1 O VAL A 137 N PHE A 17 SHEET 6 A 6 VAL A 160 ALA A 163 1 O VAL A 160 N PHE A 136 SHEET 1 B 2 VAL A 26 LYS A 27 0 SHEET 2 B 2 LYS A 30 VAL A 31 -1 O LYS A 30 N LYS A 27 SHEET 1 C 5 GLN A 210 GLY A 215 0 SHEET 2 C 5 MET A 185 GLY A 191 1 N ALA A 187 O ILE A 212 SHEET 3 C 5 THR A 303 ASN A 307 1 O ASN A 307 N GLY A 190 SHEET 4 C 5 PHE A 335 ALA A 338 1 O ILE A 337 N TRP A 306 SHEET 5 C 5 TYR A 358 ILE A 359 1 O TYR A 358 N SER A 336 SHEET 1 D 3 THR A 270 SER A 273 0 SHEET 2 D 3 ASP A 256 ALA A 260 -1 N VAL A 257 O LYS A 272 SHEET 3 D 3 GLN A 282 ILE A 286 -1 O ASP A 285 N ARG A 258 LINK O LYS A 82 CA CA A 403 1555 1555 2.39 LINK O LYS A 84 CA CA A 402 1555 1555 2.36 LINK O LEU A 85 CA CA A 403 1555 1555 2.53 LINK O ASP A 237 CA CA A 401 1555 1555 2.39 LINK OD1 ASP A 240 CA CA A 401 1555 1555 2.75 LINK OD2 ASP A 240 CA CA A 401 1555 1555 2.84 LINK OE1 GLU A 323 CA CA A 403 4555 1555 3.06 LINK OE2 GLU A 323 CA CA A 403 4555 1555 2.55 LINK O GLU A 383 CA CA A 401 5665 1555 2.39 LINK O LYS A 386 CA CA A 401 5665 1555 2.44 LINK CA CA A 401 O HOH A 491 1555 1555 2.39 LINK CA CA A 402 O HOH A 510 1555 1555 2.36 LINK CA CA A 402 O HOH A 546 1555 1555 2.39 LINK CA CA A 402 O HOH A 564 1555 1555 2.58 LINK CA CA A 403 O HOH A 531 1555 1555 2.42 SITE 1 AC1 5 ASP A 237 ASP A 240 GLU A 383 LYS A 386 SITE 2 AC1 5 HOH A 491 SITE 1 AC2 4 LYS A 84 HOH A 510 HOH A 546 HOH A 564 SITE 1 AC3 4 LYS A 82 LEU A 85 GLU A 323 HOH A 531 CRYST1 77.887 77.887 195.276 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012839 0.007413 0.000000 0.00000 SCALE2 0.000000 0.014825 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005121 0.00000