HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 11-MAY-05 1ZNO TITLE CRYSTAL STRUCTURE OF VC702 FROM VIBRIO CHOLERAE, NORTHEAST STRUCTURAL TITLE 2 GENOMICS CONSORTIUM TARGET: VCP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL UPF0244 PROTEIN VC0702; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: VIBRIO CHOLERAE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3 PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS MIXED ALPHA/BETA SANDWICH, HOMODIMER, STRUCTURAL GENOMICS, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR S.NI,F.FOROUHAR,D.E.BUSSIERE,H.ROBINSON,M.A.KENNEDY,NORTHEAST AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 13-NOV-24 1ZNO 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1ZNO 1 VERSN REVDAT 2 19-DEC-06 1ZNO 1 KEYWDS AUTHOR REVDAT 1 04-JUL-06 1ZNO 0 JRNL AUTH S.NI,F.FOROUHAR,D.E.BUSSIERE,H.ROBINSON,M.A.KENNEDY JRNL TITL CRYSTAL STRUCTURE OF VC0702 AT 2.0 A: CONSERVED HYPOTHETICAL JRNL TITL 2 PROTEIN FROM VIBRIO CHOLERAE. JRNL REF PROTEINS V. 63 733 2006 JRNL REFN ISSN 0887-3585 JRNL PMID 16498616 JRNL DOI 10.1002/PROT.20919 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 19393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1957 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2600 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.131 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZNO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032928. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .97912 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATER REMARK 200 SI(111), BEAM FOCUSED BY REMARK 200 TOROIDAL MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS - B4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23994 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, .1M TRIS PH 8.5, .2M REMARK 280 MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.17750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.17750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.30550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.05900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.30550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.05900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.17750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.30550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.05900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.17750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.30550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.05900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 177.53250 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 184 LIES ON A SPECIAL POSITION. REMARK 375 MG MG B 184 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 PRO A 2 REMARK 465 PRO A 3 REMARK 465 ILE A 4 REMARK 465 ILE A 5 REMARK 465 LYS A 6 REMARK 465 ARG A 7 REMARK 465 ARG A 8 REMARK 465 VAL A 9 REMARK 465 ARG A 124 REMARK 465 GLN A 125 REMARK 465 ALA A 126 REMARK 465 LYS A 127 REMARK 465 GLU A 128 REMARK 465 PHE A 137 REMARK 465 GLY A 138 REMARK 465 THR A 139 REMARK 465 ALA A 183 REMARK 465 MSE B 1 REMARK 465 PRO B 2 REMARK 465 PRO B 3 REMARK 465 ILE B 4 REMARK 465 ILE B 5 REMARK 465 LYS B 6 REMARK 465 ARG B 7 REMARK 465 ARG B 8 REMARK 465 VAL B 9 REMARK 465 GLU B 128 REMARK 465 LEU B 129 REMARK 465 VAL B 136 REMARK 465 PHE B 137 REMARK 465 GLY B 138 REMARK 465 THR B 139 REMARK 465 GLU B 140 REMARK 465 ASN B 141 REMARK 465 ALA B 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 483 O HOH B 483 3556 1.25 REMARK 500 O HOH B 486 O HOH B 487 3556 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 16 50.90 -69.24 REMARK 500 SER A 17 143.36 -172.94 REMARK 500 ASP A 36 -132.42 -108.73 REMARK 500 GLN A 37 -174.24 52.29 REMARK 500 GLU A 90 -111.79 63.91 REMARK 500 SER A 101 -146.83 -110.31 REMARK 500 GLN A 103 -33.45 -133.67 REMARK 500 ARG A 122 -92.79 -65.99 REMARK 500 ASP A 134 15.34 -69.89 REMARK 500 GLU A 135 -96.38 -110.97 REMARK 500 LYS A 145 55.05 -151.73 REMARK 500 ALA B 16 48.63 -70.39 REMARK 500 GLU B 90 -111.98 62.10 REMARK 500 MSE B 133 46.06 -66.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 184 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 155 O REMARK 620 2 HIS A 155 ND1 85.1 REMARK 620 3 HIS A 155 ND1 96.0 105.4 REMARK 620 4 HIS A 155 O 178.3 96.0 84.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 185 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 49 OE2 REMARK 620 2 ASN B 70 OD1 86.7 REMARK 620 3 HOH B 349 O 91.6 171.9 REMARK 620 4 HOH B 350 O 162.5 80.3 102.9 REMARK 620 5 HOH B 351 O 92.2 80.8 91.5 97.1 REMARK 620 6 HOH B 352 O 86.0 80.4 107.4 80.3 161.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 184 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 155 ND1 REMARK 620 2 HIS B 155 O 78.8 REMARK 620 3 HIS B 155 ND1 98.4 91.0 REMARK 620 4 HIS B 155 O 90.9 164.3 78.7 REMARK 620 5 HOH B 484 O 176.8 98.2 82.8 92.2 REMARK 620 6 HOH B 484 O 82.9 92.4 176.6 98.1 96.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 184 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 184 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 185 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: VCP1 RELATED DB: TARGETDB DBREF 1ZNO A 1 183 UNP Q9KU27 Y702_VIBCH 1 183 DBREF 1ZNO B 1 183 UNP Q9KU27 Y702_VIBCH 1 183 SEQADV 1ZNO MSE A 1 UNP Q9KU27 MET 1 MODIFIED RESIDUE SEQADV 1ZNO MSE A 10 UNP Q9KU27 MET 10 MODIFIED RESIDUE SEQADV 1ZNO MSE A 55 UNP Q9KU27 MET 55 MODIFIED RESIDUE SEQADV 1ZNO MSE A 97 UNP Q9KU27 MET 97 MODIFIED RESIDUE SEQADV 1ZNO MSE A 114 UNP Q9KU27 MET 114 MODIFIED RESIDUE SEQADV 1ZNO MSE A 133 UNP Q9KU27 MET 133 MODIFIED RESIDUE SEQADV 1ZNO MSE B 1 UNP Q9KU27 MET 1 MODIFIED RESIDUE SEQADV 1ZNO MSE B 10 UNP Q9KU27 MET 10 MODIFIED RESIDUE SEQADV 1ZNO MSE B 55 UNP Q9KU27 MET 55 MODIFIED RESIDUE SEQADV 1ZNO MSE B 97 UNP Q9KU27 MET 97 MODIFIED RESIDUE SEQADV 1ZNO MSE B 114 UNP Q9KU27 MET 114 MODIFIED RESIDUE SEQADV 1ZNO MSE B 133 UNP Q9KU27 MET 133 MODIFIED RESIDUE SEQRES 1 A 183 MSE PRO PRO ILE ILE LYS ARG ARG VAL MSE ARG LYS ILE SEQRES 2 A 183 ILE ILE ALA SER GLN ASN PRO ALA LYS VAL ASN ALA VAL SEQRES 3 A 183 ARG SER ALA PHE SER THR VAL PHE PRO ASP GLN GLU TRP SEQRES 4 A 183 GLU PHE ILE GLY VAL SER VAL PRO SER GLU VAL ALA ASP SEQRES 5 A 183 GLN PRO MSE SER ASP GLU GLU THR LYS GLN GLY ALA LEU SEQRES 6 A 183 ASN ARG VAL ARG ASN ALA LYS GLN ARG HIS PRO GLY ALA SEQRES 7 A 183 GLU TYR TYR VAL GLY LEU GLU ALA GLY ILE GLU GLU ASN SEQRES 8 A 183 LYS THR PHE ALA TRP MSE ILE VAL GLU SER ASP GLN GLN SEQRES 9 A 183 ARG GLY GLU SER ARG SER ALA CYS LEU MSE LEU PRO PRO SEQRES 10 A 183 LEU VAL LEU GLU ARG LEU ARG GLN ALA LYS GLU LEU GLY SEQRES 11 A 183 ASP VAL MSE ASP GLU VAL PHE GLY THR GLU ASN ILE LYS SEQRES 12 A 183 GLN LYS GLY GLY ALA ILE GLY LEU LEU THR ARG HIS HIS SEQRES 13 A 183 LEU THR ARG SER THR VAL TYR HIS GLN ALA LEU ILE LEU SEQRES 14 A 183 ALA LEU ILE PRO PHE ILE ASN PRO GLU HIS TYR PRO SER SEQRES 15 A 183 ALA SEQRES 1 B 183 MSE PRO PRO ILE ILE LYS ARG ARG VAL MSE ARG LYS ILE SEQRES 2 B 183 ILE ILE ALA SER GLN ASN PRO ALA LYS VAL ASN ALA VAL SEQRES 3 B 183 ARG SER ALA PHE SER THR VAL PHE PRO ASP GLN GLU TRP SEQRES 4 B 183 GLU PHE ILE GLY VAL SER VAL PRO SER GLU VAL ALA ASP SEQRES 5 B 183 GLN PRO MSE SER ASP GLU GLU THR LYS GLN GLY ALA LEU SEQRES 6 B 183 ASN ARG VAL ARG ASN ALA LYS GLN ARG HIS PRO GLY ALA SEQRES 7 B 183 GLU TYR TYR VAL GLY LEU GLU ALA GLY ILE GLU GLU ASN SEQRES 8 B 183 LYS THR PHE ALA TRP MSE ILE VAL GLU SER ASP GLN GLN SEQRES 9 B 183 ARG GLY GLU SER ARG SER ALA CYS LEU MSE LEU PRO PRO SEQRES 10 B 183 LEU VAL LEU GLU ARG LEU ARG GLN ALA LYS GLU LEU GLY SEQRES 11 B 183 ASP VAL MSE ASP GLU VAL PHE GLY THR GLU ASN ILE LYS SEQRES 12 B 183 GLN LYS GLY GLY ALA ILE GLY LEU LEU THR ARG HIS HIS SEQRES 13 B 183 LEU THR ARG SER THR VAL TYR HIS GLN ALA LEU ILE LEU SEQRES 14 B 183 ALA LEU ILE PRO PHE ILE ASN PRO GLU HIS TYR PRO SER SEQRES 15 B 183 ALA MODRES 1ZNO MSE A 10 MET SELENOMETHIONINE MODRES 1ZNO MSE A 55 MET SELENOMETHIONINE MODRES 1ZNO MSE A 97 MET SELENOMETHIONINE MODRES 1ZNO MSE A 114 MET SELENOMETHIONINE MODRES 1ZNO MSE A 133 MET SELENOMETHIONINE MODRES 1ZNO MSE B 10 MET SELENOMETHIONINE MODRES 1ZNO MSE B 55 MET SELENOMETHIONINE MODRES 1ZNO MSE B 97 MET SELENOMETHIONINE MODRES 1ZNO MSE B 114 MET SELENOMETHIONINE MODRES 1ZNO MSE B 133 MET SELENOMETHIONINE HET MSE A 10 8 HET MSE A 55 8 HET MSE A 97 8 HET MSE A 114 8 HET MSE A 133 8 HET MSE B 10 8 HET MSE B 55 8 HET MSE B 97 8 HET MSE B 114 8 HET MSE B 133 8 HET MG A 184 1 HET MG B 184 1 HET MG B 185 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 MG 3(MG 2+) FORMUL 6 HOH *144(H2 O) HELIX 1 1 ASN A 19 PHE A 34 1 16 HELIX 2 2 SER A 56 HIS A 75 1 20 HELIX 3 3 PRO A 116 ARG A 122 1 7 HELIX 4 4 LEU A 129 GLU A 135 5 7 HELIX 5 5 GLY A 146 THR A 153 1 8 HELIX 6 6 THR A 158 LEU A 171 1 14 HELIX 7 7 LEU A 171 ASN A 176 1 6 HELIX 8 8 ASN B 19 PHE B 34 1 16 HELIX 9 9 SER B 56 HIS B 75 1 20 HELIX 10 10 PRO B 116 ARG B 122 1 7 HELIX 11 11 GLY B 146 THR B 153 1 8 HELIX 12 12 THR B 158 LEU B 171 1 14 HELIX 13 13 LEU B 171 ASN B 176 1 6 SHEET 1 A 5 TRP A 39 GLY A 43 0 SHEET 2 A 5 ARG A 11 ILE A 15 1 N ILE A 13 O GLU A 40 SHEET 3 A 5 TYR A 80 GLU A 89 1 O TYR A 80 N ILE A 14 SHEET 4 A 5 LYS A 92 GLU A 100 -1 O TRP A 96 N GLU A 85 SHEET 5 A 5 ARG A 105 ARG A 109 -1 O GLY A 106 N VAL A 99 SHEET 1 B 5 TRP A 39 GLY A 43 0 SHEET 2 B 5 ARG A 11 ILE A 15 1 N ILE A 13 O GLU A 40 SHEET 3 B 5 TYR A 80 GLU A 89 1 O TYR A 80 N ILE A 14 SHEET 4 B 5 LYS A 92 GLU A 100 -1 O TRP A 96 N GLU A 85 SHEET 5 B 5 LEU A 113 MSE A 114 -1 O LEU A 113 N THR A 93 SHEET 1 C 5 GLU B 40 GLY B 43 0 SHEET 2 C 5 LYS B 12 ILE B 15 1 N ILE B 15 O ILE B 42 SHEET 3 C 5 TYR B 80 GLU B 89 1 O VAL B 82 N ILE B 14 SHEET 4 C 5 LYS B 92 GLU B 100 -1 O ILE B 98 N GLY B 83 SHEET 5 C 5 ARG B 105 ARG B 109 -1 O GLY B 106 N VAL B 99 SHEET 1 D 5 GLU B 40 GLY B 43 0 SHEET 2 D 5 LYS B 12 ILE B 15 1 N ILE B 15 O ILE B 42 SHEET 3 D 5 TYR B 80 GLU B 89 1 O VAL B 82 N ILE B 14 SHEET 4 D 5 LYS B 92 GLU B 100 -1 O ILE B 98 N GLY B 83 SHEET 5 D 5 LEU B 113 MSE B 114 -1 O LEU B 113 N THR B 93 LINK C MSE A 10 N ARG A 11 1555 1555 1.33 LINK C PRO A 54 N MSE A 55 1555 1555 1.33 LINK C MSE A 55 N SER A 56 1555 1555 1.32 LINK C TRP A 96 N MSE A 97 1555 1555 1.33 LINK C MSE A 97 N ILE A 98 1555 1555 1.33 LINK C LEU A 113 N MSE A 114 1555 1555 1.33 LINK C MSE A 114 N LEU A 115 1555 1555 1.33 LINK C VAL A 132 N MSE A 133 1555 1555 1.33 LINK C MSE A 133 N ASP A 134 1555 1555 1.33 LINK C MSE B 10 N ARG B 11 1555 1555 1.33 LINK C PRO B 54 N MSE B 55 1555 1555 1.33 LINK C MSE B 55 N SER B 56 1555 1555 1.33 LINK C TRP B 96 N MSE B 97 1555 1555 1.33 LINK C MSE B 97 N ILE B 98 1555 1555 1.33 LINK C LEU B 113 N MSE B 114 1555 1555 1.33 LINK C MSE B 114 N LEU B 115 1555 1555 1.33 LINK C VAL B 132 N MSE B 133 1555 1555 1.33 LINK C MSE B 133 N ASP B 134 1555 1555 1.33 LINK O HIS A 155 MG MG A 184 1555 1555 2.31 LINK ND1 HIS A 155 MG MG A 184 1555 1555 2.41 LINK ND1 HIS A 155 MG MG A 184 3556 1555 2.41 LINK O HIS A 155 MG MG A 184 3556 1555 2.31 LINK OE2 GLU B 49 MG MG B 185 1555 1555 2.30 LINK OD1 ASN B 70 MG MG B 185 1555 1555 2.24 LINK ND1 HIS B 155 MG MG B 184 1555 1555 2.37 LINK O HIS B 155 MG MG B 184 1555 1555 2.29 LINK ND1 HIS B 155 MG MG B 184 3556 1555 2.37 LINK O HIS B 155 MG MG B 184 3556 1555 2.29 LINK MG MG B 184 O HOH B 484 1555 1555 2.38 LINK MG MG B 184 O HOH B 484 1555 3556 2.38 LINK MG MG B 185 O HOH B 349 1555 1555 2.21 LINK MG MG B 185 O HOH B 350 1555 1555 2.34 LINK MG MG B 185 O HOH B 351 1555 1555 2.26 LINK MG MG B 185 O HOH B 352 1555 1555 2.36 SITE 1 AC1 1 HIS A 155 SITE 1 AC2 2 HIS B 155 HOH B 484 SITE 1 AC3 6 GLU B 49 ASN B 70 HOH B 349 HOH B 350 SITE 2 AC3 6 HOH B 351 HOH B 352 CRYST1 66.611 88.118 118.355 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015013 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011348 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008449 0.00000 HETATM 1 N MSE A 10 28.739 5.613 84.714 1.00 73.23 N HETATM 2 CA MSE A 10 27.335 6.109 84.619 1.00 73.16 C HETATM 3 C MSE A 10 26.992 6.486 83.181 1.00 71.02 C HETATM 4 O MSE A 10 27.723 7.239 82.537 1.00 71.10 O HETATM 5 CB MSE A 10 27.139 7.330 85.525 1.00 76.50 C HETATM 6 CG MSE A 10 25.705 7.844 85.568 1.00 80.37 C HETATM 7 SE MSE A 10 25.462 9.407 86.687 1.00 88.05 SE HETATM 8 CE MSE A 10 25.473 8.558 88.423 1.00 84.83 C