HEADER OXIDOREDUCTASE 12-MAY-05 1ZOA TITLE CRYSTAL STRUCTURE OF A328V MUTANT OF THE HEME DOMAIN OF P450BM-3 WITH TITLE 2 N-PALMITOYLGLYCINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL P-450:NADPH-P450 REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CYTOCHROME P450; COMPND 5 EC: 1.14.14.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 GENE: CYP102A1, CYP102; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA F'IQ; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEX-1 KEYWDS CYTOCHROME P-450, HEMEPROTEIN A328V, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.HEGDA,B.CHEN,D.C.HAINES,M.BONDLELA,D.MULLIN,S.E.GRAHAM, AUTHOR 2 D.R.TOMCHICK,M.MACHIUS,J.A.PETERSON REVDAT 6 23-AUG-23 1ZOA 1 REMARK REVDAT 5 20-OCT-21 1ZOA 1 REMARK SEQADV REVDAT 4 14-DEC-11 1ZOA 1 JRNL REVDAT 3 13-JUL-11 1ZOA 1 VERSN REVDAT 2 24-FEB-09 1ZOA 1 VERSN REVDAT 1 01-AUG-06 1ZOA 0 JRNL AUTH D.C.HAINES,A.HEGDE,B.CHEN,W.ZHAO,M.BONDLELA,J.M.HUMPHREYS, JRNL AUTH 2 D.A.MULLIN,D.R.TOMCHICK,M.MACHIUS,J.A.PETERSON JRNL TITL A SINGLE ACTIVE-SITE MUTATION OF P450BM-3 DRAMATICALLY JRNL TITL 2 ENHANCES SUBSTRATE BINDING AND RATE OF PRODUCT FORMATION. JRNL REF BIOCHEMISTRY V. 50 8333 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21875028 JRNL DOI 10.1021/BI201099J REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 110111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2196 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7342 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 166 REMARK 3 SOLVENT ATOMS : 933 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.03000 REMARK 3 B22 (A**2) : 0.84000 REMARK 3 B33 (A**2) : -4.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM SIGMAA (A) : 0.06 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.06 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.650 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.080 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : LIGAND_BILL.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZOA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94500 REMARK 200 MONOCHROMATOR : SILICON SINGLE CRYSTAL REMARK 200 MONOCHROMATORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110118 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 39.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.18900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1BU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MES, MAGNESIUM CHLORIDE, REMARK 280 GLYCEROL, PH 6.3, TEMPERATURE 277K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 74.02500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 THR A 1 REMARK 465 PRO A 459 REMARK 465 SER A 460 REMARK 465 PRO A 461 REMARK 465 SER A 462 REMARK 465 THR A 463 REMARK 465 GLU A 464 REMARK 465 GLN A 465 REMARK 465 SER A 466 REMARK 465 ALA A 467 REMARK 465 LYS A 468 REMARK 465 LYS A 469 REMARK 465 VAL A 470 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 465 MET B 0 REMARK 465 THR B 1 REMARK 465 PRO B 459 REMARK 465 SER B 460 REMARK 465 PRO B 461 REMARK 465 SER B 462 REMARK 465 THR B 463 REMARK 465 GLU B 464 REMARK 465 GLN B 465 REMARK 465 SER B 466 REMARK 465 ALA B 467 REMARK 465 LYS B 468 REMARK 465 LYS B 469 REMARK 465 VAL B 470 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 GLN A 229 CG CD OE1 NE2 REMARK 470 GLU B 228 CG CD OE1 OE2 REMARK 470 GLN B 229 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 328 N - CA - C ANGL. DEV. = -17.9 DEGREES REMARK 500 VAL B 328 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 15 -124.46 52.53 REMARK 500 ASP A 232 -165.17 -122.19 REMARK 500 HIS A 266 -38.19 -144.67 REMARK 500 ASP A 370 38.35 -80.04 REMARK 500 THR A 436 53.78 -145.08 REMARK 500 LEU A 437 -61.55 78.87 REMARK 500 LYS B 15 -125.37 52.18 REMARK 500 ASP B 84 32.88 -98.78 REMARK 500 ASP B 232 -167.05 -124.52 REMARK 500 HIS B 266 -39.58 -145.56 REMARK 500 ASP B 370 36.78 -80.05 REMARK 500 THR B 436 52.01 -145.02 REMARK 500 LEU B 437 -63.51 79.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 471 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 HEM A 471 NA 101.1 REMARK 620 3 HEM A 471 NB 90.9 89.5 REMARK 620 4 HEM A 471 NC 86.1 172.7 89.2 REMARK 620 5 HEM A 471 ND 99.0 89.3 170.1 90.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 471 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 400 SG REMARK 620 2 HEM B 471 NA 101.3 REMARK 620 3 HEM B 471 NB 90.5 89.8 REMARK 620 4 HEM B 471 NC 86.9 171.8 89.2 REMARK 620 5 HEM B 471 ND 99.6 89.5 169.9 90.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 471 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 471 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 140 A 1470 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 140 B 1471 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 1490 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 1491 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1480 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1481 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JPZ RELATED DB: PDB REMARK 900 N-PALMITOYLGLYCINE BOUND HEME DOMAIN OF P450BM-3 REMARK 900 RELATED ID: 2HPD RELATED DB: PDB REMARK 900 ORIGINAL STRUCTURE OF THE HEME DOMAIN OF THE SAME PROTEIN REMARK 900 RELATED ID: 1BU7 RELATED DB: PDB REMARK 900 CRYOGENIC STRUCTURE OF THE HEME DOMAIN OF THE SAME PROTEIN REMARK 900 RELATED ID: 1ZO4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A328S MUTANT OF THE HEME DOMAIN OF THE SAME REMARK 900 PROTEIN REMARK 900 RELATED ID: 1ZO9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE WILD TYPE HEME DOMAIN OF THE SAME PROTEIN REMARK 900 IN COMPLEX WITH N-PALMITOYLMETHIONINE DBREF 1ZOA A 1 470 UNP P14779 CPXB_BACME 1 470 DBREF 1ZOA B 1 470 UNP P14779 CPXB_BACME 1 470 SEQADV 1ZOA GLY A -2 UNP P14779 EXPRESSION TAG SEQADV 1ZOA ALA A -1 UNP P14779 EXPRESSION TAG SEQADV 1ZOA MET A 0 UNP P14779 EXPRESSION TAG SEQADV 1ZOA VAL A 328 UNP P14779 ALA 328 ENGINEERED MUTATION SEQADV 1ZOA GLY B -2 UNP P14779 EXPRESSION TAG SEQADV 1ZOA ALA B -1 UNP P14779 EXPRESSION TAG SEQADV 1ZOA MET B 0 UNP P14779 EXPRESSION TAG SEQADV 1ZOA VAL B 328 UNP P14779 ALA 328 ENGINEERED MUTATION SEQRES 1 A 473 GLY ALA MET THR ILE LYS GLU MET PRO GLN PRO LYS THR SEQRES 2 A 473 PHE GLY GLU LEU LYS ASN LEU PRO LEU LEU ASN THR ASP SEQRES 3 A 473 LYS PRO VAL GLN ALA LEU MET LYS ILE ALA ASP GLU LEU SEQRES 4 A 473 GLY GLU ILE PHE LYS PHE GLU ALA PRO GLY ARG VAL THR SEQRES 5 A 473 ARG TYR LEU SER SER GLN ARG LEU ILE LYS GLU ALA CYS SEQRES 6 A 473 ASP GLU SER ARG PHE ASP LYS ASN LEU SER GLN ALA LEU SEQRES 7 A 473 LYS PHE VAL ARG ASP PHE ALA GLY ASP GLY LEU PHE THR SEQRES 8 A 473 SER TRP THR HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN SEQRES 9 A 473 ILE LEU LEU PRO SER PHE SER GLN GLN ALA MET LYS GLY SEQRES 10 A 473 TYR HIS ALA MET MET VAL ASP ILE ALA VAL GLN LEU VAL SEQRES 11 A 473 GLN LYS TRP GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU SEQRES 12 A 473 VAL PRO GLU ASP MET THR ARG LEU THR LEU ASP THR ILE SEQRES 13 A 473 GLY LEU CYS GLY PHE ASN TYR ARG PHE ASN SER PHE TYR SEQRES 14 A 473 ARG ASP GLN PRO HIS PRO PHE ILE THR SER MET VAL ARG SEQRES 15 A 473 ALA LEU ASP GLU ALA MET ASN LYS LEU GLN ARG ALA ASN SEQRES 16 A 473 PRO ASP ASP PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE SEQRES 17 A 473 GLN GLU ASP ILE LYS VAL MET ASN ASP LEU VAL ASP LYS SEQRES 18 A 473 ILE ILE ALA ASP ARG LYS ALA SER GLY GLU GLN SER ASP SEQRES 19 A 473 ASP LEU LEU THR HIS MET LEU ASN GLY LYS ASP PRO GLU SEQRES 20 A 473 THR GLY GLU PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN SEQRES 21 A 473 ILE ILE THR PHE LEU ILE ALA GLY HIS GLU THR THR SER SEQRES 22 A 473 GLY LEU LEU SER PHE ALA LEU TYR PHE LEU VAL LYS ASN SEQRES 23 A 473 PRO HIS VAL LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG SEQRES 24 A 473 VAL LEU VAL ASP PRO VAL PRO SER TYR LYS GLN VAL LYS SEQRES 25 A 473 GLN LEU LYS TYR VAL GLY MET VAL LEU ASN GLU ALA LEU SEQRES 26 A 473 ARG LEU TRP PRO THR VAL PRO ALA PHE SER LEU TYR ALA SEQRES 27 A 473 LYS GLU ASP THR VAL LEU GLY GLY GLU TYR PRO LEU GLU SEQRES 28 A 473 LYS GLY ASP GLU LEU MET VAL LEU ILE PRO GLN LEU HIS SEQRES 29 A 473 ARG ASP LYS THR ILE TRP GLY ASP ASP VAL GLU GLU PHE SEQRES 30 A 473 ARG PRO GLU ARG PHE GLU ASN PRO SER ALA ILE PRO GLN SEQRES 31 A 473 HIS ALA PHE LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS SEQRES 32 A 473 ILE GLY GLN GLN PHE ALA LEU HIS GLU ALA THR LEU VAL SEQRES 33 A 473 LEU GLY MET MET LEU LYS HIS PHE ASP PHE GLU ASP HIS SEQRES 34 A 473 THR ASN TYR GLU LEU ASP ILE LYS GLU THR LEU THR LEU SEQRES 35 A 473 LYS PRO GLU GLY PHE VAL VAL LYS ALA LYS SER LYS LYS SEQRES 36 A 473 ILE PRO LEU GLY GLY ILE PRO SER PRO SER THR GLU GLN SEQRES 37 A 473 SER ALA LYS LYS VAL SEQRES 1 B 473 GLY ALA MET THR ILE LYS GLU MET PRO GLN PRO LYS THR SEQRES 2 B 473 PHE GLY GLU LEU LYS ASN LEU PRO LEU LEU ASN THR ASP SEQRES 3 B 473 LYS PRO VAL GLN ALA LEU MET LYS ILE ALA ASP GLU LEU SEQRES 4 B 473 GLY GLU ILE PHE LYS PHE GLU ALA PRO GLY ARG VAL THR SEQRES 5 B 473 ARG TYR LEU SER SER GLN ARG LEU ILE LYS GLU ALA CYS SEQRES 6 B 473 ASP GLU SER ARG PHE ASP LYS ASN LEU SER GLN ALA LEU SEQRES 7 B 473 LYS PHE VAL ARG ASP PHE ALA GLY ASP GLY LEU PHE THR SEQRES 8 B 473 SER TRP THR HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN SEQRES 9 B 473 ILE LEU LEU PRO SER PHE SER GLN GLN ALA MET LYS GLY SEQRES 10 B 473 TYR HIS ALA MET MET VAL ASP ILE ALA VAL GLN LEU VAL SEQRES 11 B 473 GLN LYS TRP GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU SEQRES 12 B 473 VAL PRO GLU ASP MET THR ARG LEU THR LEU ASP THR ILE SEQRES 13 B 473 GLY LEU CYS GLY PHE ASN TYR ARG PHE ASN SER PHE TYR SEQRES 14 B 473 ARG ASP GLN PRO HIS PRO PHE ILE THR SER MET VAL ARG SEQRES 15 B 473 ALA LEU ASP GLU ALA MET ASN LYS LEU GLN ARG ALA ASN SEQRES 16 B 473 PRO ASP ASP PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE SEQRES 17 B 473 GLN GLU ASP ILE LYS VAL MET ASN ASP LEU VAL ASP LYS SEQRES 18 B 473 ILE ILE ALA ASP ARG LYS ALA SER GLY GLU GLN SER ASP SEQRES 19 B 473 ASP LEU LEU THR HIS MET LEU ASN GLY LYS ASP PRO GLU SEQRES 20 B 473 THR GLY GLU PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN SEQRES 21 B 473 ILE ILE THR PHE LEU ILE ALA GLY HIS GLU THR THR SER SEQRES 22 B 473 GLY LEU LEU SER PHE ALA LEU TYR PHE LEU VAL LYS ASN SEQRES 23 B 473 PRO HIS VAL LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG SEQRES 24 B 473 VAL LEU VAL ASP PRO VAL PRO SER TYR LYS GLN VAL LYS SEQRES 25 B 473 GLN LEU LYS TYR VAL GLY MET VAL LEU ASN GLU ALA LEU SEQRES 26 B 473 ARG LEU TRP PRO THR VAL PRO ALA PHE SER LEU TYR ALA SEQRES 27 B 473 LYS GLU ASP THR VAL LEU GLY GLY GLU TYR PRO LEU GLU SEQRES 28 B 473 LYS GLY ASP GLU LEU MET VAL LEU ILE PRO GLN LEU HIS SEQRES 29 B 473 ARG ASP LYS THR ILE TRP GLY ASP ASP VAL GLU GLU PHE SEQRES 30 B 473 ARG PRO GLU ARG PHE GLU ASN PRO SER ALA ILE PRO GLN SEQRES 31 B 473 HIS ALA PHE LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS SEQRES 32 B 473 ILE GLY GLN GLN PHE ALA LEU HIS GLU ALA THR LEU VAL SEQRES 33 B 473 LEU GLY MET MET LEU LYS HIS PHE ASP PHE GLU ASP HIS SEQRES 34 B 473 THR ASN TYR GLU LEU ASP ILE LYS GLU THR LEU THR LEU SEQRES 35 B 473 LYS PRO GLU GLY PHE VAL VAL LYS ALA LYS SER LYS LYS SEQRES 36 B 473 ILE PRO LEU GLY GLY ILE PRO SER PRO SER THR GLU GLN SEQRES 37 B 473 SER ALA LYS LYS VAL HET HEM A 471 43 HET 140 A1470 22 HET HEM B 471 43 HET 140 B1471 22 HET MES B1490 12 HET MES B1491 12 HET GOL B1480 6 HET GOL B1481 6 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM 140 N-PALMITOYLGLYCINE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN 140 N-HEXADECANOYLGLYCINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 140 2(C18 H35 N O3) FORMUL 7 MES 2(C6 H13 N O4 S) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 11 HOH *933(H2 O) HELIX 1 1 PHE A 11 LYS A 15 5 5 HELIX 2 2 ASN A 16 ASN A 21 5 6 HELIX 3 3 LYS A 24 GLY A 37 1 14 HELIX 4 4 SER A 54 CYS A 62 1 9 HELIX 5 5 SER A 72 GLY A 83 1 12 HELIX 6 6 GLU A 93 LEU A 104 1 12 HELIX 7 7 PRO A 105 PHE A 107 5 3 HELIX 8 8 SER A 108 ARG A 132 1 25 HELIX 9 9 VAL A 141 ASN A 159 1 19 HELIX 10 10 ASN A 163 ARG A 167 5 5 HELIX 11 11 HIS A 171 LEU A 188 1 18 HELIX 12 12 ASP A 195 ALA A 197 5 3 HELIX 13 13 TYR A 198 ALA A 225 1 28 HELIX 14 14 ASP A 232 GLY A 240 1 9 HELIX 15 15 ASP A 250 GLY A 265 1 16 HELIX 16 16 HIS A 266 ASN A 283 1 18 HELIX 17 17 ASN A 283 LEU A 298 1 16 HELIX 18 18 SER A 304 GLN A 310 1 7 HELIX 19 19 LEU A 311 TRP A 325 1 15 HELIX 20 20 ILE A 357 HIS A 361 1 5 HELIX 21 21 ASP A 363 GLY A 368 1 6 HELIX 22 22 ARG A 375 GLU A 380 5 6 HELIX 23 23 ASN A 381 ILE A 385 5 5 HELIX 24 24 ASN A 395 ALA A 399 5 5 HELIX 25 25 GLY A 402 HIS A 420 1 19 HELIX 26 26 PHE B 11 LYS B 15 5 5 HELIX 27 27 ASN B 16 ASN B 21 5 6 HELIX 28 28 LYS B 24 GLY B 37 1 14 HELIX 29 29 SER B 54 CYS B 62 1 9 HELIX 30 30 SER B 72 GLY B 83 1 12 HELIX 31 31 GLU B 93 LEU B 104 1 12 HELIX 32 32 PRO B 105 PHE B 107 5 3 HELIX 33 33 SER B 108 ARG B 132 1 25 HELIX 34 34 VAL B 141 ASN B 159 1 19 HELIX 35 35 ASN B 163 ARG B 167 5 5 HELIX 36 36 HIS B 171 LEU B 188 1 18 HELIX 37 37 ASP B 195 ALA B 197 5 3 HELIX 38 38 TYR B 198 SER B 226 1 29 HELIX 39 39 ASP B 232 GLY B 240 1 9 HELIX 40 40 ASP B 250 GLY B 265 1 16 HELIX 41 41 HIS B 266 ASN B 283 1 18 HELIX 42 42 ASN B 283 LEU B 298 1 16 HELIX 43 43 SER B 304 GLN B 310 1 7 HELIX 44 44 LEU B 311 TRP B 325 1 15 HELIX 45 45 ILE B 357 HIS B 361 1 5 HELIX 46 46 ASP B 363 GLY B 368 1 6 HELIX 47 47 ARG B 375 GLU B 380 5 6 HELIX 48 48 ASN B 381 ILE B 385 5 5 HELIX 49 49 ASN B 395 ALA B 399 5 5 HELIX 50 50 GLY B 402 HIS B 420 1 19 SHEET 1 A 5 ILE A 39 ALA A 44 0 SHEET 2 A 5 ARG A 47 LEU A 52 -1 O ARG A 47 N ALA A 44 SHEET 3 A 5 GLU A 352 LEU A 356 1 O MET A 354 N LEU A 52 SHEET 4 A 5 ALA A 330 ALA A 335 -1 N PHE A 331 O VAL A 355 SHEET 5 A 5 PHE A 67 ASN A 70 -1 N ASN A 70 O SER A 332 SHEET 1 B 3 ILE A 139 GLU A 140 0 SHEET 2 B 3 VAL A 445 SER A 450 -1 O VAL A 446 N ILE A 139 SHEET 3 B 3 PHE A 421 GLU A 424 -1 N ASP A 422 O LYS A 449 SHEET 1 C 2 THR A 339 LEU A 341 0 SHEET 2 C 2 TYR A 345 LEU A 347 -1 O TYR A 345 N LEU A 341 SHEET 1 D 2 ILE A 433 GLU A 435 0 SHEET 2 D 2 LEU A 439 PRO A 441 -1 O LYS A 440 N LYS A 434 SHEET 1 E 5 ILE B 39 ALA B 44 0 SHEET 2 E 5 ARG B 47 LEU B 52 -1 O THR B 49 N PHE B 42 SHEET 3 E 5 GLU B 352 LEU B 356 1 O MET B 354 N LEU B 52 SHEET 4 E 5 ALA B 330 ALA B 335 -1 N PHE B 331 O VAL B 355 SHEET 5 E 5 PHE B 67 ASN B 70 -1 N ASN B 70 O SER B 332 SHEET 1 F 3 ILE B 139 GLU B 140 0 SHEET 2 F 3 VAL B 445 SER B 450 -1 O VAL B 446 N ILE B 139 SHEET 3 F 3 PHE B 421 GLU B 424 -1 N ASP B 422 O LYS B 449 SHEET 1 G 2 THR B 339 LEU B 341 0 SHEET 2 G 2 TYR B 345 LEU B 347 -1 O LEU B 347 N THR B 339 SHEET 1 H 2 ILE B 433 GLU B 435 0 SHEET 2 H 2 LEU B 439 PRO B 441 -1 O LYS B 440 N LYS B 434 LINK SG CYS A 400 FE HEM A 471 1555 1555 2.41 LINK SG CYS B 400 FE HEM B 471 1555 1555 2.41 SITE 1 AC1 26 LYS A 69 LEU A 86 PHE A 87 TRP A 96 SITE 2 AC1 26 PHE A 107 PHE A 261 ALA A 264 GLY A 265 SITE 3 AC1 26 THR A 268 LEU A 272 THR A 327 VAL A 328 SITE 4 AC1 26 PHE A 331 PRO A 392 PHE A 393 GLY A 394 SITE 5 AC1 26 ARG A 398 ALA A 399 CYS A 400 ILE A 401 SITE 6 AC1 26 HOH A1471 HOH A1474 HOH A1476 HOH A1478 SITE 7 AC1 26 HOH A1488 HOH A1510 SITE 1 AC2 26 LYS B 69 LEU B 86 PHE B 87 TRP B 96 SITE 2 AC2 26 PHE B 107 PHE B 261 ALA B 264 GLY B 265 SITE 3 AC2 26 THR B 268 THR B 269 LEU B 272 VAL B 328 SITE 4 AC2 26 PHE B 331 PRO B 392 PHE B 393 GLY B 394 SITE 5 AC2 26 ARG B 398 ALA B 399 CYS B 400 ILE B 401 SITE 6 AC2 26 HOH B1492 HOH B1494 HOH B1495 HOH B1516 SITE 7 AC2 26 HOH B1527 HOH B1549 SITE 1 AC3 8 LEU A 29 TYR A 51 SER A 72 GLN A 73 SITE 2 AC3 8 ALA A 74 ALA A 82 LEU A 188 ALA A 330 SITE 1 AC4 8 LEU B 29 TYR B 51 SER B 72 GLN B 73 SITE 2 AC4 8 ALA B 74 ALA B 82 PHE B 87 LEU B 188 SITE 1 AC5 9 ILE B 366 TRP B 367 ARG B 375 ARG B 378 SITE 2 AC5 9 ALA B 384 ILE B 385 PRO B 386 MES B1491 SITE 3 AC5 9 HOH B1847 SITE 1 AC6 6 THR B 365 ILE B 366 GLY B 368 PRO B 386 SITE 2 AC6 6 GOL B1480 MES B1490 SITE 1 AC7 5 HOH A1737 HOH A1825 ILE B 366 MES B1491 SITE 2 AC7 5 HOH B1524 SITE 1 AC8 3 ARG B 79 GLY B 83 TYR B 256 CRYST1 59.110 148.050 63.670 90.00 98.56 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016918 0.000000 0.002546 0.00000 SCALE2 0.000000 0.006754 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015883 0.00000