HEADER HYDROLASE 16-MAY-05 1ZP5
TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN MMP-8 AND A N-HYDROXYUREA
TITLE 2 INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NEUTROPHIL COLLAGENASE;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: CATALYTIC DOMAIN (80-242);
COMPND 5 SYNONYM: MATRIX METALLOPROTEINASE-8, MMP-8, PMNL COLLAGENASE, PMNL-
COMPND 6 CL;
COMPND 7 EC: 3.4.24.34;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: MMP8, CLG1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSVB30
KEYWDS HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR C.CAMPESTRE,M.AGAMENNONE,P.TORTORELLA,S.PREZIUSO,A.BIASONE,E.GAVUZZO,
AUTHOR 2 G.POCHETTI,F.MAZZA,H.TSCHESCHE,C.GALLINA
REVDAT 5 23-AUG-23 1ZP5 1 REMARK LINK
REVDAT 4 24-JAN-18 1ZP5 1 JRNL
REVDAT 3 11-OCT-17 1ZP5 1 REMARK
REVDAT 2 24-FEB-09 1ZP5 1 VERSN
REVDAT 1 06-DEC-05 1ZP5 0
JRNL AUTH C.CAMPESTRE,M.AGAMENNONE,P.TORTORELLA,S.PREZIUSO,A.BIASONE,
JRNL AUTH 2 E.GAVUZZO,G.POCHETTI,F.MAZZA,O.HILLER,H.TSCHESCHE,
JRNL AUTH 3 V.CONSALVI,C.GALLINA
JRNL TITL N-HYDROXYUREA AS ZINC BINDING GROUP IN MATRIX
JRNL TITL 2 METALLOPROTEINASE INHIBITION: MODE OF BINDING IN A COMPLEX
JRNL TITL 3 WITH MMP-8.
JRNL REF BIOORG.MED.CHEM.LETT. V. 16 20 2006
JRNL REFN ISSN 0960-894X
JRNL PMID 16242329
JRNL DOI 10.1016/J.BMCL.2005.09.057
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH E.M.MURI,M.J.NIETO,R.D.SINDELAR,J.S.WILLIAMSON
REMARK 1 TITL HYDROXAMIC ACIDS AS PHARMACOLOGICAL AGENTS.
REMARK 1 REF CURR.MED.CHEM. V. 9 1631 2002
REMARK 1 REFN ISSN 0929-8673
REMARK 1 PMID 12171558
REMARK 1 REFERENCE 2
REMARK 1 AUTH F.GRAMS,M.CRIMMIN,L.HINNES,P.HUXLEY,M.PIEPER,H.TSCHESCHE,
REMARK 1 AUTH 2 W.BODE
REMARK 1 TITL STRUCTURE DETERMINATION AND ANALYSIS OF HUMAN NEUTROPHIL
REMARK 1 TITL 2 COLLAGENASE COMPLEXED WITH A HYDROXAMATE INHIBITOR.
REMARK 1 REF BIOCHEMISTRY V. 34 14012 1995
REMARK 1 REFN ISSN 0006-2960
REMARK 1 PMID 7577999
REMARK 1 DOI 10.1021/BI00043A007
REMARK 1 REFERENCE 3
REMARK 1 AUTH P.J.HAJDUCK,G.SHEPPARD,D.G.NETTESHEIM,E.T.OLEJNICZAK,
REMARK 1 AUTH 2 S.B.SHUKER,R.P.MEADOWS,D.H.STEINMAN,G.M.CARRERA,
REMARK 1 AUTH 3 P.A.MARCOTTE,J.SEVERIN,K.WALTER,H.SMITH,E.GUBBINS,R.SIMMER,
REMARK 1 AUTH 4 T.F.HOLZMAN,D.W.MORGAN,S.K.DAVIDSEN,J.B.SUMMERS,S.W.FESIK
REMARK 1 TITL DISCOVERY OF POTENT NON PEPTIDE INHIBITORS OF STROMELYSIN
REMARK 1 TITL 2 USING SAR BY NMR.
REMARK 1 REF J.AM.CHEM.SOC. V. 119 5818 1997
REMARK 1 REFN ISSN 0002-7863
REMARK 1 DOI 10.1021/JA9702778
REMARK 1 REFERENCE 4
REMARK 1 AUTH M.R.MICHAELIDES,J.F.DELLARIA,J.GONG,J.H.HOLMS,J.J.BOUSKA,
REMARK 1 AUTH 2 J.STACEY,C.K.WADA,H.R.HEYMAN,M.L.CURTIN,Y.GUO,
REMARK 1 AUTH 3 C.L.GOODFELLOW,I.B.ELMORE,D.H.ALBERT,T.J.MAGOC,P.A.MARCOTTE,
REMARK 1 AUTH 4 D.W.MORGAN,S.K.DAVIDSEN
REMARK 1 TITL BIARYL ETHER RETROHYDROXAMATES AS POTENT, LONG-LIVED, ORALLY
REMARK 1 TITL 2 BIOAVAILABLE MMP INHIBITORS.
REMARK 1 REF BIOORG.MED.CHEM.LETT. V. 11 1553 2001
REMARK 1 REFN ISSN 0960-894X
REMARK 1 PMID 11412979
REMARK 1 DOI 10.1016/S0960-894X(01)00031-2
REMARK 2
REMARK 2 RESOLUTION. 1.80 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS 1.0
REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-
REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,
REMARK 3 : READ,RICE,SIMONSON,WARREN
REMARK 3
REMARK 3 REFINEMENT TARGET : ENGH & HUBER
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL
REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL
REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 NUMBER OF REFLECTIONS : 9738
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : NULL
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING SET) : 0.216
REMARK 3 FREE R VALUE : 0.251
REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 FREE R VALUE TEST SET COUNT : 974
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL
REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL
REMARK 3 BIN R VALUE (WORKING SET) : NULL
REMARK 3 BIN FREE R VALUE : NULL
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1283
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 27
REMARK 3 SOLVENT ATOMS : 125
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 18.20
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM SIGMAA (A) : NULL
REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL
REMARK 3
REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM C-V SIGMAA (A) : NULL
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.007
REMARK 3 BOND ANGLES (DEGREES) : 1.400
REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL
REMARK 3 IMPROPER ANGLES (DEGREES) : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL MODEL : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELING.
REMARK 3 METHOD USED : NULL
REMARK 3 KSOL : NULL
REMARK 3 BSOL : NULL
REMARK 3
REMARK 3 NCS MODEL : NULL
REMARK 3
REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT
REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL
REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL
REMARK 3
REMARK 3 PARAMETER FILE 1 : NULL
REMARK 3 TOPOLOGY FILE 1 : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1ZP5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-05.
REMARK 100 THE DEPOSITION ID IS D_1000032978.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 18-MAY-04
REMARK 200 TEMPERATURE (KELVIN) : 100.0
REMARK 200 PH : 6.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ELETTRA
REMARK 200 BEAMLINE : 5.2R
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.00
REMARK 200 MONOCHROMATOR : GRAPHITE
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10932
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800
REMARK 200 RESOLUTION RANGE LOW (A) : 30.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8
REMARK 200 DATA REDUNDANCY : 6.000
REMARK 200 R MERGE (I) : 0.07000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86
REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6
REMARK 200 DATA REDUNDANCY IN SHELL : 5.00
REMARK 200 R MERGE FOR SHELL (I) : 0.37200
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.480
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: AMORE
REMARK 200 STARTING MODEL: PDB ENTRY 1I76
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 20.83
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.57
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000, MES/NAOH, NA PHOSPHATE, PH
REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.19350
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.66550
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.33750
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.66550
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.19350
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.33750
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 OD1 ASN A 150 OG1 THR A 185 3555 2.12
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 SER A 151 N - CA - C ANGL. DEV. = -18.8 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 145 -131.11 40.32
REMARK 500 HIS A 147 41.35 -143.19
REMARK 500 ASN A 157 -167.43 59.62
REMARK 500 THR A 185 -161.72 -108.20
REMARK 500 GLU A 223 94.42 -42.80
REMARK 500 SER A 225 -81.62 -50.89
REMARK 500 TYR A 227 109.00 -51.63
REMARK 500 LEU A 229 125.89 -34.32
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 996 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 137 O
REMARK 620 2 GLY A 169 O 160.9
REMARK 620 3 GLY A 171 O 92.8 105.5
REMARK 620 4 ASP A 173 OD1 89.2 91.6 103.5
REMARK 620 5 HOH A1093 O 117.2 44.3 149.8 81.5
REMARK 620 6 HOH A1098 O 81.7 79.7 150.4 105.5 43.4
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 998 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 147 NE2
REMARK 620 2 ASP A 149 OD2 115.4
REMARK 620 3 HIS A 162 NE2 110.6 112.6
REMARK 620 4 HIS A 175 ND1 111.2 91.2 114.8
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 997 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 154 OD1
REMARK 620 2 GLY A 155 O 89.6
REMARK 620 3 ASN A 157 O 88.0 81.7
REMARK 620 4 ILE A 159 O 88.4 175.8 102.0
REMARK 620 5 ASP A 177 OD2 90.7 88.0 169.6 88.2
REMARK 620 6 GLU A 180 OE2 169.9 99.7 89.7 82.5 93.4
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 999 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 197 NE2
REMARK 620 2 HIS A 201 NE2 105.3
REMARK 620 3 HIS A 207 NE2 104.1 101.9
REMARK 620 4 2NI A1000 O3 110.0 119.6 114.5
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 996
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 997
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 998
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 999
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2NI A 1000
DBREF 1ZP5 A 80 242 UNP P22894 MMP8_HUMAN 100 262
SEQRES 1 A 163 MET LEU THR PRO GLY ASN PRO LYS TRP GLU ARG THR ASN
SEQRES 2 A 163 LEU THR TYR ARG ILE ARG ASN TYR THR PRO GLN LEU SER
SEQRES 3 A 163 GLU ALA GLU VAL GLU ARG ALA ILE LYS ASP ALA PHE GLU
SEQRES 4 A 163 LEU TRP SER VAL ALA SER PRO LEU ILE PHE THR ARG ILE
SEQRES 5 A 163 SER GLN GLY GLU ALA ASP ILE ASN ILE ALA PHE TYR GLN
SEQRES 6 A 163 ARG ASP HIS GLY ASP ASN SER PRO PHE ASP GLY PRO ASN
SEQRES 7 A 163 GLY ILE LEU ALA HIS ALA PHE GLN PRO GLY GLN GLY ILE
SEQRES 8 A 163 GLY GLY ASP ALA HIS PHE ASP ALA GLU GLU THR TRP THR
SEQRES 9 A 163 ASN THR SER ALA ASN TYR ASN LEU PHE LEU VAL ALA ALA
SEQRES 10 A 163 HIS GLU PHE GLY HIS SER LEU GLY LEU ALA HIS SER SER
SEQRES 11 A 163 ASP PRO GLY ALA LEU MET TYR PRO ASN TYR ALA PHE ARG
SEQRES 12 A 163 GLU THR SER ASN TYR SER LEU PRO GLN ASP ASP ILE ASP
SEQRES 13 A 163 GLY ILE GLN ALA ILE TYR GLY
HET CA A 996 1
HET CA A 997 1
HET ZN A 998 1
HET ZN A 999 1
HET 2NI A1000 23
HETNAM CA CALCIUM ION
HETNAM ZN ZINC ION
HETNAM 2NI N-{2-[(4'-CYANO-1,1'-BIPHENYL-4-YL)OXY]ETHYL}-N'-
HETNAM 2 2NI HYDROXY-N-METHYLUREA
FORMUL 2 CA 2(CA 2+)
FORMUL 4 ZN 2(ZN 2+)
FORMUL 6 2NI C17 H17 N3 O3
FORMUL 7 HOH *125(H2 O)
HELIX 1 1 SER A 105 VAL A 122 1 18
HELIX 2 2 ASN A 190 LEU A 203 1 14
HELIX 3 3 PRO A 230 GLY A 242 1 13
SHEET 1 A 5 ILE A 127 ARG A 130 0
SHEET 2 A 5 ASN A 92 ILE A 97 1 N LEU A 93 O THR A 129
SHEET 3 A 5 ILE A 138 TYR A 143 1 O ILE A 140 N ARG A 96
SHEET 4 A 5 ALA A 174 ASP A 177 1 O PHE A 176 N ALA A 141
SHEET 5 A 5 ALA A 161 ALA A 163 -1 N HIS A 162 O HIS A 175
LINK O ASP A 137 CA CA A 996 1555 1555 2.53
LINK NE2 HIS A 147 ZN ZN A 998 1555 1555 2.08
LINK OD2 ASP A 149 ZN ZN A 998 1555 1555 1.98
LINK OD1 ASP A 154 CA CA A 997 1555 1555 2.47
LINK O GLY A 155 CA CA A 997 1555 1555 2.43
LINK O ASN A 157 CA CA A 997 1555 1555 2.40
LINK O ILE A 159 CA CA A 997 1555 1555 2.45
LINK NE2 HIS A 162 ZN ZN A 998 1555 1555 2.05
LINK O GLY A 169 CA CA A 996 1555 1555 2.65
LINK O GLY A 171 CA CA A 996 1555 1555 2.54
LINK OD1 ASP A 173 CA CA A 996 1555 1555 2.55
LINK ND1 HIS A 175 ZN ZN A 998 1555 1555 2.07
LINK OD2 ASP A 177 CA CA A 997 1555 1555 2.43
LINK OE2 GLU A 180 CA CA A 997 1555 1555 2.43
LINK NE2 HIS A 197 ZN ZN A 999 1555 1555 2.08
LINK NE2 HIS A 201 ZN ZN A 999 1555 1555 2.06
LINK NE2 HIS A 207 ZN ZN A 999 1555 1555 2.11
LINK CA CA A 996 O HOH A1093 1555 1555 3.21
LINK CA CA A 996 O HOH A1098 1555 1555 2.67
LINK ZN ZN A 999 O3 2NI A1000 1555 1555 2.26
CISPEP 1 ASN A 188 TYR A 189 0 -0.35
SITE 1 AC1 5 ASP A 137 GLY A 169 GLY A 171 ASP A 173
SITE 2 AC1 5 HOH A1098
SITE 1 AC2 6 ASP A 154 GLY A 155 ASN A 157 ILE A 159
SITE 2 AC2 6 ASP A 177 GLU A 180
SITE 1 AC3 4 HIS A 147 ASP A 149 HIS A 162 HIS A 175
SITE 1 AC4 4 HIS A 197 HIS A 201 HIS A 207 2NI A1000
SITE 1 AC5 16 ILE A 159 LEU A 160 ALA A 161 LEU A 193
SITE 2 AC5 16 HIS A 197 GLU A 198 HIS A 207 LEU A 214
SITE 3 AC5 16 TYR A 216 PRO A 217 ASN A 218 TYR A 219
SITE 4 AC5 16 ALA A 220 ZN A 999 HOH A1069 HOH A1105
CRYST1 32.387 52.675 67.331 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.030877 0.000000 0.000000 0.00000
SCALE2 0.000000 0.018984 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014852 0.00000