HEADER TRANSCRIPTION ACTIVATOR 17-MAY-05 1ZPQ TITLE STRUCTURE OF BACTERIOPHAGE LAMBDA CII PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATORY PROTEIN CII; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE LAMBDA; SOURCE 3 ORGANISM_TAXID: 10710; SOURCE 4 GENE: CII; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HELIX-TURN-HELIX, TRANSCRIPTION ACTIVATION, STRUCTURAL GENOMICS, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, TRANSCRIPTION ACTIVATOR EXPDTA X-RAY DIFFRACTION AUTHOR D.JAIN,Y.KIM,K.L.MAXWELL,S.BEASLEY,G.N.GUSSIN,A.M.EDWARDS, AUTHOR 2 A.JOACHIMIAK,S.A.DARST,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 14-FEB-24 1ZPQ 1 REMARK REVDAT 4 05-OCT-11 1ZPQ 1 AUTHOR VERSN REVDAT 3 24-FEB-09 1ZPQ 1 VERSN REVDAT 2 14-NOV-06 1ZPQ 1 AUTHOR DBREF KEYWDS REMARK REVDAT 2 2 1 MASTER REVDAT 1 23-AUG-05 1ZPQ 0 JRNL AUTH D.JAIN,Y.KIM,K.L.MAXWELL,S.BEASLEY,R.ZHANG,G.N.GUSSIN, JRNL AUTH 2 A.M.EDWARDS,S.A.DARST JRNL TITL CRYSTAL STRUCTURE OF BACTERIOPHAGE LAMBDACII AND ITS DNA JRNL TITL 2 COMPLEX. JRNL REF MOL.CELL V. 19 259 2005 JRNL REFN ISSN 1097-2765 JRNL PMID 16039594 JRNL DOI 10.1016/J.MOLCEL.2005.06.006 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 11571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 442 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2392 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZPQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032998. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979262 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11571 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 38.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39800 REMARK 200 FOR SHELL : 2.610 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.72500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.72500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.78000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.08000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.78000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.08000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.72500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.78000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.08000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.72500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.78000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.08000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ARG A 3 REMARK 465 ALA A 4 REMARK 465 ASN A 5 REMARK 465 ASN A 80 REMARK 465 LYS A 81 REMARK 465 LYS A 82 REMARK 465 ARG A 83 REMARK 465 PRO A 84 REMARK 465 ALA A 85 REMARK 465 ALA A 86 REMARK 465 THR A 87 REMARK 465 GLU A 88 REMARK 465 ARG A 89 REMARK 465 SER A 90 REMARK 465 GLU A 91 REMARK 465 GLN A 92 REMARK 465 ILE A 93 REMARK 465 GLN A 94 REMARK 465 MET A 95 REMARK 465 GLU A 96 REMARK 465 PHE A 97 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 ARG B 3 REMARK 465 ALA B 4 REMARK 465 ASN B 5 REMARK 465 LYS B 6 REMARK 465 LYS B 82 REMARK 465 ARG B 83 REMARK 465 PRO B 84 REMARK 465 ALA B 85 REMARK 465 ALA B 86 REMARK 465 THR B 87 REMARK 465 GLU B 88 REMARK 465 ARG B 89 REMARK 465 SER B 90 REMARK 465 GLU B 91 REMARK 465 GLN B 92 REMARK 465 ILE B 93 REMARK 465 GLN B 94 REMARK 465 MET B 95 REMARK 465 GLU B 96 REMARK 465 PHE B 97 REMARK 465 MET C 1 REMARK 465 VAL C 2 REMARK 465 LYS C 81 REMARK 465 LYS C 82 REMARK 465 ARG C 83 REMARK 465 PRO C 84 REMARK 465 ALA C 85 REMARK 465 ALA C 86 REMARK 465 THR C 87 REMARK 465 GLU C 88 REMARK 465 ARG C 89 REMARK 465 SER C 90 REMARK 465 GLU C 91 REMARK 465 GLN C 92 REMARK 465 ILE C 93 REMARK 465 GLN C 94 REMARK 465 MET C 95 REMARK 465 GLU C 96 REMARK 465 PHE C 97 REMARK 465 MET D 1 REMARK 465 VAL D 2 REMARK 465 ARG D 3 REMARK 465 LYS D 82 REMARK 465 ARG D 83 REMARK 465 PRO D 84 REMARK 465 ALA D 85 REMARK 465 ALA D 86 REMARK 465 THR D 87 REMARK 465 GLU D 88 REMARK 465 ARG D 89 REMARK 465 SER D 90 REMARK 465 GLU D 91 REMARK 465 GLN D 92 REMARK 465 ILE D 93 REMARK 465 GLN D 94 REMARK 465 MET D 95 REMARK 465 GLU D 96 REMARK 465 PHE D 97 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 74 CG1 CG2 REMARK 470 ARG C 42 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 45 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 46 N ASP A 46 CA 0.220 REMARK 500 TRP A 60 N TRP A 60 CA 0.307 REMARK 500 PHE B 51 CG PHE B 51 CD2 0.092 REMARK 500 ALA C 30 N ALA C 30 CA 0.406 REMARK 500 SER C 52 CA SER C 52 CB -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 GLN A 39 CB - CA - C ANGL. DEV. = -16.1 DEGREES REMARK 500 ASP A 46 C - N - CA ANGL. DEV. = -27.0 DEGREES REMARK 500 ASP A 46 CA - CB - CG ANGL. DEV. = -19.4 DEGREES REMARK 500 TRP A 60 C - N - CA ANGL. DEV. = -19.9 DEGREES REMARK 500 TRP A 60 CB - CA - C ANGL. DEV. = 12.0 DEGREES REMARK 500 TRP A 60 N - CA - CB ANGL. DEV. = -28.1 DEGREES REMARK 500 TRP A 60 N - CA - C ANGL. DEV. = 30.2 DEGREES REMARK 500 VAL A 62 N - CA - CB ANGL. DEV. = 22.4 DEGREES REMARK 500 ASP A 64 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 65 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG B 7 CA - C - N ANGL. DEV. = 16.1 DEGREES REMARK 500 ARG B 7 O - C - N ANGL. DEV. = -11.6 DEGREES REMARK 500 ILE B 40 N - CA - CB ANGL. DEV. = -14.5 DEGREES REMARK 500 ASP B 46 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 GLY B 61 N - CA - C ANGL. DEV. = 32.0 DEGREES REMARK 500 ASP B 64 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASN B 80 CB - CA - C ANGL. DEV. = 13.5 DEGREES REMARK 500 MET C 23 N - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 ALA C 30 N - CA - CB ANGL. DEV. = -20.2 DEGREES REMARK 500 ALA C 30 N - CA - C ANGL. DEV. = 24.4 DEGREES REMARK 500 ILE C 40 C - N - CA ANGL. DEV. = 16.1 DEGREES REMARK 500 ILE C 40 CB - CA - C ANGL. DEV. = -14.7 DEGREES REMARK 500 ILE C 40 N - CA - C ANGL. DEV. = 22.0 DEGREES REMARK 500 ASP C 65 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP D 36 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 7 21.88 42.44 REMARK 500 GLU A 27 -38.98 -145.98 REMARK 500 VAL A 35 146.76 132.41 REMARK 500 VAL A 62 65.45 31.74 REMARK 500 ASP A 64 -71.76 -2.40 REMARK 500 ASN B 8 -159.75 -121.60 REMARK 500 ALA B 10 -32.46 -39.68 REMARK 500 VAL B 35 117.52 -32.79 REMARK 500 ILE B 40 -25.79 -35.79 REMARK 500 LEU B 58 5.59 -66.40 REMARK 500 VAL B 62 129.27 -20.02 REMARK 500 ASP B 64 92.33 -69.42 REMARK 500 ALA C 4 130.56 -18.78 REMARK 500 SER C 15 -78.35 -53.00 REMARK 500 ALA C 22 -43.87 -134.08 REMARK 500 MET C 23 -93.46 -67.16 REMARK 500 VAL C 33 23.63 -144.39 REMARK 500 ASP C 36 -174.38 -39.14 REMARK 500 LYS C 37 -78.91 -26.28 REMARK 500 SER C 38 -67.59 -121.21 REMARK 500 ILE C 40 74.52 59.50 REMARK 500 LYS C 44 -39.62 -39.31 REMARK 500 VAL C 62 -85.75 -164.03 REMARK 500 VAL C 63 85.46 30.27 REMARK 500 LEU C 78 71.71 -115.77 REMARK 500 THR C 79 -22.06 165.04 REMARK 500 ALA D 30 -21.08 175.31 REMARK 500 VAL D 33 52.51 -161.13 REMARK 500 VAL D 35 99.43 85.03 REMARK 500 LYS D 37 -54.35 -25.15 REMARK 500 SER D 41 106.61 69.79 REMARK 500 ARG D 42 27.30 85.28 REMARK 500 TRP D 43 -47.79 -135.97 REMARK 500 PHE D 51 36.55 -87.10 REMARK 500 ALA D 75 6.13 -67.58 REMARK 500 ASN D 80 -48.22 -140.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 7 ASN A 8 148.72 REMARK 500 ASN A 8 GLU A 9 147.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU D 58 -10.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5803 RELATED DB: TARGETDB DBREF 1ZPQ A 1 97 UNP P03042 RPC2_LAMBD 1 97 DBREF 1ZPQ B 1 97 UNP P03042 RPC2_LAMBD 1 97 DBREF 1ZPQ C 1 97 UNP P03042 RPC2_LAMBD 1 97 DBREF 1ZPQ D 1 97 UNP P03042 RPC2_LAMBD 1 97 SEQRES 1 A 97 MET VAL ARG ALA ASN LYS ARG ASN GLU ALA LEU ARG ILE SEQRES 2 A 97 GLU SER ALA LEU LEU ASN LYS ILE ALA MET LEU GLY THR SEQRES 3 A 97 GLU LYS THR ALA GLU ALA VAL GLY VAL ASP LYS SER GLN SEQRES 4 A 97 ILE SER ARG TRP LYS ARG ASP TRP ILE PRO LYS PHE SER SEQRES 5 A 97 MET LEU LEU ALA VAL LEU GLU TRP GLY VAL VAL ASP ASP SEQRES 6 A 97 ASP MET ALA ARG LEU ALA ARG GLN VAL ALA ALA ILE LEU SEQRES 7 A 97 THR ASN LYS LYS ARG PRO ALA ALA THR GLU ARG SER GLU SEQRES 8 A 97 GLN ILE GLN MET GLU PHE SEQRES 1 B 97 MET VAL ARG ALA ASN LYS ARG ASN GLU ALA LEU ARG ILE SEQRES 2 B 97 GLU SER ALA LEU LEU ASN LYS ILE ALA MET LEU GLY THR SEQRES 3 B 97 GLU LYS THR ALA GLU ALA VAL GLY VAL ASP LYS SER GLN SEQRES 4 B 97 ILE SER ARG TRP LYS ARG ASP TRP ILE PRO LYS PHE SER SEQRES 5 B 97 MET LEU LEU ALA VAL LEU GLU TRP GLY VAL VAL ASP ASP SEQRES 6 B 97 ASP MET ALA ARG LEU ALA ARG GLN VAL ALA ALA ILE LEU SEQRES 7 B 97 THR ASN LYS LYS ARG PRO ALA ALA THR GLU ARG SER GLU SEQRES 8 B 97 GLN ILE GLN MET GLU PHE SEQRES 1 C 97 MET VAL ARG ALA ASN LYS ARG ASN GLU ALA LEU ARG ILE SEQRES 2 C 97 GLU SER ALA LEU LEU ASN LYS ILE ALA MET LEU GLY THR SEQRES 3 C 97 GLU LYS THR ALA GLU ALA VAL GLY VAL ASP LYS SER GLN SEQRES 4 C 97 ILE SER ARG TRP LYS ARG ASP TRP ILE PRO LYS PHE SER SEQRES 5 C 97 MET LEU LEU ALA VAL LEU GLU TRP GLY VAL VAL ASP ASP SEQRES 6 C 97 ASP MET ALA ARG LEU ALA ARG GLN VAL ALA ALA ILE LEU SEQRES 7 C 97 THR ASN LYS LYS ARG PRO ALA ALA THR GLU ARG SER GLU SEQRES 8 C 97 GLN ILE GLN MET GLU PHE SEQRES 1 D 97 MET VAL ARG ALA ASN LYS ARG ASN GLU ALA LEU ARG ILE SEQRES 2 D 97 GLU SER ALA LEU LEU ASN LYS ILE ALA MET LEU GLY THR SEQRES 3 D 97 GLU LYS THR ALA GLU ALA VAL GLY VAL ASP LYS SER GLN SEQRES 4 D 97 ILE SER ARG TRP LYS ARG ASP TRP ILE PRO LYS PHE SER SEQRES 5 D 97 MET LEU LEU ALA VAL LEU GLU TRP GLY VAL VAL ASP ASP SEQRES 6 D 97 ASP MET ALA ARG LEU ALA ARG GLN VAL ALA ALA ILE LEU SEQRES 7 D 97 THR ASN LYS LYS ARG PRO ALA ALA THR GLU ARG SER GLU SEQRES 8 D 97 GLN ILE GLN MET GLU PHE FORMUL 5 HOH *88(H2 O) HELIX 1 1 ASN A 8 GLY A 25 1 18 HELIX 2 2 THR A 29 GLY A 34 1 6 HELIX 3 3 ASP A 36 ASP A 46 1 11 HELIX 4 4 ASP A 46 LEU A 58 1 13 HELIX 5 5 VAL A 63 LEU A 78 1 16 HELIX 6 6 GLU B 9 GLY B 25 1 17 HELIX 7 7 GLY B 25 VAL B 33 1 9 HELIX 8 8 GLN B 39 LEU B 58 1 20 HELIX 9 9 ASP B 65 ASN B 80 1 16 HELIX 10 10 LYS C 6 ILE C 21 1 16 HELIX 11 11 LEU C 24 VAL C 33 1 10 HELIX 12 12 ILE C 40 LEU C 58 1 19 HELIX 13 13 ASP C 64 LEU C 78 1 15 HELIX 14 14 ALA D 4 GLY D 25 1 22 HELIX 15 15 PRO D 49 GLU D 59 1 11 HELIX 16 16 GLU D 59 LEU D 70 1 12 HELIX 17 17 LEU D 70 ALA D 75 1 6 HELIX 18 18 ALA D 75 ASN D 80 1 6 CRYST1 59.560 108.160 111.450 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016790 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009246 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008973 0.00000