HEADER TRANSFERASE 15-OCT-96 1ZPR TITLE E. COLI THYMIDYLATE SYNTHASE MUTANT E58Q IN COMPLEX WITH CB3717 AND TITLE 2 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (DUMP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.45; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 CELL_LINE: X2913; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: BLUESCRIPT VECTOR; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTHYA-E58Q; SOURCE 9 EXPRESSION_SYSTEM_GENE: THYA KEYWDS TRANSFERASE, ACTIVE SITE MUTANT, REACTION INTERMEDIATE EXPDTA X-RAY DIFFRACTION AUTHOR C.R.SAGE,T.J.STOUT,E.E.RUTENBER,R.M.STROUD REVDAT 4 03-NOV-21 1ZPR 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1ZPR 1 VERSN REVDAT 2 24-FEB-09 1ZPR 1 VERSN REVDAT 1 07-JUL-97 1ZPR 0 JRNL AUTH C.R.SAGE,E.E.RUTENBER,T.J.STOUT,R.M.STROUD JRNL TITL AN ESSENTIAL ROLE FOR WATER IN AN ENZYME REACTION MECHANISM: JRNL TITL 2 THE CRYSTAL STRUCTURE OF THE THYMIDYLATE SYNTHASE MUTANT JRNL TITL 3 E58Q. JRNL REF BIOCHEMISTRY V. 35 16270 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8973201 JRNL DOI 10.1021/BI961269R REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.R.MONTFORT,K.M.PERRY,E.B.FAUMAN,J.S.FINER-MOORE,G.F.MALEY, REMARK 1 AUTH 2 L.HARDY,F.MALEY,R.M.STROUD REMARK 1 TITL STRUCTURE, MULTIPLE SITE BINDING, AND SEGMENTAL REMARK 1 TITL 2 ACCOMMODATION IN THYMIDYLATE SYNTHASE ON BINDING DUMP AND AN REMARK 1 TITL 3 ANTI-FOLATE REMARK 1 REF BIOCHEMISTRY V. 29 6964 1990 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.3 REMARK 3 NUMBER OF REFLECTIONS : 20033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1993 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.65 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2820 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 323 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4306 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 2.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.370 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.970 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.410 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.570 ; 1.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.200 ; 2.000 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : SAGEE58Q_PARAM19X.PRO REMARK 3 PARAMETER FILE 2 : SAGEE58Q_PARAM11.WAT REMARK 3 PARAMETER FILE 3 : SAGEE58Q_PARAMED.LIG REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : SAGEE58Q_TOPH19X.PRO REMARK 3 TOPOLOGY FILE 2 : SAGEE58Q_TOPH11.WAT REMARK 3 TOPOLOGY FILE 3 : SAGEE58Q_TOPO_COV.DUMP REMARK 3 TOPOLOGY FILE 4 : SAGEE58Q_TOPO.CB3 REMARK 3 TOPOLOGY FILE 5 : SAGEE58Q_TOPO.FORMIC REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZPR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JAN-95 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23346 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.08900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.08900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.08900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 57 NE2 HIS A 57 CD2 -0.072 REMARK 500 HIS A 73 NE2 HIS A 73 CD2 -0.071 REMARK 500 HIS A 108 NE2 HIS A 108 CD2 -0.077 REMARK 500 HIS A 207 NE2 HIS A 207 CD2 -0.066 REMARK 500 HIS A 212 NE2 HIS A 212 CD2 -0.072 REMARK 500 HIS A 217 NE2 HIS A 217 CD2 -0.069 REMARK 500 HIS A 255 NE2 HIS A 255 CD2 -0.071 REMARK 500 HIS B 51 NE2 HIS B 51 CD2 -0.072 REMARK 500 HIS B 57 NE2 HIS B 57 CD2 -0.076 REMARK 500 HIS B 73 NE2 HIS B 73 CD2 -0.073 REMARK 500 HIS B 147 NE2 HIS B 147 CD2 -0.069 REMARK 500 HIS B 217 NE2 HIS B 217 CD2 -0.066 REMARK 500 HIS B 255 NE2 HIS B 255 CD2 -0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 21 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 LEU A 52 CB - CG - CD2 ANGL. DEV. = -12.0 DEGREES REMARK 500 TRP A 61 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP A 61 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP A 80 CD1 - CG - CD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP A 80 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP A 83 CD1 - CG - CD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP A 83 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP A 98 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A 98 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 TRP A 101 CD1 - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 TRP A 101 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 VAL A 130 CG1 - CB - CG2 ANGL. DEV. = -10.2 DEGREES REMARK 500 TRP A 133 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP A 133 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 HIS A 147 CA - CB - CG ANGL. DEV. = 10.3 DEGREES REMARK 500 LYS A 158 CB - CG - CD ANGL. DEV. = -15.7 DEGREES REMARK 500 TYR A 164 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 TRP A 201 CD1 - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 TRP A 201 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 234 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 HIS B 51 CA - CB - CG ANGL. DEV. = 13.1 DEGREES REMARK 500 HIS B 51 CB - CG - CD2 ANGL. DEV. = -10.5 DEGREES REMARK 500 TRP B 61 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 TRP B 80 CD1 - CG - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP B 80 CE2 - CD2 - CG ANGL. DEV. = -6.7 DEGREES REMARK 500 TRP B 83 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP B 83 CE2 - CD2 - CG ANGL. DEV. = -6.3 DEGREES REMARK 500 TRP B 83 CG - CD2 - CE3 ANGL. DEV. = 5.6 DEGREES REMARK 500 VAL B 93 CA - CB - CG2 ANGL. DEV. = -9.7 DEGREES REMARK 500 TRP B 98 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP B 98 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 TRP B 101 CD1 - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 TRP B 101 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP B 133 CD1 - CG - CD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP B 133 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 LEU B 143 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 TRP B 201 CD1 - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP B 201 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 76 71.21 27.63 REMARK 500 VAL A 93 -154.66 -85.30 REMARK 500 ALA A 100 63.82 -164.31 REMARK 500 ASP A 122 60.54 -153.51 REMARK 500 GLU B 86 -39.91 -33.36 REMARK 500 TYR B 94 -62.87 -17.22 REMARK 500 ALA B 100 58.69 -158.92 REMARK 500 PRO B 226 136.92 -38.78 REMARK 500 PRO B 228 -174.52 -67.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 21 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CB3 A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CB3 B 300 DBREF 1ZPR A 2 264 UNP P0A884 TYSY_ECOLI 2 264 DBREF 1ZPR B 2 264 UNP P0A884 TYSY_ECOLI 2 264 SEQADV 1ZPR GLN A 58 UNP P0A884 GLU 58 ENGINEERED MUTATION SEQADV 1ZPR GLN B 58 UNP P0A884 GLU 58 ENGINEERED MUTATION SEQRES 1 A 264 CXM LYS GLN TYR LEU GLU LEU MET GLN LYS VAL LEU ASP SEQRES 2 A 264 GLU GLY THR GLN LYS ASN ASP ARG THR GLY THR GLY THR SEQRES 3 A 264 LEU SER ILE PHE GLY HIS GLN MET ARG PHE ASN LEU GLN SEQRES 4 A 264 ASP GLY PHE PRO LEU VAL THR THR LYS ARG CYS HIS LEU SEQRES 5 A 264 ARG SER ILE ILE HIS GLN LEU LEU TRP PHE LEU GLN GLY SEQRES 6 A 264 ASP THR ASN ILE ALA TYR LEU HIS GLU ASN ASN VAL THR SEQRES 7 A 264 ILE TRP ASP GLU TRP ALA ASP GLU ASN GLY ASP LEU GLY SEQRES 8 A 264 PRO VAL TYR GLY LYS GLN TRP ARG ALA TRP PRO THR PRO SEQRES 9 A 264 ASP GLY ARG HIS ILE ASP GLN ILE THR THR VAL LEU ASN SEQRES 10 A 264 GLN LEU LYS ASN ASP PRO ASP SER ARG ARG ILE ILE VAL SEQRES 11 A 264 SER ALA TRP ASN VAL GLY GLU LEU ASP LYS MET ALA LEU SEQRES 12 A 264 ALA PRO CYS HIS ALA PHE PHE GLN PHE TYR VAL ALA ASP SEQRES 13 A 264 GLY LYS LEU SER CYS GLN LEU TYR GLN ARG SER CYS ASP SEQRES 14 A 264 VAL PHE LEU GLY LEU PRO PHE ASN ILE ALA SER TYR ALA SEQRES 15 A 264 LEU LEU VAL HIS MET MET ALA GLN GLN CYS ASP LEU GLU SEQRES 16 A 264 VAL GLY ASP PHE VAL TRP THR GLY GLY ASP THR HIS LEU SEQRES 17 A 264 TYR SER ASN HIS MET ASP GLN THR HIS LEU GLN LEU SER SEQRES 18 A 264 ARG GLU PRO ARG PRO LEU PRO LYS LEU ILE ILE LYS ARG SEQRES 19 A 264 LYS PRO GLU SER ILE PHE ASP TYR ARG PHE GLU ASP PHE SEQRES 20 A 264 GLU ILE GLU GLY TYR ASP PRO HIS PRO GLY ILE LYS ALA SEQRES 21 A 264 PRO VAL ALA ILE SEQRES 1 B 264 CXM LYS GLN TYR LEU GLU LEU MET GLN LYS VAL LEU ASP SEQRES 2 B 264 GLU GLY THR GLN LYS ASN ASP ARG THR GLY THR GLY THR SEQRES 3 B 264 LEU SER ILE PHE GLY HIS GLN MET ARG PHE ASN LEU GLN SEQRES 4 B 264 ASP GLY PHE PRO LEU VAL THR THR LYS ARG CYS HIS LEU SEQRES 5 B 264 ARG SER ILE ILE HIS GLN LEU LEU TRP PHE LEU GLN GLY SEQRES 6 B 264 ASP THR ASN ILE ALA TYR LEU HIS GLU ASN ASN VAL THR SEQRES 7 B 264 ILE TRP ASP GLU TRP ALA ASP GLU ASN GLY ASP LEU GLY SEQRES 8 B 264 PRO VAL TYR GLY LYS GLN TRP ARG ALA TRP PRO THR PRO SEQRES 9 B 264 ASP GLY ARG HIS ILE ASP GLN ILE THR THR VAL LEU ASN SEQRES 10 B 264 GLN LEU LYS ASN ASP PRO ASP SER ARG ARG ILE ILE VAL SEQRES 11 B 264 SER ALA TRP ASN VAL GLY GLU LEU ASP LYS MET ALA LEU SEQRES 12 B 264 ALA PRO CYS HIS ALA PHE PHE GLN PHE TYR VAL ALA ASP SEQRES 13 B 264 GLY LYS LEU SER CYS GLN LEU TYR GLN ARG SER CYS ASP SEQRES 14 B 264 VAL PHE LEU GLY LEU PRO PHE ASN ILE ALA SER TYR ALA SEQRES 15 B 264 LEU LEU VAL HIS MET MET ALA GLN GLN CYS ASP LEU GLU SEQRES 16 B 264 VAL GLY ASP PHE VAL TRP THR GLY GLY ASP THR HIS LEU SEQRES 17 B 264 TYR SER ASN HIS MET ASP GLN THR HIS LEU GLN LEU SER SEQRES 18 B 264 ARG GLU PRO ARG PRO LEU PRO LYS LEU ILE ILE LYS ARG SEQRES 19 B 264 LYS PRO GLU SER ILE PHE ASP TYR ARG PHE GLU ASP PHE SEQRES 20 B 264 GLU ILE GLU GLY TYR ASP PRO HIS PRO GLY ILE LYS ALA SEQRES 21 B 264 PRO VAL ALA ILE MODRES 1ZPR CXM A 1 MET N-CARBOXYMETHIONINE MODRES 1ZPR CXM B 1 MET N-CARBOXYMETHIONINE HET CXM A 1 11 HET CXM B 1 11 HET UMP A 301 20 HET CB3 A 300 35 HET UMP B 301 20 HET CB3 B 300 35 HETNAM CXM N-CARBOXYMETHIONINE HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETNAM CB3 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID HETSYN UMP DUMP FORMUL 1 CXM 2(C6 H11 N O4 S) FORMUL 3 UMP 2(C9 H13 N2 O8 P) FORMUL 4 CB3 2(C24 H23 N5 O6) FORMUL 7 HOH *178(H2 O) HELIX 1 1 LYS A 2 GLU A 14 1 13 HELIX 2 2 LEU A 38 ASP A 40 5 3 HELIX 3 3 LEU A 52 GLN A 64 1 13 HELIX 4 4 ILE A 69 ASN A 75 5 7 HELIX 5 5 ASP A 81 TRP A 83 5 3 HELIX 6 6 TYR A 94 ALA A 100 1 7 HELIX 7 7 GLN A 111 ASN A 121 1 11 HELIX 8 8 VAL A 135 LYS A 140 5 6 HELIX 9 9 GLY A 173 GLN A 191 1 19 HELIX 10 10 SER A 210 SER A 221 5 12 HELIX 11 11 ILE A 239 ASP A 241 5 3 HELIX 12 12 PHE A 244 ASP A 246 5 3 HELIX 13 13 LYS B 2 GLU B 14 1 13 HELIX 14 14 LEU B 52 LEU B 63 1 12 HELIX 15 15 ALA B 70 ASN B 75 1 6 HELIX 16 16 TYR B 94 ALA B 100 1 7 HELIX 17 17 GLN B 111 ASN B 121 1 11 HELIX 18 18 VAL B 135 LYS B 140 5 6 HELIX 19 19 GLY B 173 GLN B 191 1 19 HELIX 20 20 SER B 210 SER B 221 5 12 HELIX 21 21 ILE B 239 ASP B 241 5 3 HELIX 22 22 PHE B 244 ASP B 246 5 3 SHEET 1 A 4 THR A 16 LYS A 18 0 SHEET 2 A 4 THR A 26 PHE A 30 -1 N SER A 28 O THR A 16 SHEET 3 A 4 ASP A 205 TYR A 209 -1 N LEU A 208 O LEU A 27 SHEET 4 A 4 SER A 167 ASP A 169 1 N CYS A 168 O ASP A 205 SHEET 1 B 5 HIS A 32 ASN A 37 0 SHEET 2 B 5 ASP A 198 GLY A 203 -1 N GLY A 203 O HIS A 32 SHEET 3 B 5 LYS A 158 GLN A 165 1 N CYS A 161 O VAL A 200 SHEET 4 B 5 HIS A 147 ALA A 155 -1 N ALA A 155 O LYS A 158 SHEET 5 B 5 ILE A 129 SER A 131 -1 N VAL A 130 O PHE A 150 SHEET 1 C 2 LYS A 229 ILE A 232 0 SHEET 2 C 2 PHE A 247 GLU A 250 -1 N GLU A 250 O LYS A 229 SHEET 1 D 4 THR B 16 LYS B 18 0 SHEET 2 D 4 THR B 26 PHE B 30 -1 N SER B 28 O THR B 16 SHEET 3 D 4 ASP B 205 TYR B 209 -1 N LEU B 208 O LEU B 27 SHEET 4 D 4 SER B 167 ASP B 169 1 N CYS B 168 O ASP B 205 SHEET 1 E 5 HIS B 32 ASN B 37 0 SHEET 2 E 5 ASP B 198 GLY B 203 -1 N GLY B 203 O HIS B 32 SHEET 3 E 5 LYS B 158 GLN B 165 1 N CYS B 161 O VAL B 200 SHEET 4 E 5 HIS B 147 ALA B 155 -1 N ALA B 155 O LYS B 158 SHEET 5 E 5 ILE B 129 SER B 131 -1 N VAL B 130 O PHE B 150 SHEET 1 F 2 LYS B 229 ILE B 232 0 SHEET 2 F 2 PHE B 247 GLU B 250 -1 N GLU B 250 O LYS B 229 LINK C CXM A 1 N LYS A 2 1555 1555 1.33 LINK SG CYS A 146 C6 UMP A 301 1555 1555 1.82 LINK C CXM B 1 N LYS B 2 1555 1555 1.34 SITE 1 AC1 14 ARG A 21 CYS A 146 HIS A 147 GLN A 165 SITE 2 AC1 14 ARG A 166 SER A 167 ASP A 169 ASN A 177 SITE 3 AC1 14 HIS A 207 TYR A 209 CB3 A 300 HOH A 738 SITE 4 AC1 14 ARG B 126 ARG B 127 SITE 1 AC2 14 GLN A 58 ILE A 79 TRP A 83 LEU A 143 SITE 2 AC2 14 ASP A 169 LEU A 172 GLY A 173 PHE A 176 SITE 3 AC2 14 ASN A 177 TYR A 209 ALA A 263 UMP A 301 SITE 4 AC2 14 HOH A 864 HOH A 870 SITE 1 AC3 16 ARG A 126 ARG A 127 ARG B 21 CYS B 146 SITE 2 AC3 16 HIS B 147 GLN B 165 ARG B 166 SER B 167 SITE 3 AC3 16 CYS B 168 ASP B 169 ASN B 177 HIS B 207 SITE 4 AC3 16 TYR B 209 CB3 B 300 HOH B 736 HOH B 772 SITE 1 AC4 15 HIS B 51 ILE B 79 TRP B 80 TRP B 83 SITE 2 AC4 15 TYR B 94 LEU B 143 ALA B 144 PRO B 145 SITE 3 AC4 15 CYS B 146 HIS B 147 ARG B 166 LEU B 172 SITE 4 AC4 15 ILE B 258 UMP B 301 HOH B 752 CRYST1 127.221 127.221 68.178 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007860 0.004538 0.000000 0.00000 SCALE2 0.000000 0.009076 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014667 0.00000 HETATM 1 N CXM A 1 22.227 20.431 49.866 1.00 15.48 N HETATM 2 CA CXM A 1 23.639 20.789 49.890 1.00 16.21 C HETATM 3 CB CXM A 1 24.356 20.442 48.564 1.00 15.75 C HETATM 4 CG CXM A 1 24.589 18.957 48.310 1.00 14.78 C HETATM 5 SD CXM A 1 25.569 18.625 46.825 1.00 14.73 S HETATM 6 CE CXM A 1 24.280 18.780 45.650 1.00 12.22 C HETATM 7 C CXM A 1 23.664 22.287 50.073 1.00 12.99 C HETATM 8 O CXM A 1 22.805 22.937 49.469 1.00 23.12 O HETATM 9 CN CXM A 1 21.802 19.198 50.119 1.00 18.11 C HETATM 10 ON1 CXM A 1 20.762 19.068 49.469 1.00 16.11 O HETATM 11 ON2 CXM A 1 22.293 18.254 50.735 1.00 14.99 O