data_1ZPX # _entry.id 1ZPX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ZPX pdb_00001zpx 10.2210/pdb1zpx/pdb RCSB RCSB033004 ? ? WWPDB D_1000033004 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-15 2 'Structure model' 1 1 2008-04-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' pdbx_entry_details 10 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ZPX _pdbx_database_status.recvd_initial_deposition_date 2005-05-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1SOP 'C-terminal cysteine-rich domain' unspecified PDB 1SP7 'C-terminal cysteine-rich domain' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Milbradt, A.G.' 1 'Boulegue, C.' 2 'Moroder, L.' 3 'Renner, C.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;The Two Cysteine-rich Head Domains of Minicollagen from Hydra Nematocysts Differ in their Cystine Framework and Overall Fold Despite an Identical Cysteine Sequence Pattern. ; J.Mol.Biol. 354 591 600 2005 JMOBAK UK 0022-2836 0070 ? 16257007 10.1016/j.jmb.2005.09.080 1 ;The structure of the Cys-rich terminal domain of Hydra minicollagen, which is involved in disulfide networks of the nematocyst wall. ; J.Biol.Chem. 279 30395 30401 2004 JBCHA3 US 0021-9258 0071 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Milbradt, A.G.' 1 ? primary 'Boulegue, C.' 2 ? primary 'Moroder, L.' 3 ? primary 'Renner, C.' 4 ? 1 'Pokidysheva, E.' 5 ? 1 'Milbradt, A.G.' 6 ? 1 'Meier, S.' 7 ? 1 'Renner, C.' 8 ? 1 'Haussinger, D.' 9 ? 1 'Bachinger, H.P.' 10 ? 1 'Moroder, L.' 11 ? 1 'Grzesiek, S.' 12 ? 1 'Holstein, T.W.' 13 ? 1 'Ozbek, S.' 14 ? 1 'Engel, J.' 15 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description mini-collagen _entity.formula_weight 2115.541 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)PCGSYCPSVCAPACAPVCCYP(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XPCGSYCPSVCAPACAPVCCYPX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 PRO n 1 3 CYS n 1 4 GLY n 1 5 SER n 1 6 TYR n 1 7 CYS n 1 8 PRO n 1 9 SER n 1 10 VAL n 1 11 CYS n 1 12 ALA n 1 13 PRO n 1 14 ALA n 1 15 CYS n 1 16 ALA n 1 17 PRO n 1 18 VAL n 1 19 CYS n 1 20 CYS n 1 21 TYR n 1 22 PRO n 1 23 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence occurs naturally in Hydra sp.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 12 12 ACE ACE A . n A 1 2 PRO 2 13 13 PRO PRO A . n A 1 3 CYS 3 14 14 CYS CYS A . n A 1 4 GLY 4 15 15 GLY GLY A . n A 1 5 SER 5 16 16 SER SER A . n A 1 6 TYR 6 17 17 TYR TYR A . n A 1 7 CYS 7 18 18 CYS CYS A . n A 1 8 PRO 8 19 19 PRO PRO A . n A 1 9 SER 9 20 20 SER SER A . n A 1 10 VAL 10 21 21 VAL VAL A . n A 1 11 CYS 11 22 22 CYS CYS A . n A 1 12 ALA 12 23 23 ALA ALA A . n A 1 13 PRO 13 24 24 PRO PRO A . n A 1 14 ALA 14 25 25 ALA ALA A . n A 1 15 CYS 15 26 26 CYS CYS A . n A 1 16 ALA 16 27 27 ALA ALA A . n A 1 17 PRO 17 28 28 PRO PRO A . n A 1 18 VAL 18 29 29 VAL VAL A . n A 1 19 CYS 19 30 30 CYS CYS A . n A 1 20 CYS 20 31 31 CYS CYS A . n A 1 21 TYR 21 32 32 TYR TYR A . n A 1 22 PRO 22 33 33 PRO PRO A . n A 1 23 NH2 23 34 34 NH2 NH2 A . n # _cell.entry_id 1ZPX _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZPX _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1ZPX _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1ZPX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1ZPX _struct.title 'NMR Structure of Mcol1-[13-33] from Hydra' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ZPX _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text 'cysteine-rich peptide, STRUCTURAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q00484_9CNID _struct_ref.pdbx_db_accession Q00484 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code PCGSYCPSVCAPACAPVCCYP _struct_ref.pdbx_align_begin 32 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1ZPX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q00484 _struct_ref_seq.db_align_beg 32 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 52 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 13 _struct_ref_seq.pdbx_auth_seq_align_end 33 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ALA _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 16 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id TYR _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 21 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ALA _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 27 _struct_conf.end_auth_comp_id TYR _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 32 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 15 SG ? ? A CYS 14 A CYS 26 1_555 ? ? ? ? ? ? ? 1.976 ? ? disulf2 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 20 SG ? ? A CYS 18 A CYS 31 1_555 ? ? ? ? ? ? ? 1.977 ? ? disulf3 disulf ? ? A CYS 11 SG ? ? ? 1_555 A CYS 19 SG ? ? A CYS 22 A CYS 30 1_555 ? ? ? ? ? ? ? 1.991 ? ? covale1 covale both ? A ACE 1 C ? ? ? 1_555 A PRO 2 N ? ? A ACE 12 A PRO 13 1_555 ? ? ? ? ? ? ? 1.365 ? ? covale2 covale both ? A PRO 22 C ? ? ? 1_555 A NH2 23 N ? ? A PRO 33 A NH2 34 1_555 ? ? ? ? ? ? ? 1.327 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 ACE A 1 ? PRO A 2 ? ACE A 12 ? 1_555 PRO A 13 ? 1_555 . . PRO 13 ACE None 'Terminal acetylation' 2 NH2 A 23 ? PRO A 22 ? NH2 A 34 ? 1_555 PRO A 33 ? 1_555 . . PRO 13 NH2 None 'Terminal amidation' 3 CYS A 3 ? CYS A 15 ? CYS A 14 ? 1_555 CYS A 26 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 7 ? CYS A 20 ? CYS A 18 ? 1_555 CYS A 31 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS A 11 ? CYS A 19 ? CYS A 22 ? 1_555 CYS A 30 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 12 A . ? ALA 23 A PRO 13 A ? PRO 24 A 1 10.62 2 ALA 12 A . ? ALA 23 A PRO 13 A ? PRO 24 A 2 9.51 3 ALA 12 A . ? ALA 23 A PRO 13 A ? PRO 24 A 3 7.18 4 ALA 12 A . ? ALA 23 A PRO 13 A ? PRO 24 A 4 8.12 5 ALA 12 A . ? ALA 23 A PRO 13 A ? PRO 24 A 5 11.62 6 ALA 12 A . ? ALA 23 A PRO 13 A ? PRO 24 A 6 6.15 7 CYS 20 A . ? CYS 31 A TYR 21 A ? TYR 32 A 6 11.58 8 ALA 12 A . ? ALA 23 A PRO 13 A ? PRO 24 A 7 7.58 9 ALA 12 A . ? ALA 23 A PRO 13 A ? PRO 24 A 8 3.73 10 ALA 12 A . ? ALA 23 A PRO 13 A ? PRO 24 A 9 8.96 11 ALA 12 A . ? ALA 23 A PRO 13 A ? PRO 24 A 10 7.68 # _struct_site.id AC2 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NH2 _struct_site.pdbx_auth_seq_id 34 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE NH2 A 34' # _struct_site_gen.id 1 _struct_site_gen.site_id AC2 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id PRO _struct_site_gen.label_asym_id A _struct_site_gen.label_seq_id 22 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id PRO _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 33 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _pdbx_entry_details.entry_id 1ZPX _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 5 CB A CYS 26 ? ? CA A CYS 26 ? ? C A CYS 26 ? ? 120.47 111.50 8.97 1.20 N 2 7 N A ALA 23 ? ? CA A ALA 23 ? ? CB A ALA 23 ? ? 100.90 110.10 -9.20 1.40 N 3 10 N A ALA 23 ? ? CA A ALA 23 ? ? CB A ALA 23 ? ? 101.55 110.10 -8.55 1.40 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 16 ? ? -134.47 -33.72 2 1 PRO A 19 ? ? -56.91 108.34 3 2 SER A 16 ? ? -139.08 -34.17 4 2 SER A 20 ? ? -79.13 20.57 5 2 PRO A 28 ? ? -45.89 -16.79 6 3 PRO A 19 ? ? -51.62 102.80 7 3 CYS A 22 ? ? -68.07 4.69 8 3 PRO A 28 ? ? -45.68 -13.69 9 4 PRO A 19 ? ? -52.39 108.79 10 5 PRO A 19 ? ? -57.90 88.99 11 5 SER A 20 ? ? -85.45 32.59 12 5 CYS A 22 ? ? -68.30 8.22 13 5 ALA A 23 ? ? -44.44 156.57 14 5 PRO A 28 ? ? -48.49 -12.54 15 6 SER A 16 ? ? -162.43 -50.07 16 6 PRO A 19 ? ? -53.34 100.75 17 6 CYS A 22 ? ? -79.46 25.04 18 6 PRO A 28 ? ? -36.72 -31.86 19 7 PRO A 19 ? ? -55.35 93.75 20 7 SER A 20 ? ? -94.10 35.25 21 7 CYS A 22 ? ? -69.33 14.13 22 7 ALA A 23 ? ? -41.18 165.85 23 7 PRO A 28 ? ? -61.69 2.89 24 8 PRO A 19 ? ? -51.81 107.58 25 8 SER A 20 ? ? -90.97 36.72 26 8 CYS A 26 ? ? 27.24 36.74 27 8 PRO A 28 ? ? -45.66 -19.03 28 9 CYS A 14 ? ? -134.67 -71.36 29 9 SER A 16 ? ? -160.07 90.44 30 9 TYR A 17 ? ? 55.01 11.69 31 9 PRO A 19 ? ? -55.15 99.91 32 9 CYS A 22 ? ? -108.37 58.00 33 10 PRO A 19 ? ? -54.84 99.00 34 10 ALA A 23 ? ? -47.58 165.75 35 10 PRO A 28 ? ? -46.55 -14.22 36 10 TYR A 32 ? ? 51.41 73.38 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 SER A 20 ? ? VAL A 21 ? ? 148.58 2 1 CYS A 26 ? ? ALA A 27 ? ? -148.64 3 2 CYS A 18 ? ? PRO A 19 ? ? 144.41 4 2 CYS A 26 ? ? ALA A 27 ? ? -146.65 5 3 CYS A 18 ? ? PRO A 19 ? ? 148.27 6 3 SER A 20 ? ? VAL A 21 ? ? 148.66 7 3 CYS A 26 ? ? ALA A 27 ? ? -146.20 8 4 CYS A 18 ? ? PRO A 19 ? ? 148.07 9 4 CYS A 26 ? ? ALA A 27 ? ? -144.59 10 5 CYS A 18 ? ? PRO A 19 ? ? 148.63 11 5 SER A 20 ? ? VAL A 21 ? ? 148.16 12 6 CYS A 18 ? ? PRO A 19 ? ? 148.57 13 6 SER A 20 ? ? VAL A 21 ? ? 144.48 14 6 CYS A 26 ? ? ALA A 27 ? ? -149.75 15 7 CYS A 18 ? ? PRO A 19 ? ? 148.68 16 7 SER A 20 ? ? VAL A 21 ? ? 142.20 17 8 ALA A 25 ? ? CYS A 26 ? ? 71.01 18 9 CYS A 18 ? ? PRO A 19 ? ? 142.36 19 9 CYS A 22 ? ? ALA A 23 ? ? 145.75 20 9 CYS A 26 ? ? ALA A 27 ? ? -146.10 21 10 CYS A 18 ? ? PRO A 19 ? ? 149.43 22 10 SER A 20 ? ? VAL A 21 ? ? 147.28 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 9 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 17 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.115 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 1ZPX _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '2 mM Minicollagen [13-33] pH 3.8' '90% H2O/10% D2O' 2 '2 mM Minicollagen [13-33]' '100% D2O' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 283 ambient 3.8 ? . K 2 293 ambient 3.8 ? . K 3 303 ambient 3.8 ? . K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 '2D TOCSY' 1 3 1 DQF-COSY 1 4 1 '2D NOESY' 2 5 1 '2D TOCSY' 2 6 1 DQF-COSY 2 7 2 '2D TOCSY' 1 8 3 '2D TOCSY' 1 # _pdbx_nmr_details.entry_id 1ZPX _pdbx_nmr_details.text 'This structure was determined using standard 2D homonuclear techniques.' # _pdbx_nmr_refine.entry_id 1ZPX _pdbx_nmr_refine.method ;distance geometry simulated annealing ; _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3 Bruker 1 'structure solution' DGII 98.0 Accelrys 2 'structure solution' Discover 2.98 Accelrys 3 refinement Discover 2.98 Accelrys 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 CYS N N N N 21 CYS CA C N R 22 CYS C C N N 23 CYS O O N N 24 CYS CB C N N 25 CYS SG S N N 26 CYS OXT O N N 27 CYS H H N N 28 CYS H2 H N N 29 CYS HA H N N 30 CYS HB2 H N N 31 CYS HB3 H N N 32 CYS HG H N N 33 CYS HXT H N N 34 GLY N N N N 35 GLY CA C N N 36 GLY C C N N 37 GLY O O N N 38 GLY OXT O N N 39 GLY H H N N 40 GLY H2 H N N 41 GLY HA2 H N N 42 GLY HA3 H N N 43 GLY HXT H N N 44 NH2 N N N N 45 NH2 HN1 H N N 46 NH2 HN2 H N N 47 PRO N N N N 48 PRO CA C N S 49 PRO C C N N 50 PRO O O N N 51 PRO CB C N N 52 PRO CG C N N 53 PRO CD C N N 54 PRO OXT O N N 55 PRO H H N N 56 PRO HA H N N 57 PRO HB2 H N N 58 PRO HB3 H N N 59 PRO HG2 H N N 60 PRO HG3 H N N 61 PRO HD2 H N N 62 PRO HD3 H N N 63 PRO HXT H N N 64 SER N N N N 65 SER CA C N S 66 SER C C N N 67 SER O O N N 68 SER CB C N N 69 SER OG O N N 70 SER OXT O N N 71 SER H H N N 72 SER H2 H N N 73 SER HA H N N 74 SER HB2 H N N 75 SER HB3 H N N 76 SER HG H N N 77 SER HXT H N N 78 TYR N N N N 79 TYR CA C N S 80 TYR C C N N 81 TYR O O N N 82 TYR CB C N N 83 TYR CG C Y N 84 TYR CD1 C Y N 85 TYR CD2 C Y N 86 TYR CE1 C Y N 87 TYR CE2 C Y N 88 TYR CZ C Y N 89 TYR OH O N N 90 TYR OXT O N N 91 TYR H H N N 92 TYR H2 H N N 93 TYR HA H N N 94 TYR HB2 H N N 95 TYR HB3 H N N 96 TYR HD1 H N N 97 TYR HD2 H N N 98 TYR HE1 H N N 99 TYR HE2 H N N 100 TYR HH H N N 101 TYR HXT H N N 102 VAL N N N N 103 VAL CA C N S 104 VAL C C N N 105 VAL O O N N 106 VAL CB C N N 107 VAL CG1 C N N 108 VAL CG2 C N N 109 VAL OXT O N N 110 VAL H H N N 111 VAL H2 H N N 112 VAL HA H N N 113 VAL HB H N N 114 VAL HG11 H N N 115 VAL HG12 H N N 116 VAL HG13 H N N 117 VAL HG21 H N N 118 VAL HG22 H N N 119 VAL HG23 H N N 120 VAL HXT H N N 121 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 CYS N CA sing N N 19 CYS N H sing N N 20 CYS N H2 sing N N 21 CYS CA C sing N N 22 CYS CA CB sing N N 23 CYS CA HA sing N N 24 CYS C O doub N N 25 CYS C OXT sing N N 26 CYS CB SG sing N N 27 CYS CB HB2 sing N N 28 CYS CB HB3 sing N N 29 CYS SG HG sing N N 30 CYS OXT HXT sing N N 31 GLY N CA sing N N 32 GLY N H sing N N 33 GLY N H2 sing N N 34 GLY CA C sing N N 35 GLY CA HA2 sing N N 36 GLY CA HA3 sing N N 37 GLY C O doub N N 38 GLY C OXT sing N N 39 GLY OXT HXT sing N N 40 NH2 N HN1 sing N N 41 NH2 N HN2 sing N N 42 PRO N CA sing N N 43 PRO N CD sing N N 44 PRO N H sing N N 45 PRO CA C sing N N 46 PRO CA CB sing N N 47 PRO CA HA sing N N 48 PRO C O doub N N 49 PRO C OXT sing N N 50 PRO CB CG sing N N 51 PRO CB HB2 sing N N 52 PRO CB HB3 sing N N 53 PRO CG CD sing N N 54 PRO CG HG2 sing N N 55 PRO CG HG3 sing N N 56 PRO CD HD2 sing N N 57 PRO CD HD3 sing N N 58 PRO OXT HXT sing N N 59 SER N CA sing N N 60 SER N H sing N N 61 SER N H2 sing N N 62 SER CA C sing N N 63 SER CA CB sing N N 64 SER CA HA sing N N 65 SER C O doub N N 66 SER C OXT sing N N 67 SER CB OG sing N N 68 SER CB HB2 sing N N 69 SER CB HB3 sing N N 70 SER OG HG sing N N 71 SER OXT HXT sing N N 72 TYR N CA sing N N 73 TYR N H sing N N 74 TYR N H2 sing N N 75 TYR CA C sing N N 76 TYR CA CB sing N N 77 TYR CA HA sing N N 78 TYR C O doub N N 79 TYR C OXT sing N N 80 TYR CB CG sing N N 81 TYR CB HB2 sing N N 82 TYR CB HB3 sing N N 83 TYR CG CD1 doub Y N 84 TYR CG CD2 sing Y N 85 TYR CD1 CE1 sing Y N 86 TYR CD1 HD1 sing N N 87 TYR CD2 CE2 doub Y N 88 TYR CD2 HD2 sing N N 89 TYR CE1 CZ doub Y N 90 TYR CE1 HE1 sing N N 91 TYR CE2 CZ sing Y N 92 TYR CE2 HE2 sing N N 93 TYR CZ OH sing N N 94 TYR OH HH sing N N 95 TYR OXT HXT sing N N 96 VAL N CA sing N N 97 VAL N H sing N N 98 VAL N H2 sing N N 99 VAL CA C sing N N 100 VAL CA CB sing N N 101 VAL CA HA sing N N 102 VAL C O doub N N 103 VAL C OXT sing N N 104 VAL CB CG1 sing N N 105 VAL CB CG2 sing N N 106 VAL CB HB sing N N 107 VAL CG1 HG11 sing N N 108 VAL CG1 HG12 sing N N 109 VAL CG1 HG13 sing N N 110 VAL CG2 HG21 sing N N 111 VAL CG2 HG22 sing N N 112 VAL CG2 HG23 sing N N 113 VAL OXT HXT sing N N 114 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DRX Bruker 500 ? 2 DMX Bruker 750 ? # _atom_sites.entry_id 1ZPX _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_