HEADER OXIDOREDUCTASE 25-MAY-05 1ZSY TITLE THE STRUCTURE OF HUMAN MITOCHONDRIAL 2-ENOYL THIOESTER REDUCTASE (CGI- TITLE 2 63) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL 2-ENOYL THIOESTER REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRANS-2-ENOYL-COA REDUCTASE, HSNRBF-1, NRBF-1, CGI-63, COMPND 5 NUCLEAR RECEPTOR-BINDING FACTOR 1; COMPND 6 EC: 1.3.1.38; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: HOMOLOG OF YEAST 2-ENOYL THIOESTER REDUCTASE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MECR, NBRF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS MEDIUM-CHAIN DEHYDROGENASE/REDUCTASE, OXIDOREDUCTASE, 2-ENOYL KEYWDS 2 THIOESTER REDUCTASE, FATTY ACID SYNTHESIS (TYPE 2), STRUCTURAL KEYWDS 3 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR P.LUKACIK,N.SHAFQAT,K.L.KAVANAGH,C.JOHANSSON,C.SMEE,A.EDWARDS, AUTHOR 2 C.ARROWSMITH,M.SUNDSTROM,F.VON DELFT,U.OPPERMANN,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 4 23-AUG-23 1ZSY 1 REMARK SEQADV REVDAT 3 13-JUL-11 1ZSY 1 VERSN REVDAT 2 24-FEB-09 1ZSY 1 VERSN REVDAT 1 07-JUN-05 1ZSY 0 JRNL AUTH P.LUKACIK,N.SHAFQAT,K.L.KAVANAGH,C.JOHANSSON,C.SMEE, JRNL AUTH 2 A.EDWARDS,C.ARROWSMITH,M.SUNDSTROM,F.VON DELFT,U.OPPERMANN JRNL TITL THE STRUCTURE OF HUMAN MITOCHONDRIAL 2-ENOYL THIOESTER JRNL TITL 2 REDUCTASE (CGI-63) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 52854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2813 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3891 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 229 REMARK 3 BIN FREE R VALUE : 0.2210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2604 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 345 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.02000 REMARK 3 B22 (A**2) : 0.69000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.174 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2766 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3775 ; 1.419 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 375 ; 5.533 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;38.869 ;24.434 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 468 ;13.138 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.592 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 438 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2077 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1302 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1934 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 288 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.164 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.148 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1831 ; 1.888 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2896 ; 2.924 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1032 ; 5.150 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 869 ; 7.559 ;12.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 357 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7400 18.9740 19.1270 REMARK 3 T TENSOR REMARK 3 T11: -0.0346 T22: -0.0641 REMARK 3 T33: -0.0416 T12: -0.0024 REMARK 3 T13: -0.0048 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.6535 L22: 0.3879 REMARK 3 L33: 0.6189 L12: 0.1537 REMARK 3 L13: 0.5231 L23: 0.0901 REMARK 3 S TENSOR REMARK 3 S11: 0.0303 S12: 0.0820 S13: -0.1117 REMARK 3 S21: 0.0182 S22: 0.0328 S23: -0.0562 REMARK 3 S31: 0.0204 S32: 0.0232 S33: -0.0631 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZSY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000033081. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.984 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55668 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 44.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : 0.11300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : 0.43500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1GU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULPHATE, 0.16M SODIUM REMARK 280 CHLORIDE, 0.08M SODIUM CACODYLATE , PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.09500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.59200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.68600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.09500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.59200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.68600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.09500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.59200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.68600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.09500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.59200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.68600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 801 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 GLU A 230 CD OE1 OE2 REMARK 470 LYS A 232 CG CD CE NZ REMARK 470 ASN A 233 CG OD1 ND2 REMARK 470 LYS A 236 CE NZ REMARK 470 LYS A 251 CD CE NZ REMARK 470 MET A 272 SD CE REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 LYS A 287 CE NZ REMARK 470 GLU A 310 CD OE1 OE2 REMARK 470 GLU A 342 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 321 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 18 47.05 -87.61 REMARK 500 SER A 22 37.55 -142.79 REMARK 500 ASN A 77 69.22 -115.62 REMARK 500 VAL A 150 -74.12 -117.53 REMARK 500 ASP A 204 63.84 61.45 REMARK 500 ASP A 237 -4.05 76.00 REMARK 500 CYS A 247 27.11 -147.19 REMARK 500 CYS A 247 12.04 -140.01 REMARK 500 LYS A 274 -3.35 86.13 REMARK 500 GLN A 275 76.55 -116.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 DBREF 1ZSY A 24 357 UNP Q9BV79 MECR_HUMAN 40 373 SEQADV 1ZSY MET A 1 UNP Q9BV79 CLONING ARTIFACT SEQADV 1ZSY HIS A 2 UNP Q9BV79 EXPRESSION TAG SEQADV 1ZSY HIS A 3 UNP Q9BV79 EXPRESSION TAG SEQADV 1ZSY HIS A 4 UNP Q9BV79 EXPRESSION TAG SEQADV 1ZSY HIS A 5 UNP Q9BV79 EXPRESSION TAG SEQADV 1ZSY HIS A 6 UNP Q9BV79 EXPRESSION TAG SEQADV 1ZSY HIS A 7 UNP Q9BV79 EXPRESSION TAG SEQADV 1ZSY SER A 8 UNP Q9BV79 CLONING ARTIFACT SEQADV 1ZSY SER A 9 UNP Q9BV79 CLONING ARTIFACT SEQADV 1ZSY GLY A 10 UNP Q9BV79 CLONING ARTIFACT SEQADV 1ZSY VAL A 11 UNP Q9BV79 CLONING ARTIFACT SEQADV 1ZSY ASP A 12 UNP Q9BV79 CLONING ARTIFACT SEQADV 1ZSY LEU A 13 UNP Q9BV79 CLONING ARTIFACT SEQADV 1ZSY GLY A 14 UNP Q9BV79 CLONING ARTIFACT SEQADV 1ZSY THR A 15 UNP Q9BV79 CLONING ARTIFACT SEQADV 1ZSY GLU A 16 UNP Q9BV79 CLONING ARTIFACT SEQADV 1ZSY ASN A 17 UNP Q9BV79 CLONING ARTIFACT SEQADV 1ZSY LEU A 18 UNP Q9BV79 CLONING ARTIFACT SEQADV 1ZSY TYR A 19 UNP Q9BV79 CLONING ARTIFACT SEQADV 1ZSY PHE A 20 UNP Q9BV79 CLONING ARTIFACT SEQADV 1ZSY GLN A 21 UNP Q9BV79 CLONING ARTIFACT SEQADV 1ZSY SER A 22 UNP Q9BV79 CLONING ARTIFACT SEQADV 1ZSY MET A 23 UNP Q9BV79 CLONING ARTIFACT SEQRES 1 A 357 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 357 GLY THR GLU ASN LEU TYR PHE GLN SER MET PRO ALA ARG SEQRES 3 A 357 VAL ARG ALA LEU VAL TYR GLY HIS HIS GLY ASP PRO ALA SEQRES 4 A 357 LYS VAL VAL GLU LEU LYS ASN LEU GLU LEU ALA ALA VAL SEQRES 5 A 357 ARG GLY SER ASP VAL ARG VAL LYS MET LEU ALA ALA PRO SEQRES 6 A 357 ILE ASN PRO SER ASP ILE ASN MET ILE GLN GLY ASN TYR SEQRES 7 A 357 GLY LEU LEU PRO GLU LEU PRO ALA VAL GLY GLY ASN GLU SEQRES 8 A 357 GLY VAL ALA GLN VAL VAL ALA VAL GLY SER ASN VAL THR SEQRES 9 A 357 GLY LEU LYS PRO GLY ASP TRP VAL ILE PRO ALA ASN ALA SEQRES 10 A 357 GLY LEU GLY THR TRP ARG THR GLU ALA VAL PHE SER GLU SEQRES 11 A 357 GLU ALA LEU ILE GLN VAL PRO SER ASP ILE PRO LEU GLN SEQRES 12 A 357 SER ALA ALA THR LEU GLY VAL ASN PRO CYS THR ALA TYR SEQRES 13 A 357 ARG MET LEU MET ASP PHE GLU GLN LEU GLN PRO GLY ASP SEQRES 14 A 357 SER VAL ILE GLN ASN ALA SER ASN SER GLY VAL GLY GLN SEQRES 15 A 357 ALA VAL ILE GLN ILE ALA ALA ALA LEU GLY LEU ARG THR SEQRES 16 A 357 ILE ASN VAL VAL ARG ASP ARG PRO ASP ILE GLN LYS LEU SEQRES 17 A 357 SER ASP ARG LEU LYS SER LEU GLY ALA GLU HIS VAL ILE SEQRES 18 A 357 THR GLU GLU GLU LEU ARG ARG PRO GLU MET LYS ASN PHE SEQRES 19 A 357 PHE LYS ASP MET PRO GLN PRO ARG LEU ALA LEU ASN CYS SEQRES 20 A 357 VAL GLY GLY LYS SER SER THR GLU LEU LEU ARG GLN LEU SEQRES 21 A 357 ALA ARG GLY GLY THR MET VAL THR TYR GLY GLY MET ALA SEQRES 22 A 357 LYS GLN PRO VAL VAL ALA SER VAL SER LEU LEU ILE PHE SEQRES 23 A 357 LYS ASP LEU LYS LEU ARG GLY PHE TRP LEU SER GLN TRP SEQRES 24 A 357 LYS LYS ASP HIS SER PRO ASP GLN PHE LYS GLU LEU ILE SEQRES 25 A 357 LEU THR LEU CYS ASP LEU ILE ARG ARG GLY GLN LEU THR SEQRES 26 A 357 ALA PRO ALA CYS SER GLN VAL PRO LEU GLN ASP TYR GLN SEQRES 27 A 357 SER ALA LEU GLU ALA SER MET LYS PRO PHE ILE SER SER SEQRES 28 A 357 LYS GLN ILE LEU THR MET HET SO4 A 500 5 HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 O4 S 2- FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *345(H2 O) HELIX 1 1 ASP A 37 VAL A 41 1 5 HELIX 2 2 ASN A 67 GLY A 76 1 10 HELIX 3 3 PRO A 141 LEU A 148 1 8 HELIX 4 4 VAL A 150 PHE A 162 1 13 HELIX 5 5 SER A 178 GLY A 192 1 15 HELIX 6 6 ASP A 204 LEU A 215 1 12 HELIX 7 7 GLU A 223 ARG A 228 1 6 HELIX 8 8 PRO A 229 PHE A 234 5 6 HELIX 9 9 GLY A 249 ARG A 258 1 10 HELIX 10 10 SER A 280 LYS A 287 1 8 HELIX 11 11 TRP A 295 HIS A 303 1 9 HELIX 12 12 SER A 304 ARG A 321 1 18 HELIX 13 13 ASP A 336 MET A 345 1 10 SHEET 1 A 3 VAL A 42 LEU A 47 0 SHEET 2 A 3 VAL A 27 TYR A 32 -1 N ALA A 29 O LYS A 45 SHEET 3 A 3 ALA A 86 VAL A 87 -1 O ALA A 86 N TYR A 32 SHEET 1 B 5 GLU A 125 SER A 129 0 SHEET 2 B 5 ASP A 56 PRO A 65 -1 N VAL A 59 O ALA A 126 SHEET 3 B 5 VAL A 93 VAL A 99 -1 O VAL A 97 N ARG A 58 SHEET 4 B 5 TRP A 111 PRO A 114 -1 O VAL A 112 N ALA A 94 SHEET 5 B 5 LEU A 133 VAL A 136 -1 O ILE A 134 N ILE A 113 SHEET 1 C 4 GLU A 125 SER A 129 0 SHEET 2 C 4 ASP A 56 PRO A 65 -1 N VAL A 59 O ALA A 126 SHEET 3 C 4 LYS A 352 THR A 356 -1 O LEU A 355 N ALA A 64 SHEET 4 C 4 CYS A 329 PRO A 333 1 N SER A 330 O LYS A 352 SHEET 1 D 6 HIS A 219 THR A 222 0 SHEET 2 D 6 ARG A 194 VAL A 199 1 N ASN A 197 O HIS A 219 SHEET 3 D 6 SER A 170 GLN A 173 1 N GLN A 173 O VAL A 198 SHEET 4 D 6 LEU A 243 ASN A 246 1 O LEU A 245 N ILE A 172 SHEET 5 D 6 THR A 265 THR A 268 1 O VAL A 267 N ASN A 246 SHEET 6 D 6 LYS A 290 GLY A 293 1 O LYS A 290 N MET A 266 CISPEP 1 LEU A 84 PRO A 85 0 -0.62 SITE 1 AC1 9 ALA A 175 SER A 176 ASN A 177 SER A 178 SITE 2 AC1 9 VAL A 199 ARG A 200 ARG A 202 HOH A 581 SITE 3 AC1 9 HOH A 724 SITE 1 AC2 9 PRO A 68 ASN A 151 SER A 178 GLY A 179 SITE 2 AC2 9 VAL A 180 LYS A 352 HOH A 548 HOH A 564 SITE 3 AC2 9 HOH A 772 SITE 1 AC3 7 ASN A 17 GLN A 166 PRO A 167 GLY A 168 SITE 2 AC3 7 ASP A 169 HOH A 640 HOH A 757 SITE 1 AC4 2 HIS A 34 HIS A 35 CRYST1 74.190 117.184 127.372 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013479 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008534 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007851 0.00000