HEADER TRANSFERASE/BIOSYNTHETIC PROTEIN 30-MAY-05 1ZUD TITLE STRUCTURE OF THIS-THIF PROTEIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLYLTRANSFERASE THIF; COMPND 3 CHAIN: 1, 3; COMPND 4 EC: 2.7.7.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: THIS PROTEIN; COMPND 8 CHAIN: 2, 4; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 83333; SOURCE 12 STRAIN: K12; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS THIAMIN, THIAZOLE, PROTEIN-PROTEIN COMPLEX, THIS, THIF, TRANSFERASE- KEYWDS 2 BIOSYNTHETIC PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.E.EALICK,C.LEHMANN REVDAT 4 23-AUG-23 1ZUD 1 REMARK LINK REVDAT 3 13-JUL-11 1ZUD 1 VERSN REVDAT 2 24-FEB-09 1ZUD 1 VERSN REVDAT 1 31-JAN-06 1ZUD 0 JRNL AUTH C.LEHMANN,T.P.BEGLEY,S.E.EALICK JRNL TITL STRUCTURE OF THE ESCHERICHIA COLI THIS-THIF COMPLEX, A KEY JRNL TITL 2 COMPONENT OF THE SULFUR TRANSFER SYSTEM IN THIAMIN JRNL TITL 3 BIOSYNTHESIS. JRNL REF BIOCHEMISTRY V. 45 11 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16388576 JRNL DOI 10.1021/BI051502Y REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 41515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2080 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4609 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 222 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4570 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.92000 REMARK 3 B22 (A**2) : 12.04000 REMARK 3 B33 (A**2) : -7.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.07 REMARK 3 LOW RESOLUTION CUTOFF (A) : 25.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.11 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.41 REMARK 3 BSOL : 72.97 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZUD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000033129. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 8-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42351 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 27.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1JW9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35 MM CACL2, 100 MM TRIS, 7% PEG400, REMARK 280 PH 7.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.75250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.07650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.58550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.07650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.75250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.58550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1, 2, 3, 4 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: 3, 4 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1, 2 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP 1 176 REMARK 465 ASN 1 177 REMARK 465 GLN 1 178 REMARK 465 GLU 1 179 REMARK 465 PRO 1 180 REMARK 465 GLU 1 181 REMARK 465 ARG 1 182 REMARK 465 ASN 1 183 REMARK 465 CYS 1 184 REMARK 465 ARG 1 185 REMARK 465 THR 1 186 REMARK 465 SER 1 246 REMARK 465 ASN 1 247 REMARK 465 ALA 1 248 REMARK 465 ASP 1 249 REMARK 465 PRO 1 250 REMARK 465 VAL 1 251 REMARK 465 MET 2 1 REMARK 465 GLU 3 181 REMARK 465 ARG 3 182 REMARK 465 ASN 3 183 REMARK 465 CYS 3 184 REMARK 465 ARG 3 185 REMARK 465 SER 3 246 REMARK 465 ASN 3 247 REMARK 465 ALA 3 248 REMARK 465 ASP 3 249 REMARK 465 PRO 3 250 REMARK 465 VAL 3 251 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OXT GLY 4 66 O HOH 4 115 1.99 REMARK 500 O HOH 4 91 O HOH 4 115 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG 4 43 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA 1 19 -161.73 57.46 REMARK 500 LEU 1 36 57.32 -114.85 REMARK 500 ARG 1 70 -11.31 -145.95 REMARK 500 ASP 1 80 4.80 80.97 REMARK 500 CYS 2 12 -97.59 -124.27 REMARK 500 ALA 2 13 119.53 162.09 REMARK 500 ALA 3 19 -164.27 58.27 REMARK 500 LEU 3 36 55.06 -113.93 REMARK 500 ARG 3 70 -12.63 -141.29 REMARK 500 ASP 3 80 -3.82 80.82 REMARK 500 ASP 4 7 -1.95 65.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA 3 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU 1 14 O REMARK 620 2 ASP 1 16 OD2 105.7 REMARK 620 3 HOH 1 704 O 79.4 87.0 REMARK 620 4 LEU 3 14 O 153.4 94.7 85.0 REMARK 620 5 ASP 3 16 OD2 96.1 80.3 164.9 104.0 REMARK 620 6 HOH 3 764 O 85.6 161.2 110.2 79.7 83.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA 1 701 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL 1 116 O REMARK 620 2 ALA 1 117 O 82.6 REMARK 620 3 ALA 1 119 O 95.4 103.5 REMARK 620 4 THR 1 144 OG1 85.3 144.9 110.5 REMARK 620 5 HOH 1 755 O 175.1 101.3 86.5 89.8 REMARK 620 6 HOH 1 757 O 115.7 76.3 148.4 79.6 63.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN 1 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS 1 169 SG REMARK 620 2 CYS 1 172 SG 127.8 REMARK 620 3 CYS 1 240 SG 104.5 109.4 REMARK 620 4 CYS 1 243 SG 109.5 90.7 115.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA 1 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS 1 243 O REMARK 620 2 HOH 1 800 O 86.0 REMARK 620 3 HOH 1 801 O 162.9 86.0 REMARK 620 4 HOH 1 802 O 111.9 87.8 82.9 REMARK 620 5 HOH 3 772 O 96.3 154.3 84.5 114.6 REMARK 620 6 HOH 3 809 O 83.2 78.3 80.4 158.9 76.6 REMARK 620 7 HOH 3 810 O 76.3 135.5 119.6 62.8 69.3 137.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA 3 702 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL 3 116 O REMARK 620 2 ALA 3 117 O 81.9 REMARK 620 3 ALA 3 119 O 89.6 95.8 REMARK 620 4 THR 3 144 OG1 93.4 147.6 116.3 REMARK 620 5 HOH 3 796 O 110.4 75.9 156.5 75.9 REMARK 620 6 HOH 3 808 O 166.6 94.6 77.8 96.3 81.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN 3 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS 3 169 SG REMARK 620 2 CYS 3 172 SG 123.8 REMARK 620 3 CYS 3 240 SG 103.2 112.9 REMARK 620 4 CYS 3 243 SG 113.1 91.4 112.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN 1 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN 3 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA 3 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA 1 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA 1 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA 3 702 DBREF 1ZUD 1 1 251 UNP P30138 THIF_ECOLI 1 251 DBREF 1ZUD 3 1 251 UNP P30138 THIF_ECOLI 1 251 DBREF 1ZUD 2 1 66 UNP O32583 THIS_ECOLI 1 66 DBREF 1ZUD 4 1 66 UNP O32583 THIS_ECOLI 1 66 SEQRES 1 1 251 MET ASN ASP ARG ASP PHE MET ARG TYR SER ARG GLN ILE SEQRES 2 1 251 LEU LEU ASP ASP ILE ALA LEU ASP GLY GLN GLN LYS LEU SEQRES 3 1 251 LEU ASP SER GLN VAL LEU ILE ILE GLY LEU GLY GLY LEU SEQRES 4 1 251 GLY THR PRO ALA ALA LEU TYR LEU ALA GLY ALA GLY VAL SEQRES 5 1 251 GLY THR LEU VAL LEU ALA ASP ASP ASP ASP VAL HIS LEU SEQRES 6 1 251 SER ASN LEU GLN ARG GLN ILE LEU PHE THR THR GLU ASP SEQRES 7 1 251 ILE ASP ARG PRO LYS SER GLN VAL SER GLN GLN ARG LEU SEQRES 8 1 251 THR GLN LEU ASN PRO ASP ILE GLN LEU THR ALA LEU GLN SEQRES 9 1 251 GLN ARG LEU THR GLY GLU ALA LEU LYS ASP ALA VAL ALA SEQRES 10 1 251 ARG ALA ASP VAL VAL LEU ASP CYS THR ASP ASN MET ALA SEQRES 11 1 251 THR ARG GLN GLU ILE ASN ALA ALA CYS VAL ALA LEU ASN SEQRES 12 1 251 THR PRO LEU ILE THR ALA SER ALA VAL GLY PHE GLY GLY SEQRES 13 1 251 GLN LEU MET VAL LEU THR PRO PRO TRP GLU GLN GLY CYS SEQRES 14 1 251 TYR ARG CYS LEU TRP PRO ASP ASN GLN GLU PRO GLU ARG SEQRES 15 1 251 ASN CYS ARG THR ALA GLY VAL VAL GLY PRO VAL VAL GLY SEQRES 16 1 251 VAL MET GLY THR LEU GLN ALA LEU GLU ALA ILE LYS LEU SEQRES 17 1 251 LEU SER GLY ILE GLU THR PRO ALA GLY GLU LEU ARG LEU SEQRES 18 1 251 PHE ASP GLY LYS SER SER GLN TRP ARG SER LEU ALA LEU SEQRES 19 1 251 ARG ARG ALA SER GLY CYS PRO VAL CYS GLY GLY SER ASN SEQRES 20 1 251 ALA ASP PRO VAL SEQRES 1 2 66 MET GLN ILE LEU PHE ASN ASP GLN ALA MET GLN CYS ALA SEQRES 2 2 66 ALA GLY GLN THR VAL HIS GLU LEU LEU GLU GLN LEU ASP SEQRES 3 2 66 GLN ARG GLN ALA GLY ALA ALA LEU ALA ILE ASN GLN GLN SEQRES 4 2 66 ILE VAL PRO ARG GLU GLN TRP ALA GLN HIS ILE VAL GLN SEQRES 5 2 66 ASP GLY ASP GLN ILE LEU LEU PHE GLN VAL ILE ALA GLY SEQRES 6 2 66 GLY SEQRES 1 3 251 MET ASN ASP ARG ASP PHE MET ARG TYR SER ARG GLN ILE SEQRES 2 3 251 LEU LEU ASP ASP ILE ALA LEU ASP GLY GLN GLN LYS LEU SEQRES 3 3 251 LEU ASP SER GLN VAL LEU ILE ILE GLY LEU GLY GLY LEU SEQRES 4 3 251 GLY THR PRO ALA ALA LEU TYR LEU ALA GLY ALA GLY VAL SEQRES 5 3 251 GLY THR LEU VAL LEU ALA ASP ASP ASP ASP VAL HIS LEU SEQRES 6 3 251 SER ASN LEU GLN ARG GLN ILE LEU PHE THR THR GLU ASP SEQRES 7 3 251 ILE ASP ARG PRO LYS SER GLN VAL SER GLN GLN ARG LEU SEQRES 8 3 251 THR GLN LEU ASN PRO ASP ILE GLN LEU THR ALA LEU GLN SEQRES 9 3 251 GLN ARG LEU THR GLY GLU ALA LEU LYS ASP ALA VAL ALA SEQRES 10 3 251 ARG ALA ASP VAL VAL LEU ASP CYS THR ASP ASN MET ALA SEQRES 11 3 251 THR ARG GLN GLU ILE ASN ALA ALA CYS VAL ALA LEU ASN SEQRES 12 3 251 THR PRO LEU ILE THR ALA SER ALA VAL GLY PHE GLY GLY SEQRES 13 3 251 GLN LEU MET VAL LEU THR PRO PRO TRP GLU GLN GLY CYS SEQRES 14 3 251 TYR ARG CYS LEU TRP PRO ASP ASN GLN GLU PRO GLU ARG SEQRES 15 3 251 ASN CYS ARG THR ALA GLY VAL VAL GLY PRO VAL VAL GLY SEQRES 16 3 251 VAL MET GLY THR LEU GLN ALA LEU GLU ALA ILE LYS LEU SEQRES 17 3 251 LEU SER GLY ILE GLU THR PRO ALA GLY GLU LEU ARG LEU SEQRES 18 3 251 PHE ASP GLY LYS SER SER GLN TRP ARG SER LEU ALA LEU SEQRES 19 3 251 ARG ARG ALA SER GLY CYS PRO VAL CYS GLY GLY SER ASN SEQRES 20 3 251 ALA ASP PRO VAL SEQRES 1 4 66 MET GLN ILE LEU PHE ASN ASP GLN ALA MET GLN CYS ALA SEQRES 2 4 66 ALA GLY GLN THR VAL HIS GLU LEU LEU GLU GLN LEU ASP SEQRES 3 4 66 GLN ARG GLN ALA GLY ALA ALA LEU ALA ILE ASN GLN GLN SEQRES 4 4 66 ILE VAL PRO ARG GLU GLN TRP ALA GLN HIS ILE VAL GLN SEQRES 5 4 66 ASP GLY ASP GLN ILE LEU LEU PHE GLN VAL ILE ALA GLY SEQRES 6 4 66 GLY HET ZN 1 501 1 HET CA 1 602 1 HET NA 1 701 1 HET ZN 3 502 1 HET CA 3 601 1 HET NA 3 702 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM NA SODIUM ION FORMUL 5 ZN 2(ZN 2+) FORMUL 6 CA 2(CA 2+) FORMUL 7 NA 2(NA 1+) FORMUL 11 HOH *390(H2 O) HELIX 1 1 ASN 1 2 TYR 1 9 1 8 HELIX 2 2 TYR 1 9 LEU 1 14 1 6 HELIX 3 3 ILE 1 18 ASP 1 28 1 11 HELIX 4 4 LEU 1 39 ALA 1 50 1 12 HELIX 5 5 HIS 1 64 LEU 1 68 5 5 HELIX 6 6 THR 1 75 ILE 1 79 5 5 HELIX 7 7 PRO 1 82 ASN 1 95 1 14 HELIX 8 8 THR 1 108 ALA 1 119 1 12 HELIX 9 9 ASN 1 128 LEU 1 142 1 15 HELIX 10 10 CYS 1 169 TRP 1 174 1 6 HELIX 11 11 VAL 1 190 GLY 1 211 1 22 HELIX 12 12 THR 2 17 ASP 2 26 1 10 HELIX 13 13 PRO 2 42 TRP 2 46 5 5 HELIX 14 14 ASN 3 2 TYR 3 9 1 8 HELIX 15 15 TYR 3 9 LEU 3 14 1 6 HELIX 16 16 ILE 3 18 ASP 3 28 1 11 HELIX 17 17 LEU 3 39 GLY 3 51 1 13 HELIX 18 18 HIS 3 64 LEU 3 68 5 5 HELIX 19 19 THR 3 75 ILE 3 79 5 5 HELIX 20 20 PRO 3 82 ASN 3 95 1 14 HELIX 21 21 THR 3 108 ALA 3 119 1 12 HELIX 22 22 ASN 3 128 LEU 3 142 1 15 HELIX 23 23 CYS 3 169 TRP 3 174 1 6 HELIX 24 24 VAL 3 190 GLY 3 211 1 22 HELIX 25 25 THR 4 17 LEU 4 25 1 9 HELIX 26 26 PRO 4 42 TRP 4 46 5 5 SHEET 1 A 8 GLN 1 99 LEU 1 103 0 SHEET 2 A 8 THR 1 54 ALA 1 58 1 N LEU 1 57 O THR 1 101 SHEET 3 A 8 GLN 1 30 ILE 1 34 1 N ILE 1 33 O VAL 1 56 SHEET 4 A 8 VAL 1 121 ASP 1 124 1 O LEU 1 123 N LEU 1 32 SHEET 5 A 8 LEU 1 146 VAL 1 152 1 O ILE 1 147 N VAL 1 122 SHEET 6 A 8 GLY 1 155 LEU 1 161 -1 O LEU 1 161 N LEU 1 146 SHEET 7 A 8 GLU 1 218 ASP 1 223 -1 O ARG 1 220 N LEU 1 158 SHEET 8 A 8 GLN 1 228 ALA 1 233 -1 O LEU 1 232 N LEU 1 219 SHEET 1 B 5 GLN 2 8 MET 2 10 0 SHEET 2 B 5 ILE 2 3 PHE 2 5 -1 N PHE 2 5 O GLN 2 8 SHEET 3 B 5 GLN 2 56 GLN 2 61 1 O ILE 2 57 N LEU 2 4 SHEET 4 B 5 ALA 2 32 ILE 2 36 -1 N ALA 2 33 O PHE 2 60 SHEET 5 B 5 GLN 2 39 ILE 2 40 -1 O GLN 2 39 N ILE 2 36 SHEET 1 C 8 GLN 3 99 LEU 3 103 0 SHEET 2 C 8 THR 3 54 ALA 3 58 1 N LEU 3 57 O THR 3 101 SHEET 3 C 8 GLN 3 30 ILE 3 34 1 N VAL 3 31 O VAL 3 56 SHEET 4 C 8 VAL 3 121 ASP 3 124 1 O LEU 3 123 N LEU 3 32 SHEET 5 C 8 LEU 3 146 VAL 3 152 1 O ILE 3 147 N VAL 3 122 SHEET 6 C 8 GLY 3 155 LEU 3 161 -1 O LEU 3 161 N LEU 3 146 SHEET 7 C 8 GLU 3 218 ASP 3 223 -1 O ARG 3 220 N LEU 3 158 SHEET 8 C 8 GLN 3 228 ALA 3 233 -1 O LEU 3 232 N LEU 3 219 SHEET 1 D 5 GLN 4 8 GLN 4 11 0 SHEET 2 D 5 GLN 4 2 PHE 4 5 -1 N PHE 4 5 O GLN 4 8 SHEET 3 D 5 GLN 4 56 GLN 4 61 1 O ILE 4 57 N LEU 4 4 SHEET 4 D 5 ALA 4 32 ILE 4 36 -1 N ALA 4 33 O PHE 4 60 SHEET 5 D 5 GLN 4 39 ILE 4 40 -1 O GLN 4 39 N ILE 4 36 LINK O LEU 1 14 CA CA 3 601 1655 1555 2.35 LINK OD2 ASP 1 16 CA CA 3 601 1655 1555 2.32 LINK O VAL 1 116 NA NA 1 701 1555 1555 2.33 LINK O ALA 1 117 NA NA 1 701 1555 1555 2.44 LINK O ALA 1 119 NA NA 1 701 1555 1555 2.33 LINK OG1 THR 1 144 NA NA 1 701 1555 1555 2.56 LINK SG CYS 1 169 ZN ZN 1 501 1555 1555 2.29 LINK SG CYS 1 172 ZN ZN 1 501 1555 1555 2.29 LINK SG CYS 1 240 ZN ZN 1 501 1555 1555 2.33 LINK SG CYS 1 243 ZN ZN 1 501 1555 1555 2.42 LINK O CYS 1 243 CA CA 1 602 1555 1555 2.25 LINK CA CA 1 602 O HOH 1 800 1555 1555 2.43 LINK CA CA 1 602 O HOH 1 801 1555 1555 2.37 LINK CA CA 1 602 O HOH 1 802 1555 1555 2.39 LINK CA CA 1 602 O HOH 3 772 1555 2565 2.41 LINK CA CA 1 602 O HOH 3 809 1555 2565 2.33 LINK CA CA 1 602 O HOH 3 810 1555 2565 2.42 LINK NA NA 1 701 O HOH 1 755 1555 1555 2.37 LINK NA NA 1 701 O HOH 1 757 1555 1555 2.69 LINK O HOH 1 704 CA CA 3 601 1655 1555 2.38 LINK O LEU 3 14 CA CA 3 601 1555 1555 2.40 LINK OD2 ASP 3 16 CA CA 3 601 1555 1555 2.39 LINK O VAL 3 116 NA NA 3 702 1555 1555 2.44 LINK O ALA 3 117 NA NA 3 702 1555 1555 2.58 LINK O ALA 3 119 NA NA 3 702 1555 1555 2.42 LINK OG1 THR 3 144 NA NA 3 702 1555 1555 2.42 LINK SG CYS 3 169 ZN ZN 3 502 1555 1555 2.39 LINK SG CYS 3 172 ZN ZN 3 502 1555 1555 2.30 LINK SG CYS 3 240 ZN ZN 3 502 1555 1555 2.25 LINK SG CYS 3 243 ZN ZN 3 502 1555 1555 2.42 LINK CA CA 3 601 O HOH 3 764 1555 1555 2.33 LINK NA NA 3 702 O HOH 3 796 1555 1555 2.53 LINK NA NA 3 702 O HOH 3 808 1555 1555 2.41 CISPEP 1 PRO 1 163 PRO 1 164 0 0.42 CISPEP 2 PRO 3 163 PRO 3 164 0 0.53 SITE 1 AC1 4 CYS 1 169 CYS 1 172 CYS 1 240 CYS 1 243 SITE 1 AC2 4 CYS 3 169 CYS 3 172 CYS 3 240 CYS 3 243 SITE 1 AC3 6 LEU 1 14 ASP 1 16 HOH 1 704 LEU 3 14 SITE 2 AC3 6 ASP 3 16 HOH 3 764 SITE 1 AC4 7 CYS 1 243 HOH 1 800 HOH 1 801 HOH 1 802 SITE 2 AC4 7 HOH 3 772 HOH 3 809 HOH 3 810 SITE 1 AC5 6 VAL 1 116 ALA 1 117 ALA 1 119 THR 1 144 SITE 2 AC5 6 HOH 1 755 HOH 1 757 SITE 1 AC6 6 VAL 3 116 ALA 3 117 ALA 3 119 THR 3 144 SITE 2 AC6 6 HOH 3 796 HOH 3 808 CRYST1 49.505 111.171 114.153 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020200 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008995 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008760 0.00000