HEADER ISOMERASE 02-JUN-05 1ZVU TITLE STRUCTURE OF THE FULL-LENGTH E. COLI PARC SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOPOISOMERASE IV SUBUNIT A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PARC27 (RESIDUES 27-742); COMPND 5 EC: 5.99.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PARC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS BETA-PINWHEEL, ATPASE, SUPERCOILING, DECATENATION, DNA BINDING, DNA KEYWDS 2 TOPOLOGY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.D.CORBETT,A.J.SCHOEFFLER,N.D.THOMSEN,J.M.BERGER REVDAT 5 23-AUG-23 1ZVU 1 REMARK REVDAT 4 13-JUL-11 1ZVU 1 VERSN REVDAT 3 24-FEB-09 1ZVU 1 VERSN REVDAT 2 02-AUG-05 1ZVU 1 JRNL REVDAT 1 05-JUL-05 1ZVU 0 JRNL AUTH K.D.CORBETT,A.J.SCHOEFFLER,N.D.THOMSEN,J.M.BERGER JRNL TITL THE STRUCTURAL BASIS FOR SUBSTRATE SPECIFICITY IN DNA JRNL TITL 2 TOPOISOMERASE IV. JRNL REF J.MOL.BIOL. V. 351 545 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16023670 JRNL DOI 10.1016/J.JMB.2005.06.029 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 18167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 992 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1303 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5367 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 35 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 37.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.99000 REMARK 3 B22 (A**2) : 2.51000 REMARK 3 B33 (A**2) : -3.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.511 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.376 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 44.648 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.896 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.830 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5454 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7368 ; 1.087 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 681 ; 4.978 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;37.830 ;23.837 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1014 ;17.714 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 53 ;19.388 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 835 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4074 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2442 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3644 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 164 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.224 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3522 ; 0.386 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5511 ; 0.680 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2138 ; 0.719 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1857 ; 1.268 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 240 REMARK 3 RESIDUE RANGE : A 324 A 358 REMARK 3 RESIDUE RANGE : A 454 A 484 REMARK 3 ORIGIN FOR THE GROUP (A): -20.4577 2.7782 -13.8809 REMARK 3 T TENSOR REMARK 3 T11: -0.0974 T22: -0.0970 REMARK 3 T33: -0.0844 T12: 0.0759 REMARK 3 T13: -0.0162 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.1367 L22: 1.2304 REMARK 3 L33: 1.5134 L12: -0.7268 REMARK 3 L13: 0.0105 L23: 0.0343 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: -0.1147 S13: 0.0316 REMARK 3 S21: 0.0367 S22: 0.0292 S23: -0.0435 REMARK 3 S31: 0.0326 S32: -0.0563 S33: -0.0023 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 241 A 323 REMARK 3 RESIDUE RANGE : A 485 A 495 REMARK 3 ORIGIN FOR THE GROUP (A): -37.9226 11.5337 14.1215 REMARK 3 T TENSOR REMARK 3 T11: -0.1896 T22: -0.0937 REMARK 3 T33: -0.1284 T12: 0.0870 REMARK 3 T13: 0.0125 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 3.4197 L22: 4.8534 REMARK 3 L33: 6.0805 L12: -1.7502 REMARK 3 L13: 0.1465 L23: 2.0041 REMARK 3 S TENSOR REMARK 3 S11: -0.0410 S12: -0.0910 S13: -0.0249 REMARK 3 S21: 0.2748 S22: 0.0191 S23: 0.2002 REMARK 3 S31: -0.1016 S32: -0.2642 S33: 0.0219 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 359 A 453 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1714 -17.8015 -50.7721 REMARK 3 T TENSOR REMARK 3 T11: -0.0496 T22: -0.0911 REMARK 3 T33: -0.0813 T12: 0.0829 REMARK 3 T13: -0.0191 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.0641 L22: 3.8765 REMARK 3 L33: 2.8501 L12: -1.7107 REMARK 3 L13: -1.1310 L23: 1.2862 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: -0.0727 S13: -0.0630 REMARK 3 S21: -0.3905 S22: -0.0560 S23: 0.1361 REMARK 3 S31: -0.0937 S32: 0.2077 S33: 0.0933 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 496 A 740 REMARK 3 ORIGIN FOR THE GROUP (A): -60.4324 47.4939 14.2785 REMARK 3 T TENSOR REMARK 3 T11: -0.1346 T22: 0.0292 REMARK 3 T33: -0.0485 T12: -0.0554 REMARK 3 T13: 0.0722 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 2.7153 L22: 2.2877 REMARK 3 L33: 1.5559 L12: -1.1097 REMARK 3 L13: 0.7893 L23: -0.5640 REMARK 3 S TENSOR REMARK 3 S11: -0.1295 S12: -0.1923 S13: -0.2427 REMARK 3 S21: 0.1843 S22: 0.0937 S23: 0.0781 REMARK 3 S31: -0.0370 S32: 0.0206 S33: 0.0358 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZVU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000033181. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1157 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19320 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13400 REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38700 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ID 1AB4 (E. COLI GYRA NTD), RELATED ENTRY 1ZVT REMARK 200 (E. COLI PARC CTD) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, NACL, GLYCEROL, PEG-6000, 1,3 REMARK 280 -BUTANEDIOL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 128.99500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.07050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 128.99500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.07050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED BY THE TWO- REMARK 300 FOLD AXIS: -X, -Y-1, Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -62.14100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 27 REMARK 465 ASN A 55 REMARK 465 ALA A 56 REMARK 465 SER A 57 REMARK 465 ALA A 58 REMARK 465 LYS A 59 REMARK 465 PHE A 60 REMARK 465 LYS A 61 REMARK 465 LYS A 62 REMARK 465 SER A 63 REMARK 465 ALA A 64 REMARK 465 HIS A 516 REMARK 465 ASP A 517 REMARK 465 ILE A 518 REMARK 465 ASP A 519 REMARK 465 ALA A 520 REMARK 465 PRO A 521 REMARK 465 GLY A 522 REMARK 465 LEU A 523 REMARK 465 ASN A 524 REMARK 465 TYR A 525 REMARK 465 LYS A 526 REMARK 465 ALA A 527 REMARK 465 GLY A 528 REMARK 465 ASP A 529 REMARK 465 SER A 530 REMARK 465 GLY A 565 REMARK 465 GLN A 566 REMARK 465 GLY A 567 REMARK 465 SER A 741 REMARK 465 PRO A 742 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 52 38.02 -82.30 REMARK 500 TRP A 106 16.36 58.51 REMARK 500 ALA A 108 -79.07 -26.25 REMARK 500 PRO A 109 -131.87 -108.91 REMARK 500 LEU A 151 -169.40 -129.60 REMARK 500 THR A 169 -160.99 -76.84 REMARK 500 ILE A 172 41.48 37.04 REMARK 500 ALA A 173 -150.82 -65.13 REMARK 500 ASP A 249 93.66 24.08 REMARK 500 HIS A 259 122.52 -37.55 REMARK 500 LYS A 277 24.21 -65.80 REMARK 500 LEU A 279 54.23 39.98 REMARK 500 GLU A 288 43.90 -101.12 REMARK 500 ASP A 290 -108.01 -129.07 REMARK 500 HIS A 291 -3.14 -162.28 REMARK 500 SER A 303 -146.06 -129.22 REMARK 500 ASP A 397 -72.35 -51.41 REMARK 500 SER A 405 -72.37 -64.34 REMARK 500 PHE A 407 -26.52 62.42 REMARK 500 GLU A 411 30.40 -64.81 REMARK 500 THR A 412 -27.46 -152.47 REMARK 500 GLU A 491 -9.56 -56.49 REMARK 500 PRO A 496 -74.21 -14.13 REMARK 500 SER A 497 90.53 65.87 REMARK 500 PRO A 499 127.80 -30.23 REMARK 500 ALA A 513 -141.11 -93.95 REMARK 500 LYS A 532 -47.52 -146.33 REMARK 500 SER A 562 -160.00 -72.95 REMARK 500 LYS A 573 -28.57 -153.48 REMARK 500 ASP A 599 5.38 -66.62 REMARK 500 LEU A 621 -80.83 -87.48 REMARK 500 ASP A 638 122.60 -177.56 REMARK 500 ASP A 659 -13.31 -168.18 REMARK 500 LEU A 663 -165.17 -122.70 REMARK 500 GLU A 683 -82.24 -65.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZVT RELATED DB: PDB REMARK 900 E. COLI PARC CTD DBREF 1ZVU A 27 742 UNP P20082 PARC_ECOLI 27 742 SEQRES 1 A 716 MET ASP ARG ALA LEU PRO PHE ILE GLY ASP GLY LEU LYS SEQRES 2 A 716 PRO VAL GLN ARG ARG ILE VAL TYR ALA MET SER GLU LEU SEQRES 3 A 716 GLY LEU ASN ALA SER ALA LYS PHE LYS LYS SER ALA ARG SEQRES 4 A 716 THR VAL GLY ASP VAL LEU GLY LYS TYR HIS PRO HIS GLY SEQRES 5 A 716 ASP SER ALA CYS TYR GLU ALA MET VAL LEU MET ALA GLN SEQRES 6 A 716 PRO PHE SER TYR ARG TYR PRO LEU VAL ASP GLY GLN GLY SEQRES 7 A 716 ASN TRP GLY ALA PRO ASP ASP PRO LYS SER PHE ALA ALA SEQRES 8 A 716 MET ARG TYR THR GLU SER ARG LEU SER LYS TYR SER GLU SEQRES 9 A 716 LEU LEU LEU SER GLU LEU GLY GLN GLY THR ALA ASP TRP SEQRES 10 A 716 VAL PRO ASN PHE ASP GLY THR LEU GLN GLU PRO LYS MET SEQRES 11 A 716 LEU PRO ALA ARG LEU PRO ASN ILE LEU LEU ASN GLY THR SEQRES 12 A 716 THR GLY ILE ALA VAL GLY MET ALA THR ASP ILE PRO PRO SEQRES 13 A 716 HIS ASN LEU ARG GLU VAL ALA GLN ALA ALA ILE ALA LEU SEQRES 14 A 716 ILE ASP GLN PRO LYS THR THR LEU ASP GLN LEU LEU ASP SEQRES 15 A 716 ILE VAL GLN GLY PRO ASP TYR PRO THR GLU ALA GLU ILE SEQRES 16 A 716 ILE THR SER ARG ALA GLU ILE ARG LYS ILE TYR GLU ASN SEQRES 17 A 716 GLY ARG GLY SER VAL ARG MET ARG ALA VAL TRP LYS LYS SEQRES 18 A 716 GLU ASP GLY ALA VAL VAL ILE SER ALA LEU PRO HIS GLN SEQRES 19 A 716 VAL SER GLY ALA ARG VAL LEU GLU GLN ILE ALA ALA GLN SEQRES 20 A 716 MET ARG ASN LYS LYS LEU PRO MET VAL ASP ASP LEU ARG SEQRES 21 A 716 ASP GLU SER ASP HIS GLU ASN PRO THR ARG LEU VAL ILE SEQRES 22 A 716 VAL PRO ARG SER ASN ARG VAL ASP MET ASP GLN VAL MET SEQRES 23 A 716 ASN HIS LEU PHE ALA THR THR ASP LEU GLU LYS SER TYR SEQRES 24 A 716 ARG ILE ASN LEU ASN MET ILE GLY LEU ASP GLY ARG PRO SEQRES 25 A 716 ALA VAL LYS ASN LEU LEU GLU ILE LEU SER GLU TRP LEU SEQRES 26 A 716 VAL PHE ARG ARG ASP THR VAL ARG ARG ARG LEU ASN TYR SEQRES 27 A 716 ARG LEU GLU LYS VAL LEU LYS ARG LEU HIS ILE LEU GLU SEQRES 28 A 716 GLY LEU LEU VAL ALA PHE LEU ASN ILE ASP GLU VAL ILE SEQRES 29 A 716 GLU ILE ILE ARG ASN GLU ASP GLU PRO LYS PRO ALA LEU SEQRES 30 A 716 MET SER ARG PHE GLY LEU THR GLU THR GLN ALA GLU ALA SEQRES 31 A 716 ILE LEU GLU LEU LYS LEU ARG HIS LEU ALA LYS LEU GLU SEQRES 32 A 716 GLU MET LYS ILE ARG GLY GLU GLN SER GLU LEU GLU LYS SEQRES 33 A 716 GLU ARG ASP GLN LEU GLN GLY ILE LEU ALA SER GLU ARG SEQRES 34 A 716 LYS MET ASN ASN LEU LEU LYS LYS GLU LEU GLN ALA ASP SEQRES 35 A 716 ALA GLN ALA TYR GLY ASP ASP ARG ARG SER PRO LEU GLN SEQRES 36 A 716 GLU ARG GLU GLU ALA LYS ALA MET SER GLU HIS ASP MET SEQRES 37 A 716 LEU PRO SER GLU PRO VAL THR ILE VAL LEU SER GLN MET SEQRES 38 A 716 GLY TRP VAL ARG SER ALA LYS GLY HIS ASP ILE ASP ALA SEQRES 39 A 716 PRO GLY LEU ASN TYR LYS ALA GLY ASP SER PHE LYS ALA SEQRES 40 A 716 ALA VAL LYS GLY LYS SER ASN GLN PRO VAL VAL PHE VAL SEQRES 41 A 716 ASP SER THR GLY ARG SER TYR ALA ILE ASP PRO ILE THR SEQRES 42 A 716 LEU PRO SER ALA ARG GLY GLN GLY GLU PRO LEU THR GLY SEQRES 43 A 716 LYS LEU THR LEU PRO PRO GLY ALA THR VAL ASP HIS MET SEQRES 44 A 716 LEU MET GLU SER ASP ASP GLN LYS LEU LEU MET ALA SER SEQRES 45 A 716 ASP ALA GLY TYR GLY PHE VAL CYS THR PHE ASN ASP LEU SEQRES 46 A 716 VAL ALA ARG ASN ARG ALA GLY LYS ALA LEU ILE THR LEU SEQRES 47 A 716 PRO GLU ASN ALA HIS VAL MET PRO PRO VAL VAL ILE GLU SEQRES 48 A 716 ASP ALA SER ASP MET LEU LEU ALA ILE THR GLN ALA GLY SEQRES 49 A 716 ARG MET LEU MET PHE PRO VAL SER ASP LEU PRO GLN LEU SEQRES 50 A 716 SER LYS GLY LYS GLY ASN LYS ILE ILE ASN ILE PRO SER SEQRES 51 A 716 ALA GLU ALA ALA ARG GLY GLU ASP GLY LEU ALA GLN LEU SEQRES 52 A 716 TYR VAL LEU PRO PRO GLN SER THR LEU THR ILE HIS VAL SEQRES 53 A 716 GLY LYS ARG LYS ILE LYS LEU ARG PRO GLU GLU LEU GLN SEQRES 54 A 716 LYS VAL THR GLY GLU ARG GLY ARG ARG GLY THR LEU MET SEQRES 55 A 716 ARG GLY LEU GLN ARG ILE ASP ARG VAL GLU ILE ASP SER SEQRES 56 A 716 PRO FORMUL 2 HOH *35(H2 O) HELIX 1 1 LYS A 39 SER A 50 1 12 HELIX 2 2 THR A 66 GLY A 72 1 7 HELIX 3 3 ASP A 79 ALA A 90 1 12 HELIX 4 4 ARG A 119 THR A 121 5 3 HELIX 5 5 SER A 129 SER A 134 1 6 HELIX 6 6 PRO A 162 GLY A 168 1 7 HELIX 7 7 ASN A 184 GLN A 198 1 15 HELIX 8 8 THR A 202 LEU A 207 1 6 HELIX 9 9 ALA A 226 GLY A 235 1 10 HELIX 10 10 SER A 262 ASN A 276 1 15 HELIX 11 11 ASP A 307 THR A 319 1 13 HELIX 12 12 ASN A 342 ASN A 385 1 44 HELIX 13 13 ASN A 385 GLU A 396 1 12 HELIX 14 14 GLU A 398 ARG A 406 1 9 HELIX 15 15 THR A 412 GLU A 419 1 8 HELIX 16 16 LYS A 421 LEU A 425 5 5 HELIX 17 17 ALA A 426 SER A 453 1 28 HELIX 18 18 SER A 453 GLY A 473 1 21 HELIX 19 19 ASN A 609 VAL A 612 5 4 HELIX 20 20 PRO A 675 ARG A 681 1 7 HELIX 21 21 ARG A 710 GLN A 715 1 6 SHEET 1 A 2 VAL A 100 GLY A 102 0 SHEET 2 A 2 SER A 123 LEU A 125 -1 O ARG A 124 N ASP A 101 SHEET 1 B 2 TRP A 143 PRO A 145 0 SHEET 2 B 2 GLN A 152 PRO A 154 -1 O GLU A 153 N VAL A 144 SHEET 1 C 3 GLU A 220 ILE A 221 0 SHEET 2 C 3 ARG A 236 ARG A 242 -1 O ARG A 242 N GLU A 220 SHEET 3 C 3 GLU A 322 ASN A 328 -1 O ILE A 327 N GLY A 237 SHEET 1 D 4 VAL A 244 GLU A 248 0 SHEET 2 D 4 ALA A 251 ALA A 256 -1 O SER A 255 N VAL A 244 SHEET 3 D 4 LEU A 297 PRO A 301 -1 O ILE A 299 N VAL A 252 SHEET 4 D 4 VAL A 282 ASP A 287 -1 N ARG A 286 O VAL A 298 SHEET 1 E 2 ASN A 330 ILE A 332 0 SHEET 2 E 2 PRO A 338 VAL A 340 -1 O ALA A 339 N MET A 331 SHEET 1 F 3 TRP A 509 SER A 512 0 SHEET 2 F 3 ILE A 502 SER A 505 -1 N VAL A 503 O ARG A 511 SHEET 3 F 3 ALA A 533 VAL A 535 -1 O VAL A 535 N ILE A 502 SHEET 1 G 4 VAL A 582 LEU A 586 0 SHEET 2 G 4 VAL A 543 ASP A 547 -1 N VAL A 544 O LEU A 586 SHEET 3 G 4 ARG A 551 ILE A 555 -1 O ARG A 551 N ASP A 547 SHEET 4 G 4 LYS A 619 ALA A 620 -1 O LYS A 619 N SER A 552 SHEET 1 H 4 VAL A 634 VAL A 635 0 SHEET 2 H 4 LYS A 593 ALA A 597 -1 N LEU A 595 O VAL A 634 SHEET 3 H 4 TYR A 602 THR A 607 -1 O PHE A 604 N MET A 596 SHEET 4 H 4 ASN A 669 LYS A 670 -1 O ASN A 669 N GLY A 603 SHEET 1 I 4 LEU A 686 LEU A 692 0 SHEET 2 I 4 MET A 642 THR A 647 -1 N LEU A 644 O TYR A 690 SHEET 3 I 4 ARG A 651 PRO A 656 -1 O PHE A 655 N LEU A 643 SHEET 4 I 4 THR A 726 LEU A 727 -1 O THR A 726 N MET A 652 SHEET 1 J 3 ARG A 705 LEU A 709 0 SHEET 2 J 3 THR A 697 VAL A 702 -1 N LEU A 698 O LEU A 709 SHEET 3 J 3 ARG A 736 ASP A 740 -1 O ASP A 740 N THR A 697 CRYST1 257.990 62.141 63.998 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003876 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016092 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015625 0.00000