data_1ZY6
#
_entry.id 1ZY6
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.398
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1ZY6 pdb_00001zy6 10.2210/pdb1zy6/pdb
RCSB RCSB033257 ? ?
WWPDB D_1000033257 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2006-06-13
2 'Structure model' 1 1 2008-04-30
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2022-03-02
5 'Structure model' 1 4 2024-11-13
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Database references'
4 4 'Structure model' 'Derived calculations'
5 5 'Structure model' 'Data collection'
6 5 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' database_2
2 4 'Structure model' pdbx_struct_assembly
3 4 'Structure model' pdbx_struct_oper_list
4 4 'Structure model' struct_conn
5 4 'Structure model' struct_ref_seq_dif
6 4 'Structure model' struct_site
7 5 'Structure model' chem_comp_atom
8 5 'Structure model' chem_comp_bond
9 5 'Structure model' pdbx_entry_details
10 5 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
4 4 'Structure model' '_struct_ref_seq_dif.details'
5 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
6 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
7 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1ZY6
_pdbx_database_status.recvd_initial_deposition_date 2005-06-09
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr REL
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 1PG1
_pdbx_database_related.details
'Solution structure of protegrin-1, a broad-spectrum antimicrobial peptide from porcine leukocytes.'
_pdbx_database_related.content_type unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Wu, X.' 1
'Mani, R.' 2
'Tang, M.' 3
'Buffy, J.J.' 4
'Waring, A.J.' 5
'Sherman, M.A.' 6
'Hong, M.' 7
#
_citation.id primary
_citation.title
'Membrane-Bound Dimer Structure of a beta-Hairpin Antimicrobial Peptide from Rotational-Echo Double-Resonance Solid-State NMR.'
_citation.journal_abbrev Biochemistry
_citation.journal_volume 45
_citation.page_first 8341
_citation.page_last 8349
_citation.year 2006
_citation.journal_id_ASTM BICHAW
_citation.country US
_citation.journal_id_ISSN 0006-2960
_citation.journal_id_CSD 0033
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 16819833
_citation.pdbx_database_id_DOI 10.1021/bi060305b
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Mani, R.' 1 ?
primary 'Tang, M.' 2 ?
primary 'Wu, X.' 3 ?
primary 'Buffy, J.J.' 4 ?
primary 'Waring, A.J.' 5 ?
primary 'Sherman, M.A.' 6 ?
primary 'Hong, M.' 7 ?
#
_entity.id 1
_entity.type polymer
_entity.src_method syn
_entity.pdbx_description 'Protegrin 1'
_entity.formula_weight 2164.679
_entity.pdbx_number_of_molecules 2
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment ?
_entity.details ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'PG-1, Neutrophil peptide 1'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code 'RGGRLCYCRRRFCVCVGR(NH2)'
_entity_poly.pdbx_seq_one_letter_code_can RGGRLCYCRRRFCVCVGRX
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ARG n
1 2 GLY n
1 3 GLY n
1 4 ARG n
1 5 LEU n
1 6 CYS n
1 7 TYR n
1 8 CYS n
1 9 ARG n
1 10 ARG n
1 11 ARG n
1 12 PHE n
1 13 CYS n
1 14 VAL n
1 15 CYS n
1 16 VAL n
1 17 GLY n
1 18 ARG n
1 19 NH2 n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'BIOLOGICAL SEQUENCE WITH AMIDATED C-TERMINUS'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ARG 1 1 1 ARG ARG A . n
A 1 2 GLY 2 2 2 GLY GLY A . n
A 1 3 GLY 3 3 3 GLY GLY A . n
A 1 4 ARG 4 4 4 ARG ARG A . n
A 1 5 LEU 5 5 5 LEU LEU A . n
A 1 6 CYS 6 6 6 CYS CYS A . n
A 1 7 TYR 7 7 7 TYR TYR A . n
A 1 8 CYS 8 8 8 CYS CYS A . n
A 1 9 ARG 9 9 9 ARG ARG A . n
A 1 10 ARG 10 10 10 ARG ARG A . n
A 1 11 ARG 11 11 11 ARG ARG A . n
A 1 12 PHE 12 12 12 PHE PHE A . n
A 1 13 CYS 13 13 13 CYS CYS A . n
A 1 14 VAL 14 14 14 VAL VAL A . n
A 1 15 CYS 15 15 15 CYS CYS A . n
A 1 16 VAL 16 16 16 VAL VAL A . n
A 1 17 GLY 17 17 17 GLY GLY A . n
A 1 18 ARG 18 18 18 ARG ARG A . n
A 1 19 NH2 19 19 19 NH2 NH2 A . n
B 1 1 ARG 1 1 1 ARG ARG B . n
B 1 2 GLY 2 2 2 GLY GLY B . n
B 1 3 GLY 3 3 3 GLY GLY B . n
B 1 4 ARG 4 4 4 ARG ARG B . n
B 1 5 LEU 5 5 5 LEU LEU B . n
B 1 6 CYS 6 6 6 CYS CYS B . n
B 1 7 TYR 7 7 7 TYR TYR B . n
B 1 8 CYS 8 8 8 CYS CYS B . n
B 1 9 ARG 9 9 9 ARG ARG B . n
B 1 10 ARG 10 10 10 ARG ARG B . n
B 1 11 ARG 11 11 11 ARG ARG B . n
B 1 12 PHE 12 12 12 PHE PHE B . n
B 1 13 CYS 13 13 13 CYS CYS B . n
B 1 14 VAL 14 14 14 VAL VAL B . n
B 1 15 CYS 15 15 15 CYS CYS B . n
B 1 16 VAL 16 16 16 VAL VAL B . n
B 1 17 GLY 17 17 17 GLY GLY B . n
B 1 18 ARG 18 18 18 ARG ARG B . n
B 1 19 NH2 19 19 19 NH2 NH2 B . n
#
_exptl.entry_id 1ZY6
_exptl.method 'SOLID-STATE NMR'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol ?
_exptl_crystal.density_Matthews ?
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_diffrn.id 1
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type ?
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_database_PDB_matrix.entry_id 1ZY6
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1ZY6
_struct.title
;Membrane-bound dimer structure of Protegrin-1 (PG-1), a beta-Hairpin Antimicrobial Peptide in Lipid Bilayers from Rotational-Echo Double-Resonance Solid-State NMR
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1ZY6
_struct_keywords.pdbx_keywords ANTIBIOTIC
_struct_keywords.text 'beta-hairpin, solid state NMR, ANTIBIOTIC'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code PG1_PIG
_struct_ref.pdbx_db_accession P32194
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code RGGRLCYCRRRFCVCVGR
_struct_ref.pdbx_align_begin 131
_struct_ref.pdbx_db_isoform ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1ZY6 A 1 ? 18 ? P32194 131 ? 148 ? 1 18
2 1 1ZY6 B 1 ? 18 ? P32194 131 ? 148 ? 1 18
#
loop_
_struct_ref_seq_dif.align_id
_struct_ref_seq_dif.pdbx_pdb_id_code
_struct_ref_seq_dif.mon_id
_struct_ref_seq_dif.pdbx_pdb_strand_id
_struct_ref_seq_dif.seq_num
_struct_ref_seq_dif.pdbx_pdb_ins_code
_struct_ref_seq_dif.pdbx_seq_db_name
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_struct_ref_seq_dif.db_mon_id
_struct_ref_seq_dif.pdbx_seq_db_seq_num
_struct_ref_seq_dif.details
_struct_ref_seq_dif.pdbx_auth_seq_num
_struct_ref_seq_dif.pdbx_ordinal
1 1ZY6 NH2 A 19 ? UNP P32194 ? ? amidation 19 1
2 1ZY6 NH2 B 19 ? UNP P32194 ? ? amidation 19 2
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 15 SG ? ? A CYS 6 A CYS 15 1_555 ? ? ? ? ? ? ? 2.047 ? ?
disulf2 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 13 SG ? ? A CYS 8 A CYS 13 1_555 ? ? ? ? ? ? ? 2.042 ? ?
disulf3 disulf ? ? B CYS 6 SG ? ? ? 1_555 B CYS 15 SG ? ? B CYS 6 B CYS 15 1_555 ? ? ? ? ? ? ? 2.035 ? ?
disulf4 disulf ? ? B CYS 8 SG ? ? ? 1_555 B CYS 13 SG ? ? B CYS 8 B CYS 13 1_555 ? ? ? ? ? ? ? 2.044 ? ?
covale1 covale both ? A ARG 18 C ? ? ? 1_555 A NH2 19 N ? ? A ARG 18 A NH2 19 1_555 ? ? ? ? ? ? ? 1.320 ? ?
covale2 covale both ? B ARG 18 C ? ? ? 1_555 B NH2 19 N ? ? B ARG 18 B NH2 19 1_555 ? ? ? ? ? ? ? 1.319 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
disulf ? ?
covale ? ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 NH2 A 19 ? ARG A 18 ? NH2 A 19 ? 1_555 ARG A 18 ? 1_555 . . ARG 8 NH2 None 'Terminal amidation'
2 NH2 B 19 ? ARG B 18 ? NH2 B 19 ? 1_555 ARG B 18 ? 1_555 . . ARG 8 NH2 None 'Terminal amidation'
3 CYS A 6 ? CYS A 15 ? CYS A 6 ? 1_555 CYS A 15 ? 1_555 SG SG . . . None 'Disulfide bridge'
4 CYS A 8 ? CYS A 13 ? CYS A 8 ? 1_555 CYS A 13 ? 1_555 SG SG . . . None 'Disulfide bridge'
5 CYS B 6 ? CYS B 15 ? CYS B 6 ? 1_555 CYS B 15 ? 1_555 SG SG . . . None 'Disulfide bridge'
6 CYS B 8 ? CYS B 13 ? CYS B 8 ? 1_555 CYS B 13 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
_struct_sheet.id A
_struct_sheet.type ?
_struct_sheet.number_strands 4
_struct_sheet.details ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? parallel
A 3 4 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 LEU A 5 ? ARG A 9 ? LEU A 5 ARG A 9
A 2 PHE A 12 ? VAL A 16 ? PHE A 12 VAL A 16
A 3 PHE B 12 ? VAL B 16 ? PHE B 12 VAL B 16
A 4 LEU B 5 ? CYS B 8 ? LEU B 5 CYS B 8
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N ARG A 9 ? N ARG A 9 O PHE A 12 ? O PHE A 12
A 2 3 N CYS A 15 ? N CYS A 15 O CYS B 15 ? O CYS B 15
A 3 4 O VAL B 14 ? O VAL B 14 N TYR B 7 ? N TYR B 7
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A NH2 19 ? 2 'BINDING SITE FOR RESIDUE NH2 A 19'
AC2 Software B NH2 19 ? 2 'BINDING SITE FOR RESIDUE NH2 B 19'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 2 GLY A 2 ? GLY A 2 . ? 1_555 ?
2 AC1 2 ARG A 18 ? ARG A 18 . ? 1_555 ?
3 AC2 2 GLY B 2 ? GLY B 2 . ? 1_555 ?
4 AC2 2 ARG B 18 ? ARG B 18 . ? 1_555 ?
#
_pdbx_entry_details.entry_id 1ZY6
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 ARG A 10 ? ? 64.69 -111.64
2 1 ARG B 10 ? ? 61.62 -133.73
3 1 PHE B 12 ? ? -160.59 110.63
#
_pdbx_nmr_ensemble.entry_id 1ZY6
_pdbx_nmr_ensemble.conformers_calculated_total_number 100
_pdbx_nmr_ensemble.conformers_submitted_total_number 1
_pdbx_nmr_ensemble.conformer_selection_criteria 'least violations'
_pdbx_nmr_ensemble.average_constraints_per_residue ?
_pdbx_nmr_ensemble.average_constraint_violations_per_residue ?
_pdbx_nmr_ensemble.maximum_distance_constraint_violation ?
_pdbx_nmr_ensemble.average_distance_constraint_violation ?
_pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ?
_pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ?
_pdbx_nmr_ensemble.distance_constraint_violation_method ?
_pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ?
_pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ?
_pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ?
#
loop_
_pdbx_nmr_sample_details.solution_id
_pdbx_nmr_sample_details.contents
_pdbx_nmr_sample_details.solvent_system
1 '1:1 molar mixture of [13C-Cys15] PG-1 and [15N-Cys15] PG-1' 'POPC bilayers at a peptide-lipid molar ratio of 1:20'
2 '[4-19F-Phe12, 13C-Val16] PG-1' 'POPC bilayers at a peptide-lipid molar ratio of 1:12.5'
#
_pdbx_nmr_exptl_sample_conditions.conditions_id 1
_pdbx_nmr_exptl_sample_conditions.temperature 233
_pdbx_nmr_exptl_sample_conditions.pressure ambient
_pdbx_nmr_exptl_sample_conditions.pH ?
_pdbx_nmr_exptl_sample_conditions.ionic_strength ?
_pdbx_nmr_exptl_sample_conditions.pressure_units .
_pdbx_nmr_exptl_sample_conditions.temperature_units K
#
loop_
_pdbx_nmr_exptl.experiment_id
_pdbx_nmr_exptl.conditions_id
_pdbx_nmr_exptl.type
_pdbx_nmr_exptl.solution_id
1 1 'rotational-echo double resonance (REDOR) NMR technique, which measures distances between heteronuclear spins' 1
2 1 'rotational-echo double resonance (REDOR) NMR technique, which measures distances between heteronuclear spins' 2
#
_pdbx_nmr_details.entry_id 1ZY6
_pdbx_nmr_details.text
;Solid State NMR was performed at 400.49 MHz for 1H, 376.8 MHz for 19F, 100.72 MHz for 13C, and 40.58 MHz for 15N. The 15N{13C} and 13C{1H} REDOR experiments were carried out on a 1H/13C/15N triple resonance MAS probe. Spinning speeds were regulated to 3 Hz using a pneumatic control unit. 13C and 15N chemical shifts were referenced externally to the 13C signal of alpha-Gly at 176.4 ppm on the TMS scale and the 15N signal of N-acetyl-valine at 122 ppm, respectively. The 13C{19F} REDOR experiments, where the nucleus in the bracket is the unobserved dephasing spin, was conducted on a 4-mm magic-angle spinning (MAS) probe equipped with a Bruker HFX unit, which allows simultaneous tuning of 1H and 19F on the 1H channel.
;
#
_pdbx_nmr_refine.entry_id 1ZY6
_pdbx_nmr_refine.method 'Distance geometry; Simulated annealing'
_pdbx_nmr_refine.details
;Two-spin REDOR curves were simulated using a Fortran program. Three-spin REDOR curves for the C -F experiment were simulated using the SIMPSON program. The input distances and angles in the three-spin simulation were obtained from model building. The simulations assumed delta-function pulses for all pi pulses. Models that were potentially consistent with all the experimentally measured distances were created using MODELLER. In addition to the REDOR-based restraints, the input file included a restraint to preserve the intramolecular hydrogen bond ladder of each monomer, and a restraint to maintain monomer symmetry.
;
_pdbx_nmr_refine.software_ordinal 1
#
loop_
_pdbx_nmr_software.classification
_pdbx_nmr_software.name
_pdbx_nmr_software.version
_pdbx_nmr_software.authors
_pdbx_nmr_software.ordinal
'structure solution' SIMPSON ? 'Bak, Rasmussen, Nielsen' 1
refinement MODELLER 6.1 'Sali, Blundell' 2
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ARG N N N N 1
ARG CA C N S 2
ARG C C N N 3
ARG O O N N 4
ARG CB C N N 5
ARG CG C N N 6
ARG CD C N N 7
ARG NE N N N 8
ARG CZ C N N 9
ARG NH1 N N N 10
ARG NH2 N N N 11
ARG OXT O N N 12
ARG H H N N 13
ARG H2 H N N 14
ARG HA H N N 15
ARG HB2 H N N 16
ARG HB3 H N N 17
ARG HG2 H N N 18
ARG HG3 H N N 19
ARG HD2 H N N 20
ARG HD3 H N N 21
ARG HE H N N 22
ARG HH11 H N N 23
ARG HH12 H N N 24
ARG HH21 H N N 25
ARG HH22 H N N 26
ARG HXT H N N 27
CYS N N N N 28
CYS CA C N R 29
CYS C C N N 30
CYS O O N N 31
CYS CB C N N 32
CYS SG S N N 33
CYS OXT O N N 34
CYS H H N N 35
CYS H2 H N N 36
CYS HA H N N 37
CYS HB2 H N N 38
CYS HB3 H N N 39
CYS HG H N N 40
CYS HXT H N N 41
GLY N N N N 42
GLY CA C N N 43
GLY C C N N 44
GLY O O N N 45
GLY OXT O N N 46
GLY H H N N 47
GLY H2 H N N 48
GLY HA2 H N N 49
GLY HA3 H N N 50
GLY HXT H N N 51
LEU N N N N 52
LEU CA C N S 53
LEU C C N N 54
LEU O O N N 55
LEU CB C N N 56
LEU CG C N N 57
LEU CD1 C N N 58
LEU CD2 C N N 59
LEU OXT O N N 60
LEU H H N N 61
LEU H2 H N N 62
LEU HA H N N 63
LEU HB2 H N N 64
LEU HB3 H N N 65
LEU HG H N N 66
LEU HD11 H N N 67
LEU HD12 H N N 68
LEU HD13 H N N 69
LEU HD21 H N N 70
LEU HD22 H N N 71
LEU HD23 H N N 72
LEU HXT H N N 73
NH2 N N N N 74
NH2 HN1 H N N 75
NH2 HN2 H N N 76
PHE N N N N 77
PHE CA C N S 78
PHE C C N N 79
PHE O O N N 80
PHE CB C N N 81
PHE CG C Y N 82
PHE CD1 C Y N 83
PHE CD2 C Y N 84
PHE CE1 C Y N 85
PHE CE2 C Y N 86
PHE CZ C Y N 87
PHE OXT O N N 88
PHE H H N N 89
PHE H2 H N N 90
PHE HA H N N 91
PHE HB2 H N N 92
PHE HB3 H N N 93
PHE HD1 H N N 94
PHE HD2 H N N 95
PHE HE1 H N N 96
PHE HE2 H N N 97
PHE HZ H N N 98
PHE HXT H N N 99
TYR N N N N 100
TYR CA C N S 101
TYR C C N N 102
TYR O O N N 103
TYR CB C N N 104
TYR CG C Y N 105
TYR CD1 C Y N 106
TYR CD2 C Y N 107
TYR CE1 C Y N 108
TYR CE2 C Y N 109
TYR CZ C Y N 110
TYR OH O N N 111
TYR OXT O N N 112
TYR H H N N 113
TYR H2 H N N 114
TYR HA H N N 115
TYR HB2 H N N 116
TYR HB3 H N N 117
TYR HD1 H N N 118
TYR HD2 H N N 119
TYR HE1 H N N 120
TYR HE2 H N N 121
TYR HH H N N 122
TYR HXT H N N 123
VAL N N N N 124
VAL CA C N S 125
VAL C C N N 126
VAL O O N N 127
VAL CB C N N 128
VAL CG1 C N N 129
VAL CG2 C N N 130
VAL OXT O N N 131
VAL H H N N 132
VAL H2 H N N 133
VAL HA H N N 134
VAL HB H N N 135
VAL HG11 H N N 136
VAL HG12 H N N 137
VAL HG13 H N N 138
VAL HG21 H N N 139
VAL HG22 H N N 140
VAL HG23 H N N 141
VAL HXT H N N 142
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ARG N CA sing N N 1
ARG N H sing N N 2
ARG N H2 sing N N 3
ARG CA C sing N N 4
ARG CA CB sing N N 5
ARG CA HA sing N N 6
ARG C O doub N N 7
ARG C OXT sing N N 8
ARG CB CG sing N N 9
ARG CB HB2 sing N N 10
ARG CB HB3 sing N N 11
ARG CG CD sing N N 12
ARG CG HG2 sing N N 13
ARG CG HG3 sing N N 14
ARG CD NE sing N N 15
ARG CD HD2 sing N N 16
ARG CD HD3 sing N N 17
ARG NE CZ sing N N 18
ARG NE HE sing N N 19
ARG CZ NH1 sing N N 20
ARG CZ NH2 doub N N 21
ARG NH1 HH11 sing N N 22
ARG NH1 HH12 sing N N 23
ARG NH2 HH21 sing N N 24
ARG NH2 HH22 sing N N 25
ARG OXT HXT sing N N 26
CYS N CA sing N N 27
CYS N H sing N N 28
CYS N H2 sing N N 29
CYS CA C sing N N 30
CYS CA CB sing N N 31
CYS CA HA sing N N 32
CYS C O doub N N 33
CYS C OXT sing N N 34
CYS CB SG sing N N 35
CYS CB HB2 sing N N 36
CYS CB HB3 sing N N 37
CYS SG HG sing N N 38
CYS OXT HXT sing N N 39
GLY N CA sing N N 40
GLY N H sing N N 41
GLY N H2 sing N N 42
GLY CA C sing N N 43
GLY CA HA2 sing N N 44
GLY CA HA3 sing N N 45
GLY C O doub N N 46
GLY C OXT sing N N 47
GLY OXT HXT sing N N 48
LEU N CA sing N N 49
LEU N H sing N N 50
LEU N H2 sing N N 51
LEU CA C sing N N 52
LEU CA CB sing N N 53
LEU CA HA sing N N 54
LEU C O doub N N 55
LEU C OXT sing N N 56
LEU CB CG sing N N 57
LEU CB HB2 sing N N 58
LEU CB HB3 sing N N 59
LEU CG CD1 sing N N 60
LEU CG CD2 sing N N 61
LEU CG HG sing N N 62
LEU CD1 HD11 sing N N 63
LEU CD1 HD12 sing N N 64
LEU CD1 HD13 sing N N 65
LEU CD2 HD21 sing N N 66
LEU CD2 HD22 sing N N 67
LEU CD2 HD23 sing N N 68
LEU OXT HXT sing N N 69
NH2 N HN1 sing N N 70
NH2 N HN2 sing N N 71
PHE N CA sing N N 72
PHE N H sing N N 73
PHE N H2 sing N N 74
PHE CA C sing N N 75
PHE CA CB sing N N 76
PHE CA HA sing N N 77
PHE C O doub N N 78
PHE C OXT sing N N 79
PHE CB CG sing N N 80
PHE CB HB2 sing N N 81
PHE CB HB3 sing N N 82
PHE CG CD1 doub Y N 83
PHE CG CD2 sing Y N 84
PHE CD1 CE1 sing Y N 85
PHE CD1 HD1 sing N N 86
PHE CD2 CE2 doub Y N 87
PHE CD2 HD2 sing N N 88
PHE CE1 CZ doub Y N 89
PHE CE1 HE1 sing N N 90
PHE CE2 CZ sing Y N 91
PHE CE2 HE2 sing N N 92
PHE CZ HZ sing N N 93
PHE OXT HXT sing N N 94
TYR N CA sing N N 95
TYR N H sing N N 96
TYR N H2 sing N N 97
TYR CA C sing N N 98
TYR CA CB sing N N 99
TYR CA HA sing N N 100
TYR C O doub N N 101
TYR C OXT sing N N 102
TYR CB CG sing N N 103
TYR CB HB2 sing N N 104
TYR CB HB3 sing N N 105
TYR CG CD1 doub Y N 106
TYR CG CD2 sing Y N 107
TYR CD1 CE1 sing Y N 108
TYR CD1 HD1 sing N N 109
TYR CD2 CE2 doub Y N 110
TYR CD2 HD2 sing N N 111
TYR CE1 CZ doub Y N 112
TYR CE1 HE1 sing N N 113
TYR CE2 CZ sing Y N 114
TYR CE2 HE2 sing N N 115
TYR CZ OH sing N N 116
TYR OH HH sing N N 117
TYR OXT HXT sing N N 118
VAL N CA sing N N 119
VAL N H sing N N 120
VAL N H2 sing N N 121
VAL CA C sing N N 122
VAL CA CB sing N N 123
VAL CA HA sing N N 124
VAL C O doub N N 125
VAL C OXT sing N N 126
VAL CB CG1 sing N N 127
VAL CB CG2 sing N N 128
VAL CB HB sing N N 129
VAL CG1 HG11 sing N N 130
VAL CG1 HG12 sing N N 131
VAL CG1 HG13 sing N N 132
VAL CG2 HG21 sing N N 133
VAL CG2 HG22 sing N N 134
VAL CG2 HG23 sing N N 135
VAL OXT HXT sing N N 136
#
_pdbx_nmr_spectrometer.spectrometer_id 1
_pdbx_nmr_spectrometer.model 'DSX 400'
_pdbx_nmr_spectrometer.manufacturer Bruker
_pdbx_nmr_spectrometer.field_strength 400
_pdbx_nmr_spectrometer.type ?
#
_atom_sites.entry_id 1ZY6
_atom_sites.fract_transf_matrix[1][1] 1.000000
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 1.000000
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 1.000000
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
H
N
O
S
#
loop_