data_1ZY6 # _entry.id 1ZY6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ZY6 pdb_00001zy6 10.2210/pdb1zy6/pdb RCSB RCSB033257 ? ? WWPDB D_1000033257 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-13 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2024-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' pdbx_entry_details 10 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ZY6 _pdbx_database_status.recvd_initial_deposition_date 2005-06-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1PG1 _pdbx_database_related.details 'Solution structure of protegrin-1, a broad-spectrum antimicrobial peptide from porcine leukocytes.' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wu, X.' 1 'Mani, R.' 2 'Tang, M.' 3 'Buffy, J.J.' 4 'Waring, A.J.' 5 'Sherman, M.A.' 6 'Hong, M.' 7 # _citation.id primary _citation.title 'Membrane-Bound Dimer Structure of a beta-Hairpin Antimicrobial Peptide from Rotational-Echo Double-Resonance Solid-State NMR.' _citation.journal_abbrev Biochemistry _citation.journal_volume 45 _citation.page_first 8341 _citation.page_last 8349 _citation.year 2006 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16819833 _citation.pdbx_database_id_DOI 10.1021/bi060305b # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mani, R.' 1 ? primary 'Tang, M.' 2 ? primary 'Wu, X.' 3 ? primary 'Buffy, J.J.' 4 ? primary 'Waring, A.J.' 5 ? primary 'Sherman, M.A.' 6 ? primary 'Hong, M.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Protegrin 1' _entity.formula_weight 2164.679 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PG-1, Neutrophil peptide 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'RGGRLCYCRRRFCVCVGR(NH2)' _entity_poly.pdbx_seq_one_letter_code_can RGGRLCYCRRRFCVCVGRX _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 GLY n 1 3 GLY n 1 4 ARG n 1 5 LEU n 1 6 CYS n 1 7 TYR n 1 8 CYS n 1 9 ARG n 1 10 ARG n 1 11 ARG n 1 12 PHE n 1 13 CYS n 1 14 VAL n 1 15 CYS n 1 16 VAL n 1 17 GLY n 1 18 ARG n 1 19 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'BIOLOGICAL SEQUENCE WITH AMIDATED C-TERMINUS' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 1 1 ARG ARG A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 ARG 4 4 4 ARG ARG A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 CYS 8 8 8 CYS CYS A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 CYS 13 13 13 CYS CYS A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 CYS 15 15 15 CYS CYS A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 NH2 19 19 19 NH2 NH2 A . n B 1 1 ARG 1 1 1 ARG ARG B . n B 1 2 GLY 2 2 2 GLY GLY B . n B 1 3 GLY 3 3 3 GLY GLY B . n B 1 4 ARG 4 4 4 ARG ARG B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 CYS 6 6 6 CYS CYS B . n B 1 7 TYR 7 7 7 TYR TYR B . n B 1 8 CYS 8 8 8 CYS CYS B . n B 1 9 ARG 9 9 9 ARG ARG B . n B 1 10 ARG 10 10 10 ARG ARG B . n B 1 11 ARG 11 11 11 ARG ARG B . n B 1 12 PHE 12 12 12 PHE PHE B . n B 1 13 CYS 13 13 13 CYS CYS B . n B 1 14 VAL 14 14 14 VAL VAL B . n B 1 15 CYS 15 15 15 CYS CYS B . n B 1 16 VAL 16 16 16 VAL VAL B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 ARG 18 18 18 ARG ARG B . n B 1 19 NH2 19 19 19 NH2 NH2 B . n # _exptl.entry_id 1ZY6 _exptl.method 'SOLID-STATE NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1ZY6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1ZY6 _struct.title ;Membrane-bound dimer structure of Protegrin-1 (PG-1), a beta-Hairpin Antimicrobial Peptide in Lipid Bilayers from Rotational-Echo Double-Resonance Solid-State NMR ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ZY6 _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'beta-hairpin, solid state NMR, ANTIBIOTIC' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PG1_PIG _struct_ref.pdbx_db_accession P32194 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code RGGRLCYCRRRFCVCVGR _struct_ref.pdbx_align_begin 131 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ZY6 A 1 ? 18 ? P32194 131 ? 148 ? 1 18 2 1 1ZY6 B 1 ? 18 ? P32194 131 ? 148 ? 1 18 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1ZY6 NH2 A 19 ? UNP P32194 ? ? amidation 19 1 2 1ZY6 NH2 B 19 ? UNP P32194 ? ? amidation 19 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 15 SG ? ? A CYS 6 A CYS 15 1_555 ? ? ? ? ? ? ? 2.047 ? ? disulf2 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 13 SG ? ? A CYS 8 A CYS 13 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf3 disulf ? ? B CYS 6 SG ? ? ? 1_555 B CYS 15 SG ? ? B CYS 6 B CYS 15 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf4 disulf ? ? B CYS 8 SG ? ? ? 1_555 B CYS 13 SG ? ? B CYS 8 B CYS 13 1_555 ? ? ? ? ? ? ? 2.044 ? ? covale1 covale both ? A ARG 18 C ? ? ? 1_555 A NH2 19 N ? ? A ARG 18 A NH2 19 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale2 covale both ? B ARG 18 C ? ? ? 1_555 B NH2 19 N ? ? B ARG 18 B NH2 19 1_555 ? ? ? ? ? ? ? 1.319 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NH2 A 19 ? ARG A 18 ? NH2 A 19 ? 1_555 ARG A 18 ? 1_555 . . ARG 8 NH2 None 'Terminal amidation' 2 NH2 B 19 ? ARG B 18 ? NH2 B 19 ? 1_555 ARG B 18 ? 1_555 . . ARG 8 NH2 None 'Terminal amidation' 3 CYS A 6 ? CYS A 15 ? CYS A 6 ? 1_555 CYS A 15 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 8 ? CYS A 13 ? CYS A 8 ? 1_555 CYS A 13 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS B 6 ? CYS B 15 ? CYS B 6 ? 1_555 CYS B 15 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS B 8 ? CYS B 13 ? CYS B 8 ? 1_555 CYS B 13 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 5 ? ARG A 9 ? LEU A 5 ARG A 9 A 2 PHE A 12 ? VAL A 16 ? PHE A 12 VAL A 16 A 3 PHE B 12 ? VAL B 16 ? PHE B 12 VAL B 16 A 4 LEU B 5 ? CYS B 8 ? LEU B 5 CYS B 8 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 9 ? N ARG A 9 O PHE A 12 ? O PHE A 12 A 2 3 N CYS A 15 ? N CYS A 15 O CYS B 15 ? O CYS B 15 A 3 4 O VAL B 14 ? O VAL B 14 N TYR B 7 ? N TYR B 7 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NH2 19 ? 2 'BINDING SITE FOR RESIDUE NH2 A 19' AC2 Software B NH2 19 ? 2 'BINDING SITE FOR RESIDUE NH2 B 19' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 GLY A 2 ? GLY A 2 . ? 1_555 ? 2 AC1 2 ARG A 18 ? ARG A 18 . ? 1_555 ? 3 AC2 2 GLY B 2 ? GLY B 2 . ? 1_555 ? 4 AC2 2 ARG B 18 ? ARG B 18 . ? 1_555 ? # _pdbx_entry_details.entry_id 1ZY6 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 10 ? ? 64.69 -111.64 2 1 ARG B 10 ? ? 61.62 -133.73 3 1 PHE B 12 ? ? -160.59 110.63 # _pdbx_nmr_ensemble.entry_id 1ZY6 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'least violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1:1 molar mixture of [13C-Cys15] PG-1 and [15N-Cys15] PG-1' 'POPC bilayers at a peptide-lipid molar ratio of 1:20' 2 '[4-19F-Phe12, 13C-Val16] PG-1' 'POPC bilayers at a peptide-lipid molar ratio of 1:12.5' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 233 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH ? _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 'rotational-echo double resonance (REDOR) NMR technique, which measures distances between heteronuclear spins' 1 2 1 'rotational-echo double resonance (REDOR) NMR technique, which measures distances between heteronuclear spins' 2 # _pdbx_nmr_details.entry_id 1ZY6 _pdbx_nmr_details.text ;Solid State NMR was performed at 400.49 MHz for 1H, 376.8 MHz for 19F, 100.72 MHz for 13C, and 40.58 MHz for 15N. The 15N{13C} and 13C{1H} REDOR experiments were carried out on a 1H/13C/15N triple resonance MAS probe. Spinning speeds were regulated to 3 Hz using a pneumatic control unit. 13C and 15N chemical shifts were referenced externally to the 13C signal of alpha-Gly at 176.4 ppm on the TMS scale and the 15N signal of N-acetyl-valine at 122 ppm, respectively. The 13C{19F} REDOR experiments, where the nucleus in the bracket is the unobserved dephasing spin, was conducted on a 4-mm magic-angle spinning (MAS) probe equipped with a Bruker HFX unit, which allows simultaneous tuning of 1H and 19F on the 1H channel. ; # _pdbx_nmr_refine.entry_id 1ZY6 _pdbx_nmr_refine.method 'Distance geometry; Simulated annealing' _pdbx_nmr_refine.details ;Two-spin REDOR curves were simulated using a Fortran program. Three-spin REDOR curves for the C -F experiment were simulated using the SIMPSON program. The input distances and angles in the three-spin simulation were obtained from model building. The simulations assumed delta-function pulses for all pi pulses. Models that were potentially consistent with all the experimentally measured distances were created using MODELLER. In addition to the REDOR-based restraints, the input file included a restraint to preserve the intramolecular hydrogen bond ladder of each monomer, and a restraint to maintain monomer symmetry. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal 'structure solution' SIMPSON ? 'Bak, Rasmussen, Nielsen' 1 refinement MODELLER 6.1 'Sali, Blundell' 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 CYS N N N N 28 CYS CA C N R 29 CYS C C N N 30 CYS O O N N 31 CYS CB C N N 32 CYS SG S N N 33 CYS OXT O N N 34 CYS H H N N 35 CYS H2 H N N 36 CYS HA H N N 37 CYS HB2 H N N 38 CYS HB3 H N N 39 CYS HG H N N 40 CYS HXT H N N 41 GLY N N N N 42 GLY CA C N N 43 GLY C C N N 44 GLY O O N N 45 GLY OXT O N N 46 GLY H H N N 47 GLY H2 H N N 48 GLY HA2 H N N 49 GLY HA3 H N N 50 GLY HXT H N N 51 LEU N N N N 52 LEU CA C N S 53 LEU C C N N 54 LEU O O N N 55 LEU CB C N N 56 LEU CG C N N 57 LEU CD1 C N N 58 LEU CD2 C N N 59 LEU OXT O N N 60 LEU H H N N 61 LEU H2 H N N 62 LEU HA H N N 63 LEU HB2 H N N 64 LEU HB3 H N N 65 LEU HG H N N 66 LEU HD11 H N N 67 LEU HD12 H N N 68 LEU HD13 H N N 69 LEU HD21 H N N 70 LEU HD22 H N N 71 LEU HD23 H N N 72 LEU HXT H N N 73 NH2 N N N N 74 NH2 HN1 H N N 75 NH2 HN2 H N N 76 PHE N N N N 77 PHE CA C N S 78 PHE C C N N 79 PHE O O N N 80 PHE CB C N N 81 PHE CG C Y N 82 PHE CD1 C Y N 83 PHE CD2 C Y N 84 PHE CE1 C Y N 85 PHE CE2 C Y N 86 PHE CZ C Y N 87 PHE OXT O N N 88 PHE H H N N 89 PHE H2 H N N 90 PHE HA H N N 91 PHE HB2 H N N 92 PHE HB3 H N N 93 PHE HD1 H N N 94 PHE HD2 H N N 95 PHE HE1 H N N 96 PHE HE2 H N N 97 PHE HZ H N N 98 PHE HXT H N N 99 TYR N N N N 100 TYR CA C N S 101 TYR C C N N 102 TYR O O N N 103 TYR CB C N N 104 TYR CG C Y N 105 TYR CD1 C Y N 106 TYR CD2 C Y N 107 TYR CE1 C Y N 108 TYR CE2 C Y N 109 TYR CZ C Y N 110 TYR OH O N N 111 TYR OXT O N N 112 TYR H H N N 113 TYR H2 H N N 114 TYR HA H N N 115 TYR HB2 H N N 116 TYR HB3 H N N 117 TYR HD1 H N N 118 TYR HD2 H N N 119 TYR HE1 H N N 120 TYR HE2 H N N 121 TYR HH H N N 122 TYR HXT H N N 123 VAL N N N N 124 VAL CA C N S 125 VAL C C N N 126 VAL O O N N 127 VAL CB C N N 128 VAL CG1 C N N 129 VAL CG2 C N N 130 VAL OXT O N N 131 VAL H H N N 132 VAL H2 H N N 133 VAL HA H N N 134 VAL HB H N N 135 VAL HG11 H N N 136 VAL HG12 H N N 137 VAL HG13 H N N 138 VAL HG21 H N N 139 VAL HG22 H N N 140 VAL HG23 H N N 141 VAL HXT H N N 142 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 CYS N CA sing N N 27 CYS N H sing N N 28 CYS N H2 sing N N 29 CYS CA C sing N N 30 CYS CA CB sing N N 31 CYS CA HA sing N N 32 CYS C O doub N N 33 CYS C OXT sing N N 34 CYS CB SG sing N N 35 CYS CB HB2 sing N N 36 CYS CB HB3 sing N N 37 CYS SG HG sing N N 38 CYS OXT HXT sing N N 39 GLY N CA sing N N 40 GLY N H sing N N 41 GLY N H2 sing N N 42 GLY CA C sing N N 43 GLY CA HA2 sing N N 44 GLY CA HA3 sing N N 45 GLY C O doub N N 46 GLY C OXT sing N N 47 GLY OXT HXT sing N N 48 LEU N CA sing N N 49 LEU N H sing N N 50 LEU N H2 sing N N 51 LEU CA C sing N N 52 LEU CA CB sing N N 53 LEU CA HA sing N N 54 LEU C O doub N N 55 LEU C OXT sing N N 56 LEU CB CG sing N N 57 LEU CB HB2 sing N N 58 LEU CB HB3 sing N N 59 LEU CG CD1 sing N N 60 LEU CG CD2 sing N N 61 LEU CG HG sing N N 62 LEU CD1 HD11 sing N N 63 LEU CD1 HD12 sing N N 64 LEU CD1 HD13 sing N N 65 LEU CD2 HD21 sing N N 66 LEU CD2 HD22 sing N N 67 LEU CD2 HD23 sing N N 68 LEU OXT HXT sing N N 69 NH2 N HN1 sing N N 70 NH2 N HN2 sing N N 71 PHE N CA sing N N 72 PHE N H sing N N 73 PHE N H2 sing N N 74 PHE CA C sing N N 75 PHE CA CB sing N N 76 PHE CA HA sing N N 77 PHE C O doub N N 78 PHE C OXT sing N N 79 PHE CB CG sing N N 80 PHE CB HB2 sing N N 81 PHE CB HB3 sing N N 82 PHE CG CD1 doub Y N 83 PHE CG CD2 sing Y N 84 PHE CD1 CE1 sing Y N 85 PHE CD1 HD1 sing N N 86 PHE CD2 CE2 doub Y N 87 PHE CD2 HD2 sing N N 88 PHE CE1 CZ doub Y N 89 PHE CE1 HE1 sing N N 90 PHE CE2 CZ sing Y N 91 PHE CE2 HE2 sing N N 92 PHE CZ HZ sing N N 93 PHE OXT HXT sing N N 94 TYR N CA sing N N 95 TYR N H sing N N 96 TYR N H2 sing N N 97 TYR CA C sing N N 98 TYR CA CB sing N N 99 TYR CA HA sing N N 100 TYR C O doub N N 101 TYR C OXT sing N N 102 TYR CB CG sing N N 103 TYR CB HB2 sing N N 104 TYR CB HB3 sing N N 105 TYR CG CD1 doub Y N 106 TYR CG CD2 sing Y N 107 TYR CD1 CE1 sing Y N 108 TYR CD1 HD1 sing N N 109 TYR CD2 CE2 doub Y N 110 TYR CD2 HD2 sing N N 111 TYR CE1 CZ doub Y N 112 TYR CE1 HE1 sing N N 113 TYR CE2 CZ sing Y N 114 TYR CE2 HE2 sing N N 115 TYR CZ OH sing N N 116 TYR OH HH sing N N 117 TYR OXT HXT sing N N 118 VAL N CA sing N N 119 VAL N H sing N N 120 VAL N H2 sing N N 121 VAL CA C sing N N 122 VAL CA CB sing N N 123 VAL CA HA sing N N 124 VAL C O doub N N 125 VAL C OXT sing N N 126 VAL CB CG1 sing N N 127 VAL CB CG2 sing N N 128 VAL CB HB sing N N 129 VAL CG1 HG11 sing N N 130 VAL CG1 HG12 sing N N 131 VAL CG1 HG13 sing N N 132 VAL CG2 HG21 sing N N 133 VAL CG2 HG22 sing N N 134 VAL CG2 HG23 sing N N 135 VAL OXT HXT sing N N 136 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'DSX 400' _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 400 _pdbx_nmr_spectrometer.type ? # _atom_sites.entry_id 1ZY6 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_