data_1ZYB # _entry.id 1ZYB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ZYB pdb_00001zyb 10.2210/pdb1zyb/pdb RCSB RCSB033262 ? ? WWPDB D_1000033262 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 358851 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 1ZYB _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-06-09 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of transcription regulator from Bacteroides thetaiotaomicron VPI-5482 at 2.15 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.length_a 115.980 _cell.length_b 115.980 _cell.length_c 119.639 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 1ZYB _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.Int_Tables_number 179 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.entry_id 1ZYB _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'transcription regulator, CRP family' 27209.520 1 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 7 ? ? ? ? 3 water nat water 18.015 187 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHH(MSE)ET(MSE)FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLL KGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFG(MSE)NTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNY (MSE)NIVSNRAQNLYSRLWDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVK(MSE)DDLARCLDDTRLNISKTLNELQDN GLIELHRKEILIPDAQKLL ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKE NIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEP TLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDNGLIELHRKEILIPDAQKLL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 358851 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MSE n 1 14 GLU n 1 15 THR n 1 16 MSE n 1 17 PHE n 1 18 ASP n 1 19 THR n 1 20 LEU n 1 21 LEU n 1 22 GLN n 1 23 LEU n 1 24 PRO n 1 25 LEU n 1 26 PHE n 1 27 GLN n 1 28 GLY n 1 29 LEU n 1 30 CYS n 1 31 HIS n 1 32 GLU n 1 33 ASP n 1 34 PHE n 1 35 THR n 1 36 SER n 1 37 ILE n 1 38 LEU n 1 39 ASP n 1 40 LYS n 1 41 VAL n 1 42 LYS n 1 43 LEU n 1 44 HIS n 1 45 PHE n 1 46 ILE n 1 47 LYS n 1 48 HIS n 1 49 LYS n 1 50 ALA n 1 51 GLY n 1 52 GLU n 1 53 THR n 1 54 ILE n 1 55 ILE n 1 56 LYS n 1 57 SER n 1 58 GLY n 1 59 ASN n 1 60 PRO n 1 61 CYS n 1 62 THR n 1 63 GLN n 1 64 LEU n 1 65 CYS n 1 66 PHE n 1 67 LEU n 1 68 LEU n 1 69 LYS n 1 70 GLY n 1 71 GLU n 1 72 ILE n 1 73 SER n 1 74 ILE n 1 75 VAL n 1 76 THR n 1 77 ASN n 1 78 ALA n 1 79 LYS n 1 80 GLU n 1 81 ASN n 1 82 ILE n 1 83 TYR n 1 84 THR n 1 85 VAL n 1 86 ILE n 1 87 GLU n 1 88 GLN n 1 89 ILE n 1 90 GLU n 1 91 ALA n 1 92 PRO n 1 93 TYR n 1 94 LEU n 1 95 ILE n 1 96 GLU n 1 97 PRO n 1 98 GLN n 1 99 SER n 1 100 LEU n 1 101 PHE n 1 102 GLY n 1 103 MSE n 1 104 ASN n 1 105 THR n 1 106 ASN n 1 107 TYR n 1 108 ALA n 1 109 SER n 1 110 SER n 1 111 TYR n 1 112 VAL n 1 113 ALA n 1 114 HIS n 1 115 THR n 1 116 GLU n 1 117 VAL n 1 118 HIS n 1 119 THR n 1 120 VAL n 1 121 CYS n 1 122 ILE n 1 123 SER n 1 124 LYS n 1 125 ALA n 1 126 PHE n 1 127 VAL n 1 128 LEU n 1 129 SER n 1 130 ASP n 1 131 LEU n 1 132 PHE n 1 133 ARG n 1 134 TYR n 1 135 ASP n 1 136 ILE n 1 137 PHE n 1 138 ARG n 1 139 LEU n 1 140 ASN n 1 141 TYR n 1 142 MSE n 1 143 ASN n 1 144 ILE n 1 145 VAL n 1 146 SER n 1 147 ASN n 1 148 ARG n 1 149 ALA n 1 150 GLN n 1 151 ASN n 1 152 LEU n 1 153 TYR n 1 154 SER n 1 155 ARG n 1 156 LEU n 1 157 TRP n 1 158 ASP n 1 159 GLU n 1 160 PRO n 1 161 THR n 1 162 LEU n 1 163 ASP n 1 164 LEU n 1 165 LYS n 1 166 SER n 1 167 LYS n 1 168 ILE n 1 169 ILE n 1 170 ARG n 1 171 PHE n 1 172 PHE n 1 173 LEU n 1 174 SER n 1 175 HIS n 1 176 CYS n 1 177 GLU n 1 178 LYS n 1 179 PRO n 1 180 GLN n 1 181 GLY n 1 182 GLU n 1 183 LYS n 1 184 THR n 1 185 PHE n 1 186 LYS n 1 187 VAL n 1 188 LYS n 1 189 MSE n 1 190 ASP n 1 191 ASP n 1 192 LEU n 1 193 ALA n 1 194 ARG n 1 195 CYS n 1 196 LEU n 1 197 ASP n 1 198 ASP n 1 199 THR n 1 200 ARG n 1 201 LEU n 1 202 ASN n 1 203 ILE n 1 204 SER n 1 205 LYS n 1 206 THR n 1 207 LEU n 1 208 ASN n 1 209 GLU n 1 210 LEU n 1 211 GLN n 1 212 ASP n 1 213 ASN n 1 214 GLY n 1 215 LEU n 1 216 ILE n 1 217 GLU n 1 218 LEU n 1 219 HIS n 1 220 ARG n 1 221 LYS n 1 222 GLU n 1 223 ILE n 1 224 LEU n 1 225 ILE n 1 226 PRO n 1 227 ASP n 1 228 ALA n 1 229 GLN n 1 230 LYS n 1 231 LEU n 1 232 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacteroides _entity_src_gen.pdbx_gene_src_gene np_813211.1 _entity_src_gen.gene_src_species 'Bacteroides thetaiotaomicron' _entity_src_gen.gene_src_strain VPI-5482 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides thetaiotaomicron' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 226186 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code NP_813211 _struct_ref.pdbx_db_accession 29349708 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;METMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAP YLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDLKSKIIRFF LSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDNGLIELHRKEILIPDAQKLL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1ZYB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 13 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 232 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 29349708 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 220 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 220 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1ZYB MSE A 1 ? GB 29349708 ? ? 'expression tag' -11 1 1 1ZYB GLY A 2 ? GB 29349708 ? ? 'expression tag' -10 2 1 1ZYB SER A 3 ? GB 29349708 ? ? 'expression tag' -9 3 1 1ZYB ASP A 4 ? GB 29349708 ? ? 'expression tag' -8 4 1 1ZYB LYS A 5 ? GB 29349708 ? ? 'expression tag' -7 5 1 1ZYB ILE A 6 ? GB 29349708 ? ? 'expression tag' -6 6 1 1ZYB HIS A 7 ? GB 29349708 ? ? 'expression tag' -5 7 1 1ZYB HIS A 8 ? GB 29349708 ? ? 'expression tag' -4 8 1 1ZYB HIS A 9 ? GB 29349708 ? ? 'expression tag' -3 9 1 1ZYB HIS A 10 ? GB 29349708 ? ? 'expression tag' -2 10 1 1ZYB HIS A 11 ? GB 29349708 ? ? 'expression tag' -1 11 1 1ZYB HIS A 12 ? GB 29349708 ? ? 'expression tag' 0 12 1 1ZYB MSE A 13 ? GB 29349708 MET 1 'modified residue' 1 13 1 1ZYB MSE A 16 ? GB 29349708 MET 4 'modified residue' 4 14 1 1ZYB MSE A 103 ? GB 29349708 MET 91 'modified residue' 91 15 1 1ZYB MSE A 142 ? GB 29349708 MET 130 'modified residue' 130 16 1 1ZYB MSE A 189 ? GB 29349708 MET 177 'modified residue' 177 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 1ZYB # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 67.86 _exptl_crystal.density_Matthews 3.86 _exptl_crystal.description ? _exptl_crystal.density_meas ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 273 _exptl_crystal_grow.pdbx_details '4.0M NaFormate, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 273K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.details 'Double-crystal monochromator (Si 111), toroid' _diffrn_detector.pdbx_collection_date 2005-05-05 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.979094 1.0 2 0.918381 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL1-5 _diffrn_source.type 'SSRL BEAMLINE BL1-5' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.979094, 0.918381' _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 1ZYB _reflns.d_resolution_low 29.91 _reflns.d_resolution_high 2.10 _reflns.number_obs 28282 _reflns.percent_possible_obs 99.900 _reflns.pdbx_Rmerge_I_obs 0.088 _reflns.pdbx_chi_squared ? _reflns.pdbx_redundancy 6.800 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI 6.400 _reflns.pdbx_Rsym_value 0.088 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_low _reflns_shell.d_res_high _reflns_shell.number_measured_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.number_unique_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.percent_possible_all _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.15 2.10 2027 98.800 0.766 ? 4.200 ? 1.000 0.766 ? ? ? 1 1 2.21 2.15 1986 100.000 0.649 ? 5.000 ? 1.200 0.649 ? ? ? 2 1 2.28 2.21 1951 100.000 0.617 ? 6.300 ? 1.200 0.617 ? ? ? 3 1 2.35 2.28 1904 100.000 0.517 ? 7.400 ? 1.500 0.517 ? ? ? 4 1 2.42 2.35 1823 100.000 0.404 ? 7.300 ? 1.900 0.404 ? ? ? 5 1 2.51 2.42 1797 100.000 0.315 ? 7.300 ? 2.400 0.315 ? ? ? 6 1 2.60 2.51 1724 100.000 0.263 ? 7.300 ? 2.900 0.263 ? ? ? 7 1 2.71 2.60 1642 100.000 0.204 ? 7.300 ? 3.700 0.204 ? ? ? 8 1 2.83 2.71 1603 100.000 0.162 ? 7.300 ? 4.700 0.162 ? ? ? 9 1 2.97 2.83 1531 100.000 0.123 ? 7.300 ? 6.100 0.123 ? ? ? 10 1 3.13 2.97 1467 100.000 0.099 ? 7.200 ? 7.200 0.099 ? ? ? 11 1 3.32 3.13 1380 100.000 0.085 ? 7.200 ? 7.900 0.085 ? ? ? 12 1 3.55 3.32 1311 100.000 0.073 ? 7.200 ? 8.900 0.073 ? ? ? 13 1 3.83 3.55 1220 100.000 0.064 ? 7.100 ? 9.400 0.064 ? ? ? 14 1 4.20 3.83 1133 100.000 0.058 ? 7.100 ? 10.600 0.058 ? ? ? 15 1 4.70 4.20 1038 100.000 0.052 ? 7.000 ? 11.200 0.052 ? ? ? 16 1 5.42 4.70 936 100.000 0.049 ? 6.900 ? 12.200 0.049 ? ? ? 17 1 6.64 5.42 797 100.000 0.052 ? 6.800 ? 10.300 0.052 ? ? ? 18 1 9.39 6.64 637 99.800 0.037 ? 6.400 ? 14.400 0.037 ? ? ? 19 1 29.91 9.39 375 96.000 0.032 ? 5.600 ? 16.300 0.032 ? ? ? 20 1 # _refine.ls_d_res_high 2.150 _refine.ls_d_res_low 29.2 _refine.ls_percent_reflns_obs 99.870 _refine.ls_number_reflns_obs 25047 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_all 0.18 _refine.ls_R_factor_R_work 0.177 _refine.ls_R_factor_R_free 0.228 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1332 _refine.B_iso_mean 38.566 _refine.aniso_B[1][1] -1.330 _refine.aniso_B[2][2] -1.330 _refine.aniso_B[3][3] 1.990 _refine.aniso_B[1][2] -0.660 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.939 _refine.pdbx_overall_ESU_R 0.140 _refine.pdbx_overall_ESU_R_Free 0.146 _refine.overall_SU_ML 0.111 _refine.overall_SU_B 8.237 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_method_to_determine_struct MAD _refine.entry_id 1ZYB _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.7 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. THERE EXISTS A PARTIAL DISULFIDE BOND BETWEEN CYS 53 AND CYS 109. ; _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1863 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 187 _refine_hist.number_atoms_total 2092 _refine_hist.d_res_high 2.150 _refine_hist.d_res_low 29.2 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2000 0.016 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1825 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2700 1.406 1.966 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 4272 0.781 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 229 5.560 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 98 35.444 24.796 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 369 12.987 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 15.613 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 312 0.084 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2116 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 379 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 377 0.210 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1741 0.173 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 945 0.181 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 1223 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 142 0.143 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 20 0.179 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 103 0.240 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 15 0.232 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1262 2.395 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 462 0.529 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1914 3.226 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 897 5.604 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 786 7.474 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.150 _refine_ls_shell.d_res_low 2.206 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 1808 _refine_ls_shell.R_factor_R_work 0.229 _refine_ls_shell.R_factor_R_free 0.295 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 97 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 1ZYB _struct.title 'Crystal structure of transcription regulator from Bacteroides thetaiotaomicron VPI-5482 at 2.15 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;np_813211.1, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, TRANSCRIPTION REGULATOR ; _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR' _struct_keywords.entry_id 1ZYB # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 8 ? ASP A 18 ? HIS A -4 ASP A 6 1 ? 11 HELX_P HELX_P2 2 THR A 19 ? GLN A 27 ? THR A 7 GLN A 15 5 ? 9 HELX_P HELX_P3 3 CYS A 30 ? LYS A 40 ? CYS A 18 LYS A 28 1 ? 11 HELX_P HELX_P4 4 LYS A 79 ? ILE A 82 ? LYS A 67 ILE A 70 5 ? 4 HELX_P HELX_P5 5 GLU A 96 ? PHE A 101 ? GLU A 84 PHE A 89 5 ? 6 HELX_P HELX_P6 6 LYS A 124 ? ASP A 130 ? LYS A 112 ASP A 118 1 ? 7 HELX_P HELX_P7 7 LEU A 131 ? ARG A 133 ? LEU A 119 ARG A 121 5 ? 3 HELX_P HELX_P8 8 TYR A 134 ? LEU A 156 ? TYR A 122 LEU A 144 1 ? 23 HELX_P HELX_P9 9 ASP A 163 ? SER A 174 ? ASP A 151 SER A 162 1 ? 12 HELX_P HELX_P10 10 LYS A 188 ? ASP A 197 ? LYS A 176 ASP A 185 1 ? 10 HELX_P HELX_P11 11 THR A 199 ? ASN A 213 ? THR A 187 ASN A 201 1 ? 15 HELX_P HELX_P12 12 ASP A 227 ? LEU A 232 ? ASP A 215 LEU A 220 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 65 SG B ? ? 1_555 A CYS 121 SG B ? A CYS 53 A CYS 109 1_555 ? ? ? ? ? ? ? 2.055 ? ? covale1 covale both ? A HIS 12 C ? ? ? 1_555 A MSE 13 N ? ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale2 covale both ? A MSE 13 C ? ? ? 1_555 A GLU 14 N ? ? A MSE 1 A GLU 2 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale3 covale both ? A THR 15 C ? ? ? 1_555 A MSE 16 N ? ? A THR 3 A MSE 4 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale4 covale both ? A MSE 16 C ? ? ? 1_555 A PHE 17 N ? ? A MSE 4 A PHE 5 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale5 covale both ? A GLY 102 C ? ? ? 1_555 A MSE 103 N ? ? A GLY 90 A MSE 91 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale6 covale both ? A MSE 103 C ? ? ? 1_555 A ASN 104 N ? ? A MSE 91 A ASN 92 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale7 covale both ? A TYR 141 C ? ? ? 1_555 A MSE 142 N ? ? A TYR 129 A MSE 130 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale8 covale both ? A MSE 142 C ? ? ? 1_555 A ASN 143 N ? ? A MSE 130 A ASN 131 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale9 covale both ? A LYS 188 C ? ? ? 1_555 A MSE 189 N ? ? A LYS 176 A MSE 177 1_555 ? ? ? ? ? ? ? 1.307 ? ? covale10 covale both ? A MSE 189 C ? ? ? 1_555 A ASP 190 N ? ? A MSE 177 A ASP 178 1_555 ? ? ? ? ? ? ? 1.332 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 91 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 79 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 92 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 80 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -5.17 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 44 ? HIS A 48 ? HIS A 32 HIS A 36 A 2 VAL A 117 ? SER A 123 ? VAL A 105 SER A 111 A 3 GLN A 63 ? LYS A 69 ? GLN A 51 LYS A 57 A 4 TYR A 93 ? ILE A 95 ? TYR A 81 ILE A 83 B 1 THR A 53 ? ILE A 55 ? THR A 41 ILE A 43 B 2 SER A 110 ? ALA A 113 ? SER A 98 ALA A 101 B 3 GLU A 71 ? ASN A 77 ? GLU A 59 ASN A 65 B 4 THR A 84 ? GLU A 90 ? THR A 72 GLU A 78 B 5 LYS A 183 ? LYS A 186 ? LYS A 171 LYS A 174 B 6 GLU A 222 ? ILE A 225 ? GLU A 210 ILE A 213 B 7 GLU A 217 ? HIS A 219 ? GLU A 205 HIS A 207 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS A 48 ? N HIS A 36 O VAL A 117 ? O VAL A 105 A 2 3 O ILE A 122 ? O ILE A 110 N LEU A 64 ? N LEU A 52 A 3 4 N LEU A 67 ? N LEU A 55 O TYR A 93 ? O TYR A 81 B 1 2 N ILE A 55 ? N ILE A 43 O TYR A 111 ? O TYR A 99 B 2 3 O SER A 110 ? O SER A 98 N VAL A 75 ? N VAL A 63 B 3 4 N ILE A 74 ? N ILE A 62 O GLU A 87 ? O GLU A 75 B 4 5 N THR A 84 ? N THR A 72 O LYS A 186 ? O LYS A 174 B 5 6 N LYS A 183 ? N LYS A 171 O ILE A 225 ? O ILE A 213 B 6 7 O GLU A 222 ? O GLU A 210 N HIS A 219 ? N HIS A 207 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 221 ? 5 'BINDING SITE FOR RESIDUE GOL A 221' AC2 Software A GOL 222 ? 4 'BINDING SITE FOR RESIDUE GOL A 222' AC3 Software A GOL 223 ? 5 'BINDING SITE FOR RESIDUE GOL A 223' AC4 Software A GOL 224 ? 5 'BINDING SITE FOR RESIDUE GOL A 224' AC5 Software A GOL 225 ? 6 'BINDING SITE FOR RESIDUE GOL A 225' AC6 Software A GOL 226 ? 8 'BINDING SITE FOR RESIDUE GOL A 226' AC7 Software A GOL 227 ? 9 'BINDING SITE FOR RESIDUE GOL A 227' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 THR A 76 ? THR A 64 . ? 1_555 ? 2 AC1 5 ASN A 77 ? ASN A 65 . ? 1_555 ? 3 AC1 5 ALA A 108 ? ALA A 96 . ? 1_555 ? 4 AC1 5 TRP A 157 ? TRP A 145 . ? 12_564 ? 5 AC1 5 HOH I . ? HOH A 237 . ? 1_555 ? 6 AC2 4 HIS A 48 ? HIS A 36 . ? 1_555 ? 7 AC2 4 ILE A 54 ? ILE A 42 . ? 1_555 ? 8 AC2 4 ILE A 55 ? ILE A 43 . ? 1_555 ? 9 AC2 4 GLN A 63 ? GLN A 51 . ? 1_555 ? 10 AC3 5 HIS A 10 ? HIS A -2 . ? 1_555 ? 11 AC3 5 MSE A 13 ? MSE A 1 . ? 1_555 ? 12 AC3 5 GLU A 14 ? GLU A 2 . ? 1_555 ? 13 AC3 5 PHE A 17 ? PHE A 5 . ? 1_555 ? 14 AC3 5 HOH I . ? HOH A 379 . ? 1_555 ? 15 AC4 5 HIS A 11 ? HIS A -1 . ? 10_555 ? 16 AC4 5 LYS A 5 ? LYS A -7 . ? 1_555 ? 17 AC4 5 HIS A 12 ? HIS A 0 . ? 10_555 ? 18 AC4 5 THR A 15 ? THR A 3 . ? 10_555 ? 19 AC4 5 HOH I . ? HOH A 388 . ? 1_555 ? 20 AC5 6 VAL A 187 ? VAL A 175 . ? 1_555 ? 21 AC5 6 MSE A 189 ? MSE A 177 . ? 1_555 ? 22 AC5 6 HIS A 219 ? HIS A 207 . ? 1_555 ? 23 AC5 6 LYS A 221 ? LYS A 209 . ? 1_555 ? 24 AC5 6 GLU A 222 ? GLU A 210 . ? 1_555 ? 25 AC5 6 HOH I . ? HOH A 311 . ? 1_555 ? 26 AC6 8 PHE A 126 ? PHE A 114 . ? 5_555 ? 27 AC6 8 SER A 129 ? SER A 117 . ? 5_555 ? 28 AC6 8 ASP A 130 ? ASP A 118 . ? 5_555 ? 29 AC6 8 LEU A 218 ? LEU A 206 . ? 1_555 ? 30 AC6 8 HIS A 219 ? HIS A 207 . ? 1_555 ? 31 AC6 8 HOH I . ? HOH A 326 . ? 1_555 ? 32 AC6 8 HOH I . ? HOH A 372 . ? 1_555 ? 33 AC6 8 HOH I . ? HOH A 381 . ? 1_555 ? 34 AC7 9 ARG A 148 ? ARG A 136 . ? 1_555 ? 35 AC7 9 ASN A 151 ? ASN A 139 . ? 1_555 ? 36 AC7 9 LEU A 152 ? LEU A 140 . ? 1_555 ? 37 AC7 9 TYR A 153 ? TYR A 141 . ? 12_564 ? 38 AC7 9 ARG A 155 ? ARG A 143 . ? 1_555 ? 39 AC7 9 SER A 174 ? SER A 162 . ? 1_555 ? 40 AC7 9 CYS A 176 ? CYS A 164 . ? 1_555 ? 41 AC7 9 GLU A 177 ? GLU A 165 . ? 1_555 ? 42 AC7 9 HOH I . ? HOH A 354 . ? 1_555 ? # _atom_sites.entry_id 1ZYB _atom_sites.fract_transf_matrix[1][1] 0.00862 _atom_sites.fract_transf_matrix[1][2] 0.00498 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.00996 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.00836 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 -9 SER SER A . n A 1 4 ASP 4 -8 -8 ASP ASP A . n A 1 5 LYS 5 -7 -7 LYS LYS A . n A 1 6 ILE 6 -6 -6 ILE ILE A . n A 1 7 HIS 7 -5 -5 HIS HIS A . n A 1 8 HIS 8 -4 -4 HIS HIS A . n A 1 9 HIS 9 -3 -3 HIS HIS A . n A 1 10 HIS 10 -2 -2 HIS HIS A . n A 1 11 HIS 11 -1 -1 HIS HIS A . n A 1 12 HIS 12 0 0 HIS HIS A . n A 1 13 MSE 13 1 1 MSE MSE A . n A 1 14 GLU 14 2 2 GLU GLU A . n A 1 15 THR 15 3 3 THR THR A . n A 1 16 MSE 16 4 4 MSE MSE A . n A 1 17 PHE 17 5 5 PHE PHE A . n A 1 18 ASP 18 6 6 ASP ASP A . n A 1 19 THR 19 7 7 THR THR A . n A 1 20 LEU 20 8 8 LEU LEU A . n A 1 21 LEU 21 9 9 LEU LEU A . n A 1 22 GLN 22 10 10 GLN GLN A . n A 1 23 LEU 23 11 11 LEU LEU A . n A 1 24 PRO 24 12 12 PRO PRO A . n A 1 25 LEU 25 13 13 LEU LEU A . n A 1 26 PHE 26 14 14 PHE PHE A . n A 1 27 GLN 27 15 15 GLN GLN A . n A 1 28 GLY 28 16 16 GLY GLY A . n A 1 29 LEU 29 17 17 LEU LEU A . n A 1 30 CYS 30 18 18 CYS CYS A . n A 1 31 HIS 31 19 19 HIS HIS A . n A 1 32 GLU 32 20 20 GLU GLU A . n A 1 33 ASP 33 21 21 ASP ASP A . n A 1 34 PHE 34 22 22 PHE PHE A . n A 1 35 THR 35 23 23 THR THR A . n A 1 36 SER 36 24 24 SER SER A . n A 1 37 ILE 37 25 25 ILE ILE A . n A 1 38 LEU 38 26 26 LEU LEU A . n A 1 39 ASP 39 27 27 ASP ASP A . n A 1 40 LYS 40 28 28 LYS LYS A . n A 1 41 VAL 41 29 29 VAL VAL A . n A 1 42 LYS 42 30 30 LYS LYS A . n A 1 43 LEU 43 31 31 LEU LEU A . n A 1 44 HIS 44 32 32 HIS HIS A . n A 1 45 PHE 45 33 33 PHE PHE A . n A 1 46 ILE 46 34 34 ILE ILE A . n A 1 47 LYS 47 35 35 LYS LYS A . n A 1 48 HIS 48 36 36 HIS HIS A . n A 1 49 LYS 49 37 37 LYS LYS A . n A 1 50 ALA 50 38 38 ALA ALA A . n A 1 51 GLY 51 39 39 GLY GLY A . n A 1 52 GLU 52 40 40 GLU GLU A . n A 1 53 THR 53 41 41 THR THR A . n A 1 54 ILE 54 42 42 ILE ILE A . n A 1 55 ILE 55 43 43 ILE ILE A . n A 1 56 LYS 56 44 44 LYS LYS A . n A 1 57 SER 57 45 45 SER SER A . n A 1 58 GLY 58 46 46 GLY GLY A . n A 1 59 ASN 59 47 47 ASN ASN A . n A 1 60 PRO 60 48 48 PRO PRO A . n A 1 61 CYS 61 49 49 CYS CYS A . n A 1 62 THR 62 50 50 THR THR A . n A 1 63 GLN 63 51 51 GLN GLN A . n A 1 64 LEU 64 52 52 LEU LEU A . n A 1 65 CYS 65 53 53 CYS CYS A . n A 1 66 PHE 66 54 54 PHE PHE A . n A 1 67 LEU 67 55 55 LEU LEU A . n A 1 68 LEU 68 56 56 LEU LEU A . n A 1 69 LYS 69 57 57 LYS LYS A . n A 1 70 GLY 70 58 58 GLY GLY A . n A 1 71 GLU 71 59 59 GLU GLU A . n A 1 72 ILE 72 60 60 ILE ILE A . n A 1 73 SER 73 61 61 SER SER A . n A 1 74 ILE 74 62 62 ILE ILE A . n A 1 75 VAL 75 63 63 VAL VAL A . n A 1 76 THR 76 64 64 THR THR A . n A 1 77 ASN 77 65 65 ASN ASN A . n A 1 78 ALA 78 66 66 ALA ALA A . n A 1 79 LYS 79 67 67 LYS LYS A . n A 1 80 GLU 80 68 68 GLU GLU A . n A 1 81 ASN 81 69 69 ASN ASN A . n A 1 82 ILE 82 70 70 ILE ILE A . n A 1 83 TYR 83 71 71 TYR TYR A . n A 1 84 THR 84 72 72 THR THR A . n A 1 85 VAL 85 73 73 VAL VAL A . n A 1 86 ILE 86 74 74 ILE ILE A . n A 1 87 GLU 87 75 75 GLU GLU A . n A 1 88 GLN 88 76 76 GLN GLN A . n A 1 89 ILE 89 77 77 ILE ILE A . n A 1 90 GLU 90 78 78 GLU GLU A . n A 1 91 ALA 91 79 79 ALA ALA A . n A 1 92 PRO 92 80 80 PRO PRO A . n A 1 93 TYR 93 81 81 TYR TYR A . n A 1 94 LEU 94 82 82 LEU LEU A . n A 1 95 ILE 95 83 83 ILE ILE A . n A 1 96 GLU 96 84 84 GLU GLU A . n A 1 97 PRO 97 85 85 PRO PRO A . n A 1 98 GLN 98 86 86 GLN GLN A . n A 1 99 SER 99 87 87 SER SER A . n A 1 100 LEU 100 88 88 LEU LEU A . n A 1 101 PHE 101 89 89 PHE PHE A . n A 1 102 GLY 102 90 90 GLY GLY A . n A 1 103 MSE 103 91 91 MSE MSE A . n A 1 104 ASN 104 92 92 ASN ASN A . n A 1 105 THR 105 93 93 THR THR A . n A 1 106 ASN 106 94 94 ASN ASN A . n A 1 107 TYR 107 95 95 TYR TYR A . n A 1 108 ALA 108 96 96 ALA ALA A . n A 1 109 SER 109 97 97 SER SER A . n A 1 110 SER 110 98 98 SER SER A . n A 1 111 TYR 111 99 99 TYR TYR A . n A 1 112 VAL 112 100 100 VAL VAL A . n A 1 113 ALA 113 101 101 ALA ALA A . n A 1 114 HIS 114 102 102 HIS HIS A . n A 1 115 THR 115 103 103 THR THR A . n A 1 116 GLU 116 104 104 GLU GLU A . n A 1 117 VAL 117 105 105 VAL VAL A . n A 1 118 HIS 118 106 106 HIS HIS A . n A 1 119 THR 119 107 107 THR THR A . n A 1 120 VAL 120 108 108 VAL VAL A . n A 1 121 CYS 121 109 109 CYS CYS A . n A 1 122 ILE 122 110 110 ILE ILE A . n A 1 123 SER 123 111 111 SER SER A . n A 1 124 LYS 124 112 112 LYS LYS A . n A 1 125 ALA 125 113 113 ALA ALA A . n A 1 126 PHE 126 114 114 PHE PHE A . n A 1 127 VAL 127 115 115 VAL VAL A . n A 1 128 LEU 128 116 116 LEU LEU A . n A 1 129 SER 129 117 117 SER SER A . n A 1 130 ASP 130 118 118 ASP ASP A . n A 1 131 LEU 131 119 119 LEU LEU A . n A 1 132 PHE 132 120 120 PHE PHE A . n A 1 133 ARG 133 121 121 ARG ARG A . n A 1 134 TYR 134 122 122 TYR TYR A . n A 1 135 ASP 135 123 123 ASP ASP A . n A 1 136 ILE 136 124 124 ILE ILE A . n A 1 137 PHE 137 125 125 PHE PHE A . n A 1 138 ARG 138 126 126 ARG ARG A . n A 1 139 LEU 139 127 127 LEU LEU A . n A 1 140 ASN 140 128 128 ASN ASN A . n A 1 141 TYR 141 129 129 TYR TYR A . n A 1 142 MSE 142 130 130 MSE MSE A . n A 1 143 ASN 143 131 131 ASN ASN A . n A 1 144 ILE 144 132 132 ILE ILE A . n A 1 145 VAL 145 133 133 VAL VAL A . n A 1 146 SER 146 134 134 SER SER A . n A 1 147 ASN 147 135 135 ASN ASN A . n A 1 148 ARG 148 136 136 ARG ARG A . n A 1 149 ALA 149 137 137 ALA ALA A . n A 1 150 GLN 150 138 138 GLN GLN A . n A 1 151 ASN 151 139 139 ASN ASN A . n A 1 152 LEU 152 140 140 LEU LEU A . n A 1 153 TYR 153 141 141 TYR TYR A . n A 1 154 SER 154 142 142 SER SER A . n A 1 155 ARG 155 143 143 ARG ARG A . n A 1 156 LEU 156 144 144 LEU LEU A . n A 1 157 TRP 157 145 145 TRP TRP A . n A 1 158 ASP 158 146 146 ASP ASP A . n A 1 159 GLU 159 147 147 GLU GLU A . n A 1 160 PRO 160 148 148 PRO PRO A . n A 1 161 THR 161 149 149 THR THR A . n A 1 162 LEU 162 150 150 LEU LEU A . n A 1 163 ASP 163 151 151 ASP ASP A . n A 1 164 LEU 164 152 152 LEU LEU A . n A 1 165 LYS 165 153 153 LYS LYS A . n A 1 166 SER 166 154 154 SER SER A . n A 1 167 LYS 167 155 155 LYS LYS A . n A 1 168 ILE 168 156 156 ILE ILE A . n A 1 169 ILE 169 157 157 ILE ILE A . n A 1 170 ARG 170 158 158 ARG ARG A . n A 1 171 PHE 171 159 159 PHE PHE A . n A 1 172 PHE 172 160 160 PHE PHE A . n A 1 173 LEU 173 161 161 LEU LEU A . n A 1 174 SER 174 162 162 SER SER A . n A 1 175 HIS 175 163 163 HIS HIS A . n A 1 176 CYS 176 164 164 CYS CYS A . n A 1 177 GLU 177 165 165 GLU GLU A . n A 1 178 LYS 178 166 166 LYS LYS A . n A 1 179 PRO 179 167 167 PRO PRO A . n A 1 180 GLN 180 168 168 GLN GLN A . n A 1 181 GLY 181 169 169 GLY GLY A . n A 1 182 GLU 182 170 170 GLU GLU A . n A 1 183 LYS 183 171 171 LYS LYS A . n A 1 184 THR 184 172 172 THR THR A . n A 1 185 PHE 185 173 173 PHE PHE A . n A 1 186 LYS 186 174 174 LYS LYS A . n A 1 187 VAL 187 175 175 VAL VAL A . n A 1 188 LYS 188 176 176 LYS LYS A . n A 1 189 MSE 189 177 177 MSE MSE A . n A 1 190 ASP 190 178 178 ASP ASP A . n A 1 191 ASP 191 179 179 ASP ASP A . n A 1 192 LEU 192 180 180 LEU LEU A . n A 1 193 ALA 193 181 181 ALA ALA A . n A 1 194 ARG 194 182 182 ARG ARG A . n A 1 195 CYS 195 183 183 CYS CYS A . n A 1 196 LEU 196 184 184 LEU LEU A . n A 1 197 ASP 197 185 185 ASP ASP A . n A 1 198 ASP 198 186 186 ASP ASP A . n A 1 199 THR 199 187 187 THR THR A . n A 1 200 ARG 200 188 188 ARG ARG A . n A 1 201 LEU 201 189 189 LEU LEU A . n A 1 202 ASN 202 190 190 ASN ASN A . n A 1 203 ILE 203 191 191 ILE ILE A . n A 1 204 SER 204 192 192 SER SER A . n A 1 205 LYS 205 193 193 LYS LYS A . n A 1 206 THR 206 194 194 THR THR A . n A 1 207 LEU 207 195 195 LEU LEU A . n A 1 208 ASN 208 196 196 ASN ASN A . n A 1 209 GLU 209 197 197 GLU GLU A . n A 1 210 LEU 210 198 198 LEU LEU A . n A 1 211 GLN 211 199 199 GLN GLN A . n A 1 212 ASP 212 200 200 ASP ASP A . n A 1 213 ASN 213 201 201 ASN ASN A . n A 1 214 GLY 214 202 202 GLY GLY A . n A 1 215 LEU 215 203 203 LEU LEU A . n A 1 216 ILE 216 204 204 ILE ILE A . n A 1 217 GLU 217 205 205 GLU GLU A . n A 1 218 LEU 218 206 206 LEU LEU A . n A 1 219 HIS 219 207 207 HIS HIS A . n A 1 220 ARG 220 208 208 ARG ARG A . n A 1 221 LYS 221 209 209 LYS LYS A . n A 1 222 GLU 222 210 210 GLU GLU A . n A 1 223 ILE 223 211 211 ILE ILE A . n A 1 224 LEU 224 212 212 LEU LEU A . n A 1 225 ILE 225 213 213 ILE ILE A . n A 1 226 PRO 226 214 214 PRO PRO A . n A 1 227 ASP 227 215 215 ASP ASP A . n A 1 228 ALA 228 216 216 ALA ALA A . n A 1 229 GLN 229 217 217 GLN GLN A . n A 1 230 LYS 230 218 218 LYS LYS A . n A 1 231 LEU 231 219 219 LEU LEU A . n A 1 232 LEU 232 220 220 LEU LEU A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 221 1 GOL GOL A . C 2 GOL 1 222 2 GOL GOL A . D 2 GOL 1 223 3 GOL GOL A . E 2 GOL 1 224 4 GOL GOL A . F 2 GOL 1 225 5 GOL GOL A . G 2 GOL 1 226 6 GOL GOL A . H 2 GOL 1 227 7 GOL GOL A . I 3 HOH 1 228 8 HOH HOH A . I 3 HOH 2 229 9 HOH HOH A . I 3 HOH 3 230 10 HOH HOH A . I 3 HOH 4 231 11 HOH HOH A . I 3 HOH 5 232 12 HOH HOH A . I 3 HOH 6 233 13 HOH HOH A . I 3 HOH 7 234 14 HOH HOH A . I 3 HOH 8 235 15 HOH HOH A . I 3 HOH 9 236 16 HOH HOH A . I 3 HOH 10 237 17 HOH HOH A . I 3 HOH 11 238 18 HOH HOH A . I 3 HOH 12 239 19 HOH HOH A . I 3 HOH 13 240 20 HOH HOH A . I 3 HOH 14 241 21 HOH HOH A . I 3 HOH 15 242 22 HOH HOH A . I 3 HOH 16 243 23 HOH HOH A . I 3 HOH 17 244 24 HOH HOH A . I 3 HOH 18 245 25 HOH HOH A . I 3 HOH 19 246 26 HOH HOH A . I 3 HOH 20 247 27 HOH HOH A . I 3 HOH 21 248 28 HOH HOH A . I 3 HOH 22 249 29 HOH HOH A . I 3 HOH 23 250 30 HOH HOH A . I 3 HOH 24 251 31 HOH HOH A . I 3 HOH 25 252 32 HOH HOH A . I 3 HOH 26 253 33 HOH HOH A . I 3 HOH 27 254 34 HOH HOH A . I 3 HOH 28 255 35 HOH HOH A . I 3 HOH 29 256 36 HOH HOH A . I 3 HOH 30 257 37 HOH HOH A . I 3 HOH 31 258 38 HOH HOH A . I 3 HOH 32 259 39 HOH HOH A . I 3 HOH 33 260 40 HOH HOH A . I 3 HOH 34 261 41 HOH HOH A . I 3 HOH 35 262 42 HOH HOH A . I 3 HOH 36 263 43 HOH HOH A . I 3 HOH 37 264 44 HOH HOH A . I 3 HOH 38 265 45 HOH HOH A . I 3 HOH 39 266 46 HOH HOH A . I 3 HOH 40 267 47 HOH HOH A . I 3 HOH 41 268 48 HOH HOH A . I 3 HOH 42 269 49 HOH HOH A . I 3 HOH 43 270 50 HOH HOH A . I 3 HOH 44 271 51 HOH HOH A . I 3 HOH 45 272 52 HOH HOH A . I 3 HOH 46 273 53 HOH HOH A . I 3 HOH 47 274 54 HOH HOH A . I 3 HOH 48 275 55 HOH HOH A . I 3 HOH 49 276 56 HOH HOH A . I 3 HOH 50 277 57 HOH HOH A . I 3 HOH 51 278 58 HOH HOH A . I 3 HOH 52 279 59 HOH HOH A . I 3 HOH 53 280 60 HOH HOH A . I 3 HOH 54 281 61 HOH HOH A . I 3 HOH 55 282 62 HOH HOH A . I 3 HOH 56 283 63 HOH HOH A . I 3 HOH 57 284 64 HOH HOH A . I 3 HOH 58 285 65 HOH HOH A . I 3 HOH 59 286 66 HOH HOH A . I 3 HOH 60 287 67 HOH HOH A . I 3 HOH 61 288 68 HOH HOH A . I 3 HOH 62 289 69 HOH HOH A . I 3 HOH 63 290 70 HOH HOH A . I 3 HOH 64 291 71 HOH HOH A . I 3 HOH 65 292 72 HOH HOH A . I 3 HOH 66 293 73 HOH HOH A . I 3 HOH 67 294 74 HOH HOH A . I 3 HOH 68 295 75 HOH HOH A . I 3 HOH 69 296 76 HOH HOH A . I 3 HOH 70 297 77 HOH HOH A . I 3 HOH 71 298 78 HOH HOH A . I 3 HOH 72 299 79 HOH HOH A . I 3 HOH 73 300 80 HOH HOH A . I 3 HOH 74 301 81 HOH HOH A . I 3 HOH 75 302 82 HOH HOH A . I 3 HOH 76 303 83 HOH HOH A . I 3 HOH 77 304 84 HOH HOH A . I 3 HOH 78 305 85 HOH HOH A . I 3 HOH 79 306 86 HOH HOH A . I 3 HOH 80 307 87 HOH HOH A . I 3 HOH 81 308 88 HOH HOH A . I 3 HOH 82 309 89 HOH HOH A . I 3 HOH 83 310 90 HOH HOH A . I 3 HOH 84 311 91 HOH HOH A . I 3 HOH 85 312 92 HOH HOH A . I 3 HOH 86 313 93 HOH HOH A . I 3 HOH 87 314 94 HOH HOH A . I 3 HOH 88 315 95 HOH HOH A . I 3 HOH 89 316 96 HOH HOH A . I 3 HOH 90 317 97 HOH HOH A . I 3 HOH 91 318 98 HOH HOH A . I 3 HOH 92 319 99 HOH HOH A . I 3 HOH 93 320 100 HOH HOH A . I 3 HOH 94 321 101 HOH HOH A . I 3 HOH 95 322 102 HOH HOH A . I 3 HOH 96 323 103 HOH HOH A . I 3 HOH 97 324 104 HOH HOH A . I 3 HOH 98 325 105 HOH HOH A . I 3 HOH 99 326 106 HOH HOH A . I 3 HOH 100 327 107 HOH HOH A . I 3 HOH 101 328 108 HOH HOH A . I 3 HOH 102 329 109 HOH HOH A . I 3 HOH 103 330 110 HOH HOH A . I 3 HOH 104 331 111 HOH HOH A . I 3 HOH 105 332 112 HOH HOH A . I 3 HOH 106 333 113 HOH HOH A . I 3 HOH 107 334 114 HOH HOH A . I 3 HOH 108 335 115 HOH HOH A . I 3 HOH 109 336 116 HOH HOH A . I 3 HOH 110 337 117 HOH HOH A . I 3 HOH 111 338 118 HOH HOH A . I 3 HOH 112 339 119 HOH HOH A . I 3 HOH 113 340 120 HOH HOH A . I 3 HOH 114 341 121 HOH HOH A . I 3 HOH 115 342 122 HOH HOH A . I 3 HOH 116 343 123 HOH HOH A . I 3 HOH 117 344 124 HOH HOH A . I 3 HOH 118 345 125 HOH HOH A . I 3 HOH 119 346 126 HOH HOH A . I 3 HOH 120 347 127 HOH HOH A . I 3 HOH 121 348 128 HOH HOH A . I 3 HOH 122 349 129 HOH HOH A . I 3 HOH 123 350 130 HOH HOH A . I 3 HOH 124 351 131 HOH HOH A . I 3 HOH 125 352 132 HOH HOH A . I 3 HOH 126 353 133 HOH HOH A . I 3 HOH 127 354 134 HOH HOH A . I 3 HOH 128 355 135 HOH HOH A . I 3 HOH 129 356 136 HOH HOH A . I 3 HOH 130 357 137 HOH HOH A . I 3 HOH 131 358 138 HOH HOH A . I 3 HOH 132 359 139 HOH HOH A . I 3 HOH 133 360 140 HOH HOH A . I 3 HOH 134 361 141 HOH HOH A . I 3 HOH 135 362 142 HOH HOH A . I 3 HOH 136 363 143 HOH HOH A . I 3 HOH 137 364 144 HOH HOH A . I 3 HOH 138 365 145 HOH HOH A . I 3 HOH 139 366 146 HOH HOH A . I 3 HOH 140 367 147 HOH HOH A . I 3 HOH 141 368 148 HOH HOH A . I 3 HOH 142 369 149 HOH HOH A . I 3 HOH 143 370 150 HOH HOH A . I 3 HOH 144 371 151 HOH HOH A . I 3 HOH 145 372 152 HOH HOH A . I 3 HOH 146 373 153 HOH HOH A . I 3 HOH 147 374 154 HOH HOH A . I 3 HOH 148 375 155 HOH HOH A . I 3 HOH 149 376 156 HOH HOH A . I 3 HOH 150 377 157 HOH HOH A . I 3 HOH 151 378 158 HOH HOH A . I 3 HOH 152 379 159 HOH HOH A . I 3 HOH 153 380 160 HOH HOH A . I 3 HOH 154 381 161 HOH HOH A . I 3 HOH 155 382 162 HOH HOH A . I 3 HOH 156 383 163 HOH HOH A . I 3 HOH 157 384 164 HOH HOH A . I 3 HOH 158 385 165 HOH HOH A . I 3 HOH 159 386 166 HOH HOH A . I 3 HOH 160 387 167 HOH HOH A . I 3 HOH 161 388 168 HOH HOH A . I 3 HOH 162 389 169 HOH HOH A . I 3 HOH 163 390 170 HOH HOH A . I 3 HOH 164 391 171 HOH HOH A . I 3 HOH 165 392 172 HOH HOH A . I 3 HOH 166 393 173 HOH HOH A . I 3 HOH 167 394 174 HOH HOH A . I 3 HOH 168 395 175 HOH HOH A . I 3 HOH 169 396 176 HOH HOH A . I 3 HOH 170 397 177 HOH HOH A . I 3 HOH 171 398 178 HOH HOH A . I 3 HOH 172 399 179 HOH HOH A . I 3 HOH 173 400 180 HOH HOH A . I 3 HOH 174 401 181 HOH HOH A . I 3 HOH 175 402 182 HOH HOH A . I 3 HOH 176 403 183 HOH HOH A . I 3 HOH 177 404 184 HOH HOH A . I 3 HOH 178 405 185 HOH HOH A . I 3 HOH 179 406 186 HOH HOH A . I 3 HOH 180 407 187 HOH HOH A . I 3 HOH 181 408 188 HOH HOH A . I 3 HOH 182 409 189 HOH HOH A . I 3 HOH 183 410 190 HOH HOH A . I 3 HOH 184 411 191 HOH HOH A . I 3 HOH 185 412 192 HOH HOH A . I 3 HOH 186 413 193 HOH HOH A . I 3 HOH 187 414 194 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 16 A MSE 4 ? MET SELENOMETHIONINE 3 A MSE 103 A MSE 91 ? MET SELENOMETHIONINE 4 A MSE 142 A MSE 130 ? MET SELENOMETHIONINE 5 A MSE 189 A MSE 177 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7830 ? 1 MORE -42 ? 1 'SSA (A^2)' 22000 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5000000000 0.8660254038 0.0000000000 -57.9900000000 0.8660254038 -0.5000000000 0.0000000000 100.4416263309 0.0000000000 0.0000000000 -1.0000000000 -19.9398333333 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 339 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-19 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Source and taxonomy' 5 3 'Structure model' 'Version format compliance' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_struct_ref_seq_dif.details' 6 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -23.4662 _pdbx_refine_tls.origin_y 43.9930 _pdbx_refine_tls.origin_z 1.7133 _pdbx_refine_tls.T[1][1] -0.1211 _pdbx_refine_tls.T[2][2] 0.0545 _pdbx_refine_tls.T[3][3] -0.0891 _pdbx_refine_tls.T[1][2] -0.0239 _pdbx_refine_tls.T[1][3] -0.0332 _pdbx_refine_tls.T[2][3] 0.1586 _pdbx_refine_tls.L[1][1] 1.3136 _pdbx_refine_tls.L[2][2] 1.6663 _pdbx_refine_tls.L[3][3] 0.2588 _pdbx_refine_tls.L[1][2] 0.9782 _pdbx_refine_tls.L[1][3] -0.5254 _pdbx_refine_tls.L[2][3] -0.1776 _pdbx_refine_tls.S[1][1] -0.0555 _pdbx_refine_tls.S[1][2] -0.2061 _pdbx_refine_tls.S[1][3] -0.0828 _pdbx_refine_tls.S[2][1] 0.1045 _pdbx_refine_tls.S[2][2] 0.0442 _pdbx_refine_tls.S[2][3] 0.0182 _pdbx_refine_tls.S[3][1] -0.0197 _pdbx_refine_tls.S[3][2] 0.1377 _pdbx_refine_tls.S[3][3] 0.0114 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id -9 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 3 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 220 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 232 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0005 ? ? 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 1 SCALA . ? ? 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran ? 2 PDB_EXTRACT 1.601 'Jan. 30, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 4 CCP4 '(SCALA)' ? ? ? ? 'data scaling' ? ? ? 5 SOLVE . ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 7 ? ? -129.31 -82.61 2 1 GLU A 84 ? ? 38.44 60.79 3 1 ASP A 118 ? ? -107.65 -66.62 4 1 PRO A 167 ? ? -90.13 46.48 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER -9 ? OG ? A SER 3 OG 2 1 Y 1 A LYS 28 ? CE ? A LYS 40 CE 3 1 Y 1 A LYS 28 ? NZ ? A LYS 40 NZ 4 1 Y 1 A LYS 67 ? CD ? A LYS 79 CD 5 1 Y 1 A LYS 67 ? CE ? A LYS 79 CE 6 1 Y 1 A LYS 67 ? NZ ? A LYS 79 NZ 7 1 Y 1 A ARG 208 ? CG ? A ARG 220 CG 8 1 Y 1 A ARG 208 ? CD ? A ARG 220 CD 9 1 Y 1 A ARG 208 ? NE ? A ARG 220 NE 10 1 Y 1 A ARG 208 ? CZ ? A ARG 220 CZ 11 1 Y 1 A ARG 208 ? NH1 ? A ARG 220 NH1 12 1 Y 1 A ARG 208 ? NH2 ? A ARG 220 NH2 13 1 Y 1 A LYS 218 ? CD ? A LYS 230 CD 14 1 Y 1 A LYS 218 ? CE ? A LYS 230 CE 15 1 Y 1 A LYS 218 ? NZ ? A LYS 230 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -11 ? A MSE 1 2 1 Y 1 A GLY -10 ? A GLY 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH #