data_1ZYO # _entry.id 1ZYO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1ZYO RCSB RCSB033274 WWPDB D_1000033274 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1LVM 'Catalytically active tobacco ETCH virus protease complexed with product' unspecified PDB 1Q31 'Crystal structure of the tobacco ETCH virus protease C151A mutant' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ZYO _pdbx_database_status.recvd_initial_deposition_date 2005-06-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gayathri, P.' 1 'Satheshkumar, P.S.' 2 'Prasad, K.' 3 'Savithri, H.S.' 4 'Murthy, M.R.N.' 5 # _citation.id primary _citation.title ;Crystal structure of the serine protease domain of Sesbania mosaic virus polyprotein and mutational analysis of residues forming the S1-binding pocket ; _citation.journal_abbrev Virology _citation.journal_volume 346 _citation.page_first 440 _citation.page_last 451 _citation.year 2006 _citation.journal_id_ASTM VIRLAX _citation.country US _citation.journal_id_ISSN 0042-6822 _citation.journal_id_CSD 0922 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16356524 _citation.pdbx_database_id_DOI 10.1016/j.virol.2005.11.011 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Gayathri, P.' 1 primary 'Satheshkumar, P.S.' 2 primary 'Prasad, K.' 3 primary 'Nair, S.' 4 primary 'Savithri, H.S.' 5 primary 'Murthy, M.R.N.' 6 # _cell.entry_id 1ZYO _cell.length_a 74.072 _cell.length_b 74.072 _cell.length_c 68.753 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1ZYO _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'serine protease' 20430.281 1 3.4.21.19 ? 'protease domain' ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 water nat water 18.015 45 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;VLGSFYSPVKAGDEPASLVAIKSGPTTIGFGCRTKIDGEDCLLTAHHVWCNSMRPTGLAKAGKQVSVEDWEISMSSSDKM LDFAIVRVPTHVWSKLGVKSTPLVCPSSKDVITCYGGSSSDCLMSGVGSSSTSEFTWKLTHTCPTAAGWSGTPLYSSRGV VGMHVGFEEIGKLNRGVNMFYVANYLLRSNE ; _entity_poly.pdbx_seq_one_letter_code_can ;VLGSFYSPVKAGDEPASLVAIKSGPTTIGFGCRTKIDGEDCLLTAHHVWCNSMRPTGLAKAGKQVSVEDWEISMSSSDKM LDFAIVRVPTHVWSKLGVKSTPLVCPSSKDVITCYGGSSSDCLMSGVGSSSTSEFTWKLTHTCPTAAGWSGTPLYSSRGV VGMHVGFEEIGKLNRGVNMFYVANYLLRSNE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 LEU n 1 3 GLY n 1 4 SER n 1 5 PHE n 1 6 TYR n 1 7 SER n 1 8 PRO n 1 9 VAL n 1 10 LYS n 1 11 ALA n 1 12 GLY n 1 13 ASP n 1 14 GLU n 1 15 PRO n 1 16 ALA n 1 17 SER n 1 18 LEU n 1 19 VAL n 1 20 ALA n 1 21 ILE n 1 22 LYS n 1 23 SER n 1 24 GLY n 1 25 PRO n 1 26 THR n 1 27 THR n 1 28 ILE n 1 29 GLY n 1 30 PHE n 1 31 GLY n 1 32 CYS n 1 33 ARG n 1 34 THR n 1 35 LYS n 1 36 ILE n 1 37 ASP n 1 38 GLY n 1 39 GLU n 1 40 ASP n 1 41 CYS n 1 42 LEU n 1 43 LEU n 1 44 THR n 1 45 ALA n 1 46 HIS n 1 47 HIS n 1 48 VAL n 1 49 TRP n 1 50 CYS n 1 51 ASN n 1 52 SER n 1 53 MET n 1 54 ARG n 1 55 PRO n 1 56 THR n 1 57 GLY n 1 58 LEU n 1 59 ALA n 1 60 LYS n 1 61 ALA n 1 62 GLY n 1 63 LYS n 1 64 GLN n 1 65 VAL n 1 66 SER n 1 67 VAL n 1 68 GLU n 1 69 ASP n 1 70 TRP n 1 71 GLU n 1 72 ILE n 1 73 SER n 1 74 MET n 1 75 SER n 1 76 SER n 1 77 SER n 1 78 ASP n 1 79 LYS n 1 80 MET n 1 81 LEU n 1 82 ASP n 1 83 PHE n 1 84 ALA n 1 85 ILE n 1 86 VAL n 1 87 ARG n 1 88 VAL n 1 89 PRO n 1 90 THR n 1 91 HIS n 1 92 VAL n 1 93 TRP n 1 94 SER n 1 95 LYS n 1 96 LEU n 1 97 GLY n 1 98 VAL n 1 99 LYS n 1 100 SER n 1 101 THR n 1 102 PRO n 1 103 LEU n 1 104 VAL n 1 105 CYS n 1 106 PRO n 1 107 SER n 1 108 SER n 1 109 LYS n 1 110 ASP n 1 111 VAL n 1 112 ILE n 1 113 THR n 1 114 CYS n 1 115 TYR n 1 116 GLY n 1 117 GLY n 1 118 SER n 1 119 SER n 1 120 SER n 1 121 ASP n 1 122 CYS n 1 123 LEU n 1 124 MET n 1 125 SER n 1 126 GLY n 1 127 VAL n 1 128 GLY n 1 129 SER n 1 130 SER n 1 131 SER n 1 132 THR n 1 133 SER n 1 134 GLU n 1 135 PHE n 1 136 THR n 1 137 TRP n 1 138 LYS n 1 139 LEU n 1 140 THR n 1 141 HIS n 1 142 THR n 1 143 CYS n 1 144 PRO n 1 145 THR n 1 146 ALA n 1 147 ALA n 1 148 GLY n 1 149 TRP n 1 150 SER n 1 151 GLY n 1 152 THR n 1 153 PRO n 1 154 LEU n 1 155 TYR n 1 156 SER n 1 157 SER n 1 158 ARG n 1 159 GLY n 1 160 VAL n 1 161 VAL n 1 162 GLY n 1 163 MET n 1 164 HIS n 1 165 VAL n 1 166 GLY n 1 167 PHE n 1 168 GLU n 1 169 GLU n 1 170 ILE n 1 171 GLY n 1 172 LYS n 1 173 LEU n 1 174 ASN n 1 175 ARG n 1 176 GLY n 1 177 VAL n 1 178 ASN n 1 179 MET n 1 180 PHE n 1 181 TYR n 1 182 VAL n 1 183 ALA n 1 184 ASN n 1 185 TYR n 1 186 LEU n 1 187 LEU n 1 188 ARG n 1 189 SER n 1 190 ASN n 1 191 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Sobemovirus _entity_src_gen.pdbx_gene_src_gene ORF2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sesbania mosaic virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 12558 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pRSET-C _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9EB08_9VIRU _struct_ref.pdbx_db_accession Q9EB08 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 135 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1ZYO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 191 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9EB08 _struct_ref_seq.db_align_beg 135 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 325 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 135 _struct_ref_seq.pdbx_auth_seq_align_end 325 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1ZYO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_percent_sol 52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method MICROBATCH _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '0.2M Tris pH 8.0, 0.2M ammonium sulphate, 0.6M 1,6-hexane diol, 5mM mercaptoethanol, 4% glycerol, microbatch, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2004-05-02 _diffrn_detector.details 'Osmic mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'osmic mirror' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1ZYO _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 2.3 _reflns.d_resolution_low 50 _reflns.number_all 9999 _reflns.number_obs 9272 _reflns.percent_possible_obs 92.73 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 32.13 _reflns.B_iso_Wilson_estimate 45.6 _reflns.pdbx_redundancy 7.12 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.3 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 56.5 _reflns_shell.Rmerge_I_obs 0.266 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.8 _reflns_shell.pdbx_redundancy 4.09 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 554 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1ZYO _refine.ls_number_reflns_obs 7759 _refine.ls_number_reflns_all 9272 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 93.06 _refine.ls_R_factor_obs 0.25234 _refine.ls_R_factor_all 0.25234 _refine.ls_R_factor_R_work 0.2502 _refine.ls_R_factor_R_free 0.28821 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.6 _refine.ls_number_reflns_R_free 459 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.917 _refine.correlation_coeff_Fo_to_Fc_free 0.904 _refine.B_iso_mean 39.831 _refine.aniso_B[1][1] 2.78 _refine.aniso_B[2][2] 2.78 _refine.aniso_B[3][3] -4.16 _refine.aniso_B[1][2] 1.39 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIRAS _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.503 _refine.pdbx_overall_ESU_R_Free 0.306 _refine.overall_SU_ML 0.251 _refine.overall_SU_B 10.879 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1346 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 45 _refine_hist.number_atoms_total 1397 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.021 ? 1385 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.211 1.945 ? 1885 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.650 5.000 ? 182 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 25.145 22.326 ? 43 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.530 15.000 ? 205 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.767 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.079 0.200 ? 217 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1020 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.197 0.200 ? 618 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.301 0.200 ? 949 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.124 0.200 ? 75 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.223 0.200 ? 38 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.080 0.200 ? 11 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.518 1.500 ? 924 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.924 2.000 ? 1462 'X-RAY DIFFRACTION' ? r_scbond_it 0.990 3.000 ? 533 'X-RAY DIFFRACTION' ? r_scangle_it 1.672 4.500 ? 423 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.400 _refine_ls_shell.d_res_low 2.462 _refine_ls_shell.number_reflns_R_work 402 _refine_ls_shell.R_factor_R_work 0.351 _refine_ls_shell.percent_reflns_obs 66.98 _refine_ls_shell.R_factor_R_free 0.355 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 30 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 1ZYO _struct.title 'Crystal Structure of the Serine Protease Domain of Sesbania Mosaic Virus polyprotein' _struct.pdbx_descriptor 'serine protease (E.C.3.4.21.19)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ZYO _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'viral serine protease of trypsin fold, beta-barrel, glutamyl endopeptidase, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 45 ? CYS A 50 ? ALA A 179 CYS A 184 1 ? 6 HELX_P HELX_P2 2 PRO A 89 ? GLY A 97 ? PRO A 223 GLY A 231 1 ? 9 HELX_P HELX_P3 3 ASN A 178 ? LEU A 186 ? ASN A 312 LEU A 320 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 114 SG ? ? ? 1_555 A CYS 143 SG ? ? A CYS 248 A CYS 277 1_555 ? ? ? ? ? ? ? 2.030 ? disulf2 disulf ? ? A CYS 122 SG ? ? ? 1_555 A CYS 122 SG ? ? A CYS 256 A CYS 256 5_674 ? ? ? ? ? ? ? 2.664 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 7 ? VAL A 9 ? SER A 141 VAL A 143 A 2 LEU A 123 ? THR A 132 ? LEU A 257 THR A 266 A 3 LYS A 138 ? HIS A 141 ? LYS A 272 HIS A 275 A 4 LEU A 173 ? VAL A 177 ? LEU A 307 VAL A 311 A 5 VAL A 160 ? GLU A 169 ? VAL A 294 GLU A 303 A 6 PRO A 153 ? TYR A 155 ? PRO A 287 TYR A 289 A 7 ASP A 110 ? GLY A 117 ? ASP A 244 GLY A 251 A 8 LEU A 123 ? THR A 132 ? LEU A 257 THR A 266 B 1 LYS A 63 ? SER A 66 ? LYS A 197 SER A 200 B 2 GLY A 57 ? LYS A 60 ? GLY A 191 LYS A 194 B 3 LEU A 18 ? SER A 23 ? LEU A 152 SER A 157 B 4 THR A 26 ? THR A 34 ? THR A 160 THR A 168 B 5 CYS A 41 ? THR A 44 ? CYS A 175 THR A 178 B 6 PHE A 83 ? ARG A 87 ? PHE A 217 ARG A 221 B 7 GLU A 71 ? SER A 76 ? GLU A 205 SER A 210 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 9 ? N VAL A 143 O LEU A 123 ? O LEU A 257 A 2 3 N SER A 131 ? N SER A 265 O THR A 140 ? O THR A 274 A 3 4 N LEU A 139 ? N LEU A 273 O GLY A 176 ? O GLY A 310 A 4 5 O LEU A 173 ? O LEU A 307 N GLU A 168 ? N GLU A 302 A 5 6 O GLY A 162 ? O GLY A 296 N LEU A 154 ? N LEU A 288 A 6 7 O TYR A 155 ? O TYR A 289 N THR A 113 ? N THR A 247 A 7 8 N GLY A 116 ? N GLY A 250 O MET A 124 ? O MET A 258 B 1 2 O VAL A 65 ? O VAL A 199 N LEU A 58 ? N LEU A 192 B 2 3 O ALA A 59 ? O ALA A 193 N ALA A 20 ? N ALA A 154 B 3 4 N SER A 23 ? N SER A 157 O THR A 26 ? O THR A 160 B 4 5 N THR A 34 ? N THR A 168 O CYS A 41 ? O CYS A 175 B 5 6 N LEU A 42 ? N LEU A 176 O VAL A 86 ? O VAL A 220 B 6 7 O ILE A 85 ? O ILE A 219 N MET A 74 ? N MET A 208 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE GOL A 500' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HIS A 47 ? HIS A 181 . ? 1_555 ? 2 AC1 5 ALA A 146 ? ALA A 280 . ? 1_555 ? 3 AC1 5 GLY A 148 ? GLY A 282 . ? 1_555 ? 4 AC1 5 SER A 150 ? SER A 284 . ? 1_555 ? 5 AC1 5 HIS A 164 ? HIS A 298 . ? 1_555 ? # _database_PDB_matrix.entry_id 1ZYO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1ZYO _atom_sites.fract_transf_matrix[1][1] 0.013500 _atom_sites.fract_transf_matrix[1][2] 0.007794 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015589 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014545 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 135 ? ? ? A . n A 1 2 LEU 2 136 ? ? ? A . n A 1 3 GLY 3 137 ? ? ? A . n A 1 4 SER 4 138 138 SER SER A . n A 1 5 PHE 5 139 139 PHE PHE A . n A 1 6 TYR 6 140 140 TYR TYR A . n A 1 7 SER 7 141 141 SER SER A . n A 1 8 PRO 8 142 142 PRO PRO A . n A 1 9 VAL 9 143 143 VAL VAL A . n A 1 10 LYS 10 144 144 LYS LYS A . n A 1 11 ALA 11 145 145 ALA ALA A . n A 1 12 GLY 12 146 146 GLY GLY A . n A 1 13 ASP 13 147 147 ASP ASP A . n A 1 14 GLU 14 148 148 GLU GLU A . n A 1 15 PRO 15 149 149 PRO PRO A . n A 1 16 ALA 16 150 150 ALA ALA A . n A 1 17 SER 17 151 151 SER SER A . n A 1 18 LEU 18 152 152 LEU LEU A . n A 1 19 VAL 19 153 153 VAL VAL A . n A 1 20 ALA 20 154 154 ALA ALA A . n A 1 21 ILE 21 155 155 ILE ILE A . n A 1 22 LYS 22 156 156 LYS LYS A . n A 1 23 SER 23 157 157 SER SER A . n A 1 24 GLY 24 158 158 GLY GLY A . n A 1 25 PRO 25 159 159 PRO PRO A . n A 1 26 THR 26 160 160 THR THR A . n A 1 27 THR 27 161 161 THR THR A . n A 1 28 ILE 28 162 162 ILE ILE A . n A 1 29 GLY 29 163 163 GLY GLY A . n A 1 30 PHE 30 164 164 PHE PHE A . n A 1 31 GLY 31 165 165 GLY GLY A . n A 1 32 CYS 32 166 166 CYS CYS A . n A 1 33 ARG 33 167 167 ARG ARG A . n A 1 34 THR 34 168 168 THR THR A . n A 1 35 LYS 35 169 169 LYS LYS A . n A 1 36 ILE 36 170 170 ILE ILE A . n A 1 37 ASP 37 171 ? ? ? A . n A 1 38 GLY 38 172 ? ? ? A . n A 1 39 GLU 39 173 173 GLU GLU A . n A 1 40 ASP 40 174 174 ASP ASP A . n A 1 41 CYS 41 175 175 CYS CYS A . n A 1 42 LEU 42 176 176 LEU LEU A . n A 1 43 LEU 43 177 177 LEU LEU A . n A 1 44 THR 44 178 178 THR THR A . n A 1 45 ALA 45 179 179 ALA ALA A . n A 1 46 HIS 46 180 180 HIS HIS A . n A 1 47 HIS 47 181 181 HIS HIS A . n A 1 48 VAL 48 182 182 VAL VAL A . n A 1 49 TRP 49 183 183 TRP TRP A . n A 1 50 CYS 50 184 184 CYS CYS A . n A 1 51 ASN 51 185 185 ASN ASN A . n A 1 52 SER 52 186 186 SER SER A . n A 1 53 MET 53 187 187 MET MET A . n A 1 54 ARG 54 188 188 ARG ARG A . n A 1 55 PRO 55 189 189 PRO PRO A . n A 1 56 THR 56 190 190 THR THR A . n A 1 57 GLY 57 191 191 GLY GLY A . n A 1 58 LEU 58 192 192 LEU LEU A . n A 1 59 ALA 59 193 193 ALA ALA A . n A 1 60 LYS 60 194 194 LYS LYS A . n A 1 61 ALA 61 195 195 ALA ALA A . n A 1 62 GLY 62 196 196 GLY GLY A . n A 1 63 LYS 63 197 197 LYS LYS A . n A 1 64 GLN 64 198 198 GLN GLN A . n A 1 65 VAL 65 199 199 VAL VAL A . n A 1 66 SER 66 200 200 SER SER A . n A 1 67 VAL 67 201 201 VAL VAL A . n A 1 68 GLU 68 202 202 GLU GLU A . n A 1 69 ASP 69 203 203 ASP ASP A . n A 1 70 TRP 70 204 204 TRP TRP A . n A 1 71 GLU 71 205 205 GLU GLU A . n A 1 72 ILE 72 206 206 ILE ILE A . n A 1 73 SER 73 207 207 SER SER A . n A 1 74 MET 74 208 208 MET MET A . n A 1 75 SER 75 209 209 SER SER A . n A 1 76 SER 76 210 210 SER SER A . n A 1 77 SER 77 211 211 SER SER A . n A 1 78 ASP 78 212 212 ASP ASP A . n A 1 79 LYS 79 213 213 LYS LYS A . n A 1 80 MET 80 214 214 MET MET A . n A 1 81 LEU 81 215 215 LEU LEU A . n A 1 82 ASP 82 216 216 ASP ASP A . n A 1 83 PHE 83 217 217 PHE PHE A . n A 1 84 ALA 84 218 218 ALA ALA A . n A 1 85 ILE 85 219 219 ILE ILE A . n A 1 86 VAL 86 220 220 VAL VAL A . n A 1 87 ARG 87 221 221 ARG ARG A . n A 1 88 VAL 88 222 222 VAL VAL A . n A 1 89 PRO 89 223 223 PRO PRO A . n A 1 90 THR 90 224 224 THR THR A . n A 1 91 HIS 91 225 225 HIS HIS A . n A 1 92 VAL 92 226 226 VAL VAL A . n A 1 93 TRP 93 227 227 TRP TRP A . n A 1 94 SER 94 228 228 SER SER A . n A 1 95 LYS 95 229 229 LYS LYS A . n A 1 96 LEU 96 230 230 LEU LEU A . n A 1 97 GLY 97 231 231 GLY GLY A . n A 1 98 VAL 98 232 232 VAL VAL A . n A 1 99 LYS 99 233 233 LYS LYS A . n A 1 100 SER 100 234 234 SER SER A . n A 1 101 THR 101 235 235 THR THR A . n A 1 102 PRO 102 236 236 PRO PRO A . n A 1 103 LEU 103 237 237 LEU LEU A . n A 1 104 VAL 104 238 238 VAL VAL A . n A 1 105 CYS 105 239 239 CYS CYS A . n A 1 106 PRO 106 240 240 PRO PRO A . n A 1 107 SER 107 241 241 SER SER A . n A 1 108 SER 108 242 242 SER SER A . n A 1 109 LYS 109 243 243 LYS LYS A . n A 1 110 ASP 110 244 244 ASP ASP A . n A 1 111 VAL 111 245 245 VAL VAL A . n A 1 112 ILE 112 246 246 ILE ILE A . n A 1 113 THR 113 247 247 THR THR A . n A 1 114 CYS 114 248 248 CYS CYS A . n A 1 115 TYR 115 249 249 TYR TYR A . n A 1 116 GLY 116 250 250 GLY GLY A . n A 1 117 GLY 117 251 251 GLY GLY A . n A 1 118 SER 118 252 252 SER SER A . n A 1 119 SER 119 253 253 SER SER A . n A 1 120 SER 120 254 254 SER SER A . n A 1 121 ASP 121 255 255 ASP ASP A . n A 1 122 CYS 122 256 256 CYS CYS A . n A 1 123 LEU 123 257 257 LEU LEU A . n A 1 124 MET 124 258 258 MET MET A . n A 1 125 SER 125 259 259 SER SER A . n A 1 126 GLY 126 260 260 GLY GLY A . n A 1 127 VAL 127 261 261 VAL VAL A . n A 1 128 GLY 128 262 262 GLY GLY A . n A 1 129 SER 129 263 263 SER SER A . n A 1 130 SER 130 264 264 SER SER A . n A 1 131 SER 131 265 265 SER SER A . n A 1 132 THR 132 266 266 THR THR A . n A 1 133 SER 133 267 267 SER SER A . n A 1 134 GLU 134 268 268 GLU GLU A . n A 1 135 PHE 135 269 269 PHE PHE A . n A 1 136 THR 136 270 270 THR THR A . n A 1 137 TRP 137 271 271 TRP TRP A . n A 1 138 LYS 138 272 272 LYS LYS A . n A 1 139 LEU 139 273 273 LEU LEU A . n A 1 140 THR 140 274 274 THR THR A . n A 1 141 HIS 141 275 275 HIS HIS A . n A 1 142 THR 142 276 276 THR THR A . n A 1 143 CYS 143 277 277 CYS CYS A . n A 1 144 PRO 144 278 278 PRO PRO A . n A 1 145 THR 145 279 279 THR THR A . n A 1 146 ALA 146 280 280 ALA ALA A . n A 1 147 ALA 147 281 281 ALA ALA A . n A 1 148 GLY 148 282 282 GLY GLY A . n A 1 149 TRP 149 283 283 TRP TRP A . n A 1 150 SER 150 284 284 SER SER A . n A 1 151 GLY 151 285 285 GLY GLY A . n A 1 152 THR 152 286 286 THR THR A . n A 1 153 PRO 153 287 287 PRO PRO A . n A 1 154 LEU 154 288 288 LEU LEU A . n A 1 155 TYR 155 289 289 TYR TYR A . n A 1 156 SER 156 290 290 SER SER A . n A 1 157 SER 157 291 291 SER SER A . n A 1 158 ARG 158 292 292 ARG ARG A . n A 1 159 GLY 159 293 293 GLY GLY A . n A 1 160 VAL 160 294 294 VAL VAL A . n A 1 161 VAL 161 295 295 VAL VAL A . n A 1 162 GLY 162 296 296 GLY GLY A . n A 1 163 MET 163 297 297 MET MET A . n A 1 164 HIS 164 298 298 HIS HIS A . n A 1 165 VAL 165 299 299 VAL VAL A . n A 1 166 GLY 166 300 300 GLY GLY A . n A 1 167 PHE 167 301 301 PHE PHE A . n A 1 168 GLU 168 302 302 GLU GLU A . n A 1 169 GLU 169 303 303 GLU GLU A . n A 1 170 ILE 170 304 304 ILE ILE A . n A 1 171 GLY 171 305 305 GLY GLY A . n A 1 172 LYS 172 306 306 LYS LYS A . n A 1 173 LEU 173 307 307 LEU LEU A . n A 1 174 ASN 174 308 308 ASN ASN A . n A 1 175 ARG 175 309 309 ARG ARG A . n A 1 176 GLY 176 310 310 GLY GLY A . n A 1 177 VAL 177 311 311 VAL VAL A . n A 1 178 ASN 178 312 312 ASN ASN A . n A 1 179 MET 179 313 313 MET MET A . n A 1 180 PHE 180 314 314 PHE PHE A . n A 1 181 TYR 181 315 315 TYR TYR A . n A 1 182 VAL 182 316 316 VAL VAL A . n A 1 183 ALA 183 317 317 ALA ALA A . n A 1 184 ASN 184 318 318 ASN ASN A . n A 1 185 TYR 185 319 319 TYR TYR A . n A 1 186 LEU 186 320 320 LEU LEU A . n A 1 187 LEU 187 321 321 LEU LEU A . n A 1 188 ARG 188 322 322 ARG ARG A . n A 1 189 SER 189 323 323 SER SER A . n A 1 190 ASN 190 324 ? ? ? A . n A 1 191 GLU 191 325 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 500 500 GOL GOL A . C 3 HOH 1 1 1 HOH HOH A . C 3 HOH 2 2 2 HOH HOH A . C 3 HOH 3 3 3 HOH HOH A . C 3 HOH 4 4 4 HOH HOH A . C 3 HOH 5 5 5 HOH HOH A . C 3 HOH 6 6 6 HOH HOH A . C 3 HOH 7 7 7 HOH HOH A . C 3 HOH 8 8 8 HOH HOH A . C 3 HOH 9 9 9 HOH HOH A . C 3 HOH 10 10 10 HOH HOH A . C 3 HOH 11 11 11 HOH HOH A . C 3 HOH 12 12 12 HOH HOH A . C 3 HOH 13 13 13 HOH HOH A . C 3 HOH 14 14 14 HOH HOH A . C 3 HOH 15 15 15 HOH HOH A . C 3 HOH 16 16 16 HOH HOH A . C 3 HOH 17 17 17 HOH HOH A . C 3 HOH 18 18 18 HOH HOH A . C 3 HOH 19 19 19 HOH HOH A . C 3 HOH 20 20 20 HOH HOH A . C 3 HOH 21 21 21 HOH HOH A . C 3 HOH 22 22 22 HOH HOH A . C 3 HOH 23 23 23 HOH HOH A . C 3 HOH 24 24 24 HOH HOH A . C 3 HOH 25 25 25 HOH HOH A . C 3 HOH 26 26 26 HOH HOH A . C 3 HOH 27 27 27 HOH HOH A . C 3 HOH 28 28 28 HOH HOH A . C 3 HOH 29 29 29 HOH HOH A . C 3 HOH 30 30 30 HOH HOH A . C 3 HOH 31 31 31 HOH HOH A . C 3 HOH 32 32 32 HOH HOH A . C 3 HOH 33 33 33 HOH HOH A . C 3 HOH 34 34 34 HOH HOH A . C 3 HOH 35 35 35 HOH HOH A . C 3 HOH 36 36 36 HOH HOH A . C 3 HOH 37 37 37 HOH HOH A . C 3 HOH 38 38 38 HOH HOH A . C 3 HOH 39 39 39 HOH HOH A . C 3 HOH 40 40 40 HOH HOH A . C 3 HOH 41 41 41 HOH HOH A . C 3 HOH 42 42 42 HOH HOH A . C 3 HOH 43 43 43 HOH HOH A . C 3 HOH 44 44 44 HOH HOH A . C 3 HOH 45 45 45 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 13 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-04-25 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0009 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MLPHARE phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 186 ? ? -103.56 -169.63 2 1 ASP A 203 ? ? -66.90 73.52 3 1 LYS A 213 ? ? -32.73 -35.96 4 1 SER A 241 ? ? -127.24 -168.17 5 1 CYS A 256 ? ? -112.12 60.44 6 1 ILE A 304 ? ? -56.17 108.48 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 144 ? CG ? A LYS 10 CG 2 1 Y 1 A LYS 144 ? CD ? A LYS 10 CD 3 1 Y 1 A LYS 144 ? CE ? A LYS 10 CE 4 1 Y 1 A LYS 144 ? NZ ? A LYS 10 NZ 5 1 Y 1 A LYS 169 ? CG ? A LYS 35 CG 6 1 Y 1 A LYS 169 ? CD ? A LYS 35 CD 7 1 Y 1 A LYS 169 ? CE ? A LYS 35 CE 8 1 Y 1 A LYS 169 ? NZ ? A LYS 35 NZ 9 1 Y 1 A GLU 173 ? CG ? A GLU 39 CG 10 1 Y 1 A GLU 173 ? CD ? A GLU 39 CD 11 1 Y 1 A GLU 173 ? OE1 ? A GLU 39 OE1 12 1 Y 1 A GLU 173 ? OE2 ? A GLU 39 OE2 13 1 Y 1 A ASN 185 ? CG ? A ASN 51 CG 14 1 Y 1 A ASN 185 ? OD1 ? A ASN 51 OD1 15 1 Y 1 A ASN 185 ? ND2 ? A ASN 51 ND2 16 1 Y 1 A GLU 205 ? CG ? A GLU 71 CG 17 1 Y 1 A GLU 205 ? CD ? A GLU 71 CD 18 1 Y 1 A GLU 205 ? OE1 ? A GLU 71 OE1 19 1 Y 1 A GLU 205 ? OE2 ? A GLU 71 OE2 20 1 Y 1 A LYS 213 ? CD ? A LYS 79 CD 21 1 Y 1 A LYS 213 ? CE ? A LYS 79 CE 22 1 Y 1 A LYS 213 ? NZ ? A LYS 79 NZ 23 1 Y 1 A LYS 229 ? CE ? A LYS 95 CE 24 1 Y 1 A LYS 229 ? NZ ? A LYS 95 NZ 25 1 Y 1 A LYS 233 ? CE ? A LYS 99 CE 26 1 Y 1 A LYS 233 ? NZ ? A LYS 99 NZ 27 1 Y 1 A LYS 243 ? CD ? A LYS 109 CD 28 1 Y 1 A LYS 243 ? CE ? A LYS 109 CE 29 1 Y 1 A LYS 243 ? NZ ? A LYS 109 NZ 30 1 Y 1 A LYS 306 ? CD ? A LYS 172 CD 31 1 Y 1 A LYS 306 ? CE ? A LYS 172 CE 32 1 Y 1 A LYS 306 ? NZ ? A LYS 172 NZ 33 1 Y 1 A MET 313 ? CE ? A MET 179 CE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 135 ? A VAL 1 2 1 Y 1 A LEU 136 ? A LEU 2 3 1 Y 1 A GLY 137 ? A GLY 3 4 1 Y 1 A ASP 171 ? A ASP 37 5 1 Y 1 A GLY 172 ? A GLY 38 6 1 Y 1 A ASN 324 ? A ASN 190 7 1 Y 1 A GLU 325 ? A GLU 191 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH #