HEADER OXIDOREDUCTASE 13-JUN-05 1ZZD TITLE STRUCTURES OF YEAST RIBONUCLEOTIDE REDUCTASE I COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RIBONUCLEOTIDE REDUCTASE; COMPND 5 EC: 1.17.4.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN 2; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT 2; COMPND 11 EC: 1.17.4.1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: RNR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PWJ751-3; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: CHEMICALLY SYNTHESIZED, THIS SEQUENE OCCURS NATURALLY SOURCE 14 IN YEAST. KEYWDS EUKARYOTIC, RIBONUCLEOTIDE REDUCTASE, DNTP REGULATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.XU,C.FABER,T.UCHIKI,J.W.FAIRMAN,J.RACCA,C.DEALWIS REVDAT 5 30-OCT-24 1ZZD 1 REMARK REVDAT 4 03-APR-24 1ZZD 1 REMARK REVDAT 3 24-FEB-09 1ZZD 1 VERSN REVDAT 2 04-APR-06 1ZZD 1 JRNL REVDAT 1 07-MAR-06 1ZZD 0 JRNL AUTH H.XU,C.FABER,T.UCHIKI,J.W.FAIRMAN,J.RACCA,C.DEALWIS JRNL TITL STRUCTURES OF EUKARYOTIC RIBONUCLEOTIDE REDUCTASE I PROVIDE JRNL TITL 2 INSIGHTS INTO DNTP REGULATION JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 4022 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 16537479 JRNL DOI 10.1073/PNAS.0600443103 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0007 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 23454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2626 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1673 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5183 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.788 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.331 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.671 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5305 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7182 ; 1.728 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 642 ; NULL ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 251 ; NULL ;24.104 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 921 ; NULL ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ; NULL ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 779 ; NULL ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4032 ; NULL ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2638 ; NULL ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3624 ; NULL ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 237 ; NULL ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; NULL ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; NULL ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3291 ; NULL ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5197 ; NULL ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2306 ; NULL ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1985 ; NULL ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZZD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26145 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : 0.11000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.73600 REMARK 200 R SYM FOR SHELL (I) : 0.73600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NATIVE STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM ACETATE, AMMONIUM REMARK 280 SULFATE, PH 6.5, EVAPORATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 54.16050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.84100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 54.16050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.84100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE ACTIVE BIOLOGICAL DIMER ASSEMBLY IS REMARK 300 GENERATED BY THE TWO FOLD AXIS: -X, -Y+1, Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 117.68200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 VAL A 3 REMARK 465 TYR A 4 REMARK 465 LYS A 5 REMARK 465 ARG A 6 REMARK 465 ASP A 7 REMARK 465 GLY A 8 REMARK 465 ARG A 9 REMARK 465 LYS A 10 REMARK 465 GLU A 11 REMARK 465 PRO A 12 REMARK 465 VAL A 13 REMARK 465 GLN A 14 REMARK 465 PHE A 15 REMARK 465 ASP A 16 REMARK 465 LYS A 17 REMARK 465 ILE A 18 REMARK 465 THR A 19 REMARK 465 ALA A 20 REMARK 465 ARG A 21 REMARK 465 ILE A 22 REMARK 465 SER A 23 REMARK 465 ARG A 24 REMARK 465 LEU A 25 REMARK 465 CYS A 26 REMARK 465 TYR A 27 REMARK 465 GLY A 28 REMARK 465 LEU A 29 REMARK 465 ASP A 30 REMARK 465 PRO A 31 REMARK 465 LYS A 32 REMARK 465 HIS A 33 REMARK 465 ILE A 34 REMARK 465 ASP A 35 REMARK 465 ALA A 36 REMARK 465 VAL A 37 REMARK 465 LYS A 38 REMARK 465 VAL A 39 REMARK 465 THR A 40 REMARK 465 GLN A 41 REMARK 465 ARG A 42 REMARK 465 ILE A 43 REMARK 465 ILE A 44 REMARK 465 SER A 45 REMARK 465 GLY A 46 REMARK 465 VAL A 47 REMARK 465 TYR A 48 REMARK 465 GLU A 49 REMARK 465 GLY A 50 REMARK 465 VAL A 51 REMARK 465 THR A 52 REMARK 465 THR A 53 REMARK 465 ILE A 54 REMARK 465 GLU A 55 REMARK 465 LEU A 56 REMARK 465 ASP A 57 REMARK 465 ASN A 58 REMARK 465 LEU A 59 REMARK 465 ALA A 60 REMARK 465 ALA A 61 REMARK 465 GLU A 62 REMARK 465 THR A 63 REMARK 465 CYS A 64 REMARK 465 ALA A 65 REMARK 465 TYR A 66 REMARK 465 MET A 67 REMARK 465 THR A 68 REMARK 465 THR A 69 REMARK 465 VAL A 70 REMARK 465 HIS A 71 REMARK 465 PRO A 72 REMARK 465 ASP A 73 REMARK 465 TYR A 74 REMARK 465 ALA A 75 REMARK 465 THR A 76 REMARK 465 LEU A 77 REMARK 465 ALA A 78 REMARK 465 ALA A 79 REMARK 465 ARG A 80 REMARK 465 ILE A 81 REMARK 465 ALA A 82 REMARK 465 ILE A 83 REMARK 465 SER A 84 REMARK 465 ASN A 85 REMARK 465 LEU A 86 REMARK 465 HIS A 87 REMARK 465 LYS A 88 REMARK 465 GLN A 89 REMARK 465 THR A 90 REMARK 465 ASP A 287 REMARK 465 GLN A 288 REMARK 465 GLY A 289 REMARK 465 GLY A 290 REMARK 465 ASN A 291 REMARK 465 LYS A 292 REMARK 465 ARG A 293 REMARK 465 PRO A 294 REMARK 465 GLY A 295 REMARK 465 ARG A 631 REMARK 465 ARG A 632 REMARK 465 VAL A 633 REMARK 465 LEU A 634 REMARK 465 SER A 635 REMARK 465 GLY A 636 REMARK 465 GLU A 637 REMARK 465 ALA A 747 REMARK 465 ALA A 748 REMARK 465 SER A 749 REMARK 465 ALA A 750 REMARK 465 ALA A 751 REMARK 465 ILE A 752 REMARK 465 GLN A 753 REMARK 465 PHE A 754 REMARK 465 THR A 755 REMARK 465 ILE A 756 REMARK 465 ASP A 757 REMARK 465 GLN A 758 REMARK 465 LYS A 759 REMARK 465 ILE A 760 REMARK 465 ALA A 761 REMARK 465 ASP A 762 REMARK 465 GLN A 763 REMARK 465 ALA A 764 REMARK 465 THR A 765 REMARK 465 GLU A 766 REMARK 465 ASN A 767 REMARK 465 VAL A 768 REMARK 465 ALA A 769 REMARK 465 ASP A 770 REMARK 465 ILE A 771 REMARK 465 SER A 772 REMARK 465 ASN A 773 REMARK 465 LEU A 774 REMARK 465 LYS A 775 REMARK 465 ARG A 776 REMARK 465 PRO A 777 REMARK 465 SER A 778 REMARK 465 TYR A 779 REMARK 465 MET A 780 REMARK 465 PRO A 781 REMARK 465 SER A 782 REMARK 465 SER A 783 REMARK 465 ALA A 784 REMARK 465 SER A 785 REMARK 465 TYR A 786 REMARK 465 ALA A 787 REMARK 465 ALA A 788 REMARK 465 SER A 789 REMARK 465 ASP A 790 REMARK 465 PHE A 791 REMARK 465 VAL A 792 REMARK 465 PRO A 793 REMARK 465 ALA A 794 REMARK 465 ALA A 795 REMARK 465 VAL A 796 REMARK 465 THR A 797 REMARK 465 ALA A 798 REMARK 465 ASN A 799 REMARK 465 ALA A 800 REMARK 465 THR A 801 REMARK 465 ILE A 802 REMARK 465 PRO A 803 REMARK 465 SER A 804 REMARK 465 LEU A 805 REMARK 465 ASP A 806 REMARK 465 SER A 807 REMARK 465 SER A 808 REMARK 465 SER A 809 REMARK 465 GLU A 810 REMARK 465 ALA A 811 REMARK 465 SER A 812 REMARK 465 ARG A 813 REMARK 465 GLU A 814 REMARK 465 ALA A 815 REMARK 465 SER A 816 REMARK 465 PRO A 817 REMARK 465 ALA A 818 REMARK 465 PRO A 819 REMARK 465 THR A 820 REMARK 465 GLY A 821 REMARK 465 SER A 822 REMARK 465 HIS A 823 REMARK 465 SER A 824 REMARK 465 LEU A 825 REMARK 465 THR A 826 REMARK 465 LYS A 827 REMARK 465 GLY A 828 REMARK 465 MET A 829 REMARK 465 ALA A 830 REMARK 465 GLU A 831 REMARK 465 LEU A 832 REMARK 465 ASN A 833 REMARK 465 VAL A 834 REMARK 465 GLN A 835 REMARK 465 GLU A 836 REMARK 465 SER A 837 REMARK 465 LYS A 838 REMARK 465 VAL A 839 REMARK 465 GLU A 840 REMARK 465 VAL A 841 REMARK 465 PRO A 842 REMARK 465 GLU A 843 REMARK 465 VAL A 844 REMARK 465 PRO A 845 REMARK 465 ALA A 846 REMARK 465 PRO A 847 REMARK 465 THR A 848 REMARK 465 LYS A 849 REMARK 465 ASN A 850 REMARK 465 GLU A 851 REMARK 465 GLU A 852 REMARK 465 LYS A 853 REMARK 465 ALA A 854 REMARK 465 ALA A 855 REMARK 465 PRO A 856 REMARK 465 ILE A 857 REMARK 465 VAL A 858 REMARK 465 ASP A 859 REMARK 465 ASP A 860 REMARK 465 GLU A 861 REMARK 465 GLU A 862 REMARK 465 THR A 863 REMARK 465 GLU A 864 REMARK 465 PHE A 865 REMARK 465 ASP A 866 REMARK 465 ILE A 867 REMARK 465 TYR A 868 REMARK 465 ASN A 869 REMARK 465 SER A 870 REMARK 465 LYS A 871 REMARK 465 VAL A 872 REMARK 465 ILE A 873 REMARK 465 ALA A 874 REMARK 465 CYS A 875 REMARK 465 ALA A 876 REMARK 465 ILE A 877 REMARK 465 ASP A 878 REMARK 465 ASN A 879 REMARK 465 PRO A 880 REMARK 465 GLU A 881 REMARK 465 ALA A 882 REMARK 465 CYS A 883 REMARK 465 GLU A 884 REMARK 465 MET A 885 REMARK 465 CYS A 886 REMARK 465 SER A 887 REMARK 465 GLY A 888 REMARK 465 LYS B -1 REMARK 465 GLU B 0 REMARK 465 ILE B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 520 OD2 ASP A 648 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 100 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 140 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 182 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 226 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP B 4 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 92 60.03 19.06 REMARK 500 GLN A 93 125.71 178.24 REMARK 500 ALA A 108 2.32 -65.95 REMARK 500 THR A 109 -15.73 -147.49 REMARK 500 ASN A 127 30.44 -141.60 REMARK 500 SER A 154 -8.31 -141.41 REMARK 500 ILE A 159 -74.90 -102.26 REMARK 500 ASN A 160 62.26 -111.95 REMARK 500 LYS A 212 78.39 -113.54 REMARK 500 GLU A 225 146.19 -179.78 REMARK 500 THR A 244 42.64 -94.75 REMARK 500 ALA A 245 -148.46 53.18 REMARK 500 PRO A 303 0.43 -65.31 REMARK 500 HIS A 318 27.04 -75.46 REMARK 500 GLU A 321 -82.91 9.73 REMARK 500 ARG A 324 -158.08 -89.30 REMARK 500 ALA A 325 99.74 158.35 REMARK 500 GLU A 377 4.89 -69.82 REMARK 500 SER A 425 -157.36 -106.80 REMARK 500 ALA A 452 -2.97 -57.19 REMARK 500 GLU A 458 79.57 -18.73 REMARK 500 ASP A 459 -135.33 175.60 REMARK 500 ASP A 576 59.50 39.10 REMARK 500 THR A 602 -21.60 -148.93 REMARK 500 ALA A 604 79.03 -165.42 REMARK 500 ALA A 609 -104.03 41.07 REMARK 500 GLU A 619 99.00 -34.19 REMARK 500 CYS A 620 -101.26 37.29 REMARK 500 GLN A 639 106.29 130.11 REMARK 500 ASN A 642 114.81 -37.71 REMARK 500 ASP A 651 -9.85 -53.73 REMARK 500 TRP A 655 25.77 -69.91 REMARK 500 MET A 659 -66.34 -139.12 REMARK 500 THR A 665 42.12 -83.37 REMARK 500 ASN A 667 -4.61 88.01 REMARK 500 ASP A 707 -49.87 -23.10 REMARK 500 GLN A 708 -116.83 -110.47 REMARK 500 ARG A 717 -77.53 -79.16 REMARK 500 ALA A 718 70.25 -100.51 REMARK 500 TYR A 741 -124.26 -80.60 REMARK 500 PHE B 3 71.36 34.08 REMARK 500 REMARK 500 REMARK: NULL DBREF 1ZZD A 1 888 UNP P21524 RIR1_YEAST 1 888 DBREF 1ZZD B -1 7 UNP P49723 RIR4_YEAST 337 345 SEQRES 1 A 888 MET TYR VAL TYR LYS ARG ASP GLY ARG LYS GLU PRO VAL SEQRES 2 A 888 GLN PHE ASP LYS ILE THR ALA ARG ILE SER ARG LEU CYS SEQRES 3 A 888 TYR GLY LEU ASP PRO LYS HIS ILE ASP ALA VAL LYS VAL SEQRES 4 A 888 THR GLN ARG ILE ILE SER GLY VAL TYR GLU GLY VAL THR SEQRES 5 A 888 THR ILE GLU LEU ASP ASN LEU ALA ALA GLU THR CYS ALA SEQRES 6 A 888 TYR MET THR THR VAL HIS PRO ASP TYR ALA THR LEU ALA SEQRES 7 A 888 ALA ARG ILE ALA ILE SER ASN LEU HIS LYS GLN THR THR SEQRES 8 A 888 LYS GLN PHE SER LYS VAL VAL GLU ASP LEU TYR ARG TYR SEQRES 9 A 888 VAL ASN ALA ALA THR GLY LYS PRO ALA PRO MET ILE SER SEQRES 10 A 888 ASP ASP VAL TYR ASN ILE VAL MET GLU ASN LYS ASP LYS SEQRES 11 A 888 LEU ASN SER ALA ILE VAL TYR ASP ARG ASP PHE GLN TYR SEQRES 12 A 888 SER TYR PHE GLY PHE LYS THR LEU GLU ARG SER TYR LEU SEQRES 13 A 888 LEU ARG ILE ASN GLY GLN VAL ALA GLU ARG PRO GLN HIS SEQRES 14 A 888 LEU ILE MET ARG VAL ALA LEU GLY ILE HIS GLY ARG ASP SEQRES 15 A 888 ILE GLU ALA ALA LEU GLU THR TYR ASN LEU MET SER LEU SEQRES 16 A 888 LYS TYR PHE THR HIS ALA SER PRO THR LEU PHE ASN ALA SEQRES 17 A 888 GLY THR PRO LYS PRO GLN MET SER SER CYS PHE LEU VAL SEQRES 18 A 888 ALA MET LYS GLU ASP SER ILE GLU GLY ILE TYR ASP THR SEQRES 19 A 888 LEU LYS GLU CYS ALA LEU ILE SER LYS THR ALA GLY GLY SEQRES 20 A 888 ILE GLY LEU HIS ILE HIS ASN ILE ARG SER THR GLY SER SEQRES 21 A 888 TYR ILE ALA GLY THR ASN GLY THR SER ASN GLY LEU ILE SEQRES 22 A 888 PRO MET ILE ARG VAL PHE ASN ASN THR ALA ARG TYR VAL SEQRES 23 A 888 ASP GLN GLY GLY ASN LYS ARG PRO GLY ALA PHE ALA LEU SEQRES 24 A 888 TYR LEU GLU PRO TRP HIS ALA ASP ILE PHE ASP PHE ILE SEQRES 25 A 888 ASP ILE ARG LYS ASN HIS GLY LYS GLU GLU ILE ARG ALA SEQRES 26 A 888 ARG ASP LEU PHE PRO ALA LEU TRP ILE PRO ASP LEU PHE SEQRES 27 A 888 MET LYS ARG VAL GLU GLU ASN GLY THR TRP THR LEU PHE SEQRES 28 A 888 SER PRO THR SER ALA PRO GLY LEU SER ASP CYS TYR GLY SEQRES 29 A 888 ASP GLU PHE GLU ALA LEU TYR THR ARG TYR GLU LYS GLU SEQRES 30 A 888 GLY ARG GLY LYS THR ILE LYS ALA GLN LYS LEU TRP TYR SEQRES 31 A 888 SER ILE LEU GLU ALA GLN THR GLU THR GLY THR PRO PHE SEQRES 32 A 888 VAL VAL TYR LYS ASP ALA CYS ASN ARG LYS SER ASN GLN SEQRES 33 A 888 LYS ASN LEU GLY VAL ILE LYS SER SER ASN LEU CYS CYS SEQRES 34 A 888 GLU ILE VAL GLU TYR SER ALA PRO ASP GLU THR ALA VAL SEQRES 35 A 888 CYS ASN LEU ALA SER VAL ALA LEU PRO ALA PHE ILE GLU SEQRES 36 A 888 THR SER GLU ASP GLY LYS THR SER THR TYR ASN PHE LYS SEQRES 37 A 888 LYS LEU HIS GLU ILE ALA LYS VAL VAL THR ARG ASN LEU SEQRES 38 A 888 ASN ARG VAL ILE ASP ARG ASN TYR TYR PRO VAL GLU GLU SEQRES 39 A 888 ALA ARG LYS SER ASN MET ARG HIS ARG PRO ILE ALA LEU SEQRES 40 A 888 GLY VAL GLN GLY LEU ALA ASP THR PHE MET LEU LEU ARG SEQRES 41 A 888 LEU PRO PHE ASP SER GLU GLU ALA ARG LEU LEU ASN ILE SEQRES 42 A 888 GLN ILE PHE GLU THR ILE TYR HIS ALA SER MET GLU ALA SEQRES 43 A 888 SER CYS GLU LEU ALA GLN LYS ASP GLY PRO TYR GLU THR SEQRES 44 A 888 PHE GLN GLY SER PRO ALA SER GLN GLY ILE LEU GLN PHE SEQRES 45 A 888 ASP MET TRP ASP GLN LYS PRO TYR GLY MET TRP ASP TRP SEQRES 46 A 888 ASP THR LEU ARG LYS ASP ILE MET LYS HIS GLY VAL ARG SEQRES 47 A 888 ASN SER LEU THR MET ALA PRO MET PRO THR ALA SER THR SEQRES 48 A 888 SER GLN ILE LEU GLY TYR ASN GLU CYS PHE GLU PRO VAL SEQRES 49 A 888 THR SER ASN MET TYR SER ARG ARG VAL LEU SER GLY GLU SEQRES 50 A 888 PHE GLN VAL VAL ASN PRO TYR LEU LEU ARG ASP LEU VAL SEQRES 51 A 888 ASP LEU GLY ILE TRP ASP GLU GLY MET LYS GLN TYR LEU SEQRES 52 A 888 ILE THR GLN ASN GLY SER ILE GLN GLY LEU PRO ASN VAL SEQRES 53 A 888 PRO GLN GLU LEU LYS ASP LEU TYR LYS THR VAL TRP GLU SEQRES 54 A 888 ILE SER GLN LYS THR ILE ILE ASN MET ALA ALA ASP ARG SEQRES 55 A 888 SER VAL TYR ILE ASP GLN SER HIS SER LEU ASN LEU PHE SEQRES 56 A 888 LEU ARG ALA PRO THR MET GLY LYS LEU THR SER MET HIS SEQRES 57 A 888 PHE TYR GLY TRP LYS LYS GLY LEU LYS THR GLY MET TYR SEQRES 58 A 888 TYR LEU ARG THR GLN ALA ALA SER ALA ALA ILE GLN PHE SEQRES 59 A 888 THR ILE ASP GLN LYS ILE ALA ASP GLN ALA THR GLU ASN SEQRES 60 A 888 VAL ALA ASP ILE SER ASN LEU LYS ARG PRO SER TYR MET SEQRES 61 A 888 PRO SER SER ALA SER TYR ALA ALA SER ASP PHE VAL PRO SEQRES 62 A 888 ALA ALA VAL THR ALA ASN ALA THR ILE PRO SER LEU ASP SEQRES 63 A 888 SER SER SER GLU ALA SER ARG GLU ALA SER PRO ALA PRO SEQRES 64 A 888 THR GLY SER HIS SER LEU THR LYS GLY MET ALA GLU LEU SEQRES 65 A 888 ASN VAL GLN GLU SER LYS VAL GLU VAL PRO GLU VAL PRO SEQRES 66 A 888 ALA PRO THR LYS ASN GLU GLU LYS ALA ALA PRO ILE VAL SEQRES 67 A 888 ASP ASP GLU GLU THR GLU PHE ASP ILE TYR ASN SER LYS SEQRES 68 A 888 VAL ILE ALA CYS ALA ILE ASP ASN PRO GLU ALA CYS GLU SEQRES 69 A 888 MET CYS SER GLY SEQRES 1 B 9 LYS GLU ILE ASN PHE ASP ASP ASP PHE FORMUL 3 HOH *58(H2 O) HELIX 1 1 GLN A 93 TYR A 104 1 12 HELIX 2 2 SER A 117 ASN A 127 1 11 HELIX 3 3 ASN A 127 ILE A 135 1 9 HELIX 4 4 VAL A 136 PHE A 141 5 6 HELIX 5 5 SER A 144 TYR A 155 1 12 HELIX 6 6 ARG A 166 GLY A 180 1 15 HELIX 7 7 ASP A 182 LEU A 195 1 14 HELIX 8 8 ALA A 201 ALA A 208 1 8 HELIX 9 9 SER A 227 THR A 244 1 18 HELIX 10 10 LEU A 272 VAL A 286 1 15 HELIX 11 11 ASP A 307 ILE A 312 1 6 HELIX 12 12 LYS A 320 ARG A 324 5 5 HELIX 13 13 PRO A 335 GLU A 344 1 10 HELIX 14 14 GLY A 358 CYS A 362 5 5 HELIX 15 15 TYR A 363 GLU A 377 1 15 HELIX 16 16 ALA A 385 GLY A 400 1 16 HELIX 17 17 LYS A 407 LYS A 413 1 7 HELIX 18 18 GLN A 416 GLY A 420 5 5 HELIX 19 19 ASN A 466 ASN A 488 1 23 HELIX 20 20 VAL A 492 ARG A 503 1 12 HELIX 21 21 GLY A 511 LEU A 519 1 9 HELIX 22 22 SER A 525 GLY A 555 1 31 HELIX 23 23 GLN A 571 ASP A 576 5 6 HELIX 24 24 ASP A 584 GLY A 596 1 13 HELIX 25 25 THR A 608 GLY A 616 1 9 HELIX 26 26 ASN A 642 ASP A 651 1 10 HELIX 27 27 ASP A 656 THR A 665 1 10 HELIX 28 28 PRO A 677 TYR A 684 1 8 HELIX 29 29 THR A 686 ILE A 690 5 5 HELIX 30 30 SER A 691 SER A 703 1 13 HELIX 31 31 VAL A 704 ILE A 706 5 3 HELIX 32 32 THR A 720 LYS A 734 1 15 SHEET 1 A 3 PHE A 198 HIS A 200 0 SHEET 2 A 3 LEU A 445 ALA A 449 -1 O SER A 447 N THR A 199 SHEET 3 A 3 ALA A 506 GLN A 510 1 O GLY A 508 N VAL A 448 SHEET 1 B 6 CYS A 218 ALA A 222 0 SHEET 2 B 6 GLY A 247 HIS A 251 1 O GLY A 249 N PHE A 219 SHEET 3 B 6 PHE A 297 LEU A 301 1 O TYR A 300 N LEU A 250 SHEET 4 B 6 LEU A 328 ILE A 334 1 O PHE A 329 N LEU A 299 SHEET 5 B 6 PHE A 403 TYR A 406 1 O PHE A 403 N LEU A 332 SHEET 6 B 6 THR A 738 MET A 740 -1 O MET A 740 N VAL A 404 SHEET 1 C 2 THR A 347 LEU A 350 0 SHEET 2 C 2 LYS A 381 LYS A 384 -1 O ILE A 383 N TRP A 348 SHEET 1 D 2 ILE A 454 GLU A 455 0 SHEET 2 D 2 THR A 464 TYR A 465 -1 O THR A 464 N GLU A 455 SHEET 1 E 2 MET A 628 TYR A 629 0 SHEET 2 E 2 VAL A 640 VAL A 641 -1 O VAL A 640 N TYR A 629 SHEET 1 F 2 LEU A 714 PHE A 715 0 SHEET 2 F 2 LEU A 743 ARG A 744 1 O ARG A 744 N LEU A 714 SSBOND 1 CYS A 218 CYS A 443 1555 1555 2.05 CISPEP 1 THR A 401 PRO A 402 0 2.89 CRYST1 108.321 117.682 64.518 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009232 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015500 0.00000