data_205D # _entry.id 205D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 205D pdb_0000205d 10.2210/pdb205d/pdb RCSB URL029 ? ? WWPDB D_1000177556 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1995-09-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 205D _pdbx_database_status.recvd_initial_deposition_date 1995-04-14 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Baeyens, K.J.' 1 'De Bondt, H.L.' 2 'Holbrook, S.R.' 3 # _citation.id primary _citation.title 'Structure of an RNA double helix including uracil-uracil base pairs in an internal loop.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 2 _citation.page_first 56 _citation.page_last 62 _citation.year 1995 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7719854 _citation.pdbx_database_id_DOI 10.1038/nsb0195-56 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baeyens, K.J.' 1 ? primary 'De Bondt, H.L.' 2 ? primary 'Holbrook, S.R.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;RNA (5'-R(*GP*GP*AP*CP*UP*UP*UP*GP*GP*UP*CP*C)-3') ; 3805.280 2 ? ? ? ? 2 water nat water 18.015 39 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGACUUUGGUCC _entity_poly.pdbx_seq_one_letter_code_can GGACUUUGGUCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 U n 1 6 U n 1 7 U n 1 8 G n 1 9 G n 1 10 U n 1 11 C n 1 12 C n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 C 4 4 4 C C A . n A 1 5 U 5 5 5 U U A . n A 1 6 U 6 6 6 U U A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 G 9 9 9 G G A . n A 1 10 U 10 10 10 U U A . n A 1 11 C 11 11 11 C C A . n A 1 12 C 12 12 12 C C A . n B 1 1 G 1 13 13 G G B . n B 1 2 G 2 14 14 G G B . n B 1 3 A 3 15 15 A A B . n B 1 4 C 4 16 16 C C B . n B 1 5 U 5 17 17 U U B . n B 1 6 U 6 18 18 U U B . n B 1 7 U 7 19 19 U U B . n B 1 8 G 8 20 20 G G B . n B 1 9 G 9 21 21 G G B . n B 1 10 U 10 22 22 U U B . n B 1 11 C 11 23 23 C C B . n B 1 12 C 12 24 24 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 25 25 HOH HOH A . C 2 HOH 2 27 27 HOH HOH A . C 2 HOH 3 29 29 HOH HOH A . C 2 HOH 4 31 31 HOH HOH A . C 2 HOH 5 32 32 HOH HOH A . C 2 HOH 6 33 33 HOH HOH A . C 2 HOH 7 35 35 HOH HOH A . C 2 HOH 8 36 36 HOH HOH A . C 2 HOH 9 37 37 HOH HOH A . C 2 HOH 10 39 39 HOH HOH A . C 2 HOH 11 41 41 HOH HOH A . C 2 HOH 12 45 45 HOH HOH A . C 2 HOH 13 47 47 HOH HOH A . C 2 HOH 14 48 48 HOH HOH A . C 2 HOH 15 49 49 HOH HOH A . C 2 HOH 16 50 50 HOH HOH A . C 2 HOH 17 52 52 HOH HOH A . C 2 HOH 18 54 54 HOH HOH A . C 2 HOH 19 55 55 HOH HOH A . C 2 HOH 20 58 58 HOH HOH A . C 2 HOH 21 62 62 HOH HOH A . C 2 HOH 22 63 63 HOH HOH A . D 2 HOH 1 26 26 HOH HOH B . D 2 HOH 2 28 28 HOH HOH B . D 2 HOH 3 30 30 HOH HOH B . D 2 HOH 4 34 34 HOH HOH B . D 2 HOH 5 38 38 HOH HOH B . D 2 HOH 6 40 40 HOH HOH B . D 2 HOH 7 42 42 HOH HOH B . D 2 HOH 8 43 43 HOH HOH B . D 2 HOH 9 44 44 HOH HOH B . D 2 HOH 10 46 46 HOH HOH B . D 2 HOH 11 51 51 HOH HOH B . D 2 HOH 12 53 53 HOH HOH B . D 2 HOH 13 56 56 HOH HOH B . D 2 HOH 14 57 57 HOH HOH B . D 2 HOH 15 59 59 HOH HOH B . D 2 HOH 16 60 60 HOH HOH B . D 2 HOH 17 61 61 HOH HOH B . # _software.name X-PLOR _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 205D _cell.length_a 32.440 _cell.length_b 32.440 _cell.length_c 85.480 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 205D _symmetry.space_group_name_H-M 'P 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 # _exptl.entry_id 205D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.95 _exptl_crystal.density_percent_sol 57.0000 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.60 _exptl_crystal_grow.pdbx_details 'pH 5.60, VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 PEG ? ? ? 1 3 1 EDTA ? ? ? 1 4 1 'NH4 ACETATE' ? ? ? 1 5 1 'NA CITRATE' ? ? ? 1 6 1 SPERMINE_HCL ? ? ? 1 7 2 WATER ? ? ? 1 8 2 PEG ? ? ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1993-07-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type SSRL _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 205D _reflns.observed_criterion_sigma_I 2.600 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.640 _reflns.number_obs 2415 _reflns.number_all ? _reflns.percent_possible_obs 90.100 _reflns.pdbx_Rmerge_I_obs 0.108 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 205D _refine.ls_number_reflns_obs 2233 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.640 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.197 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.197 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 502 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 39 _refine_hist.number_atoms_total 541 _refine_hist.d_res_high 2.640 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.028 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.60 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 205D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 205D _struct.title 'STRUCTURE OF AN RNA DOUBLE HELIX INCLUDING URACIL-URACIL BASE PAIRS IN AN INTERNAL LOOP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 205D _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'A-RNA, DOUBLE HELIX, INTERNAL LOOP, MISMATCHED, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 205D _struct_ref.pdbx_db_accession 205D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 205D A 1 ? 12 ? 205D 1 ? 12 ? 1 12 2 1 205D B 1 ? 12 ? 205D 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 1 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 1 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 1 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 2 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 2 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 2 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 10 N3 ? ? A A 3 B U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 10 O4 ? ? A A 3 B U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 9 N1 ? ? A C 4 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 9 O6 ? ? A C 4 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 9 N2 ? ? A C 4 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 B G 8 O6 ? ? A U 5 B G 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A U 5 O2 ? ? ? 1_555 B G 8 N1 ? ? A U 5 B G 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 B U 7 O4 ? ? A U 6 B U 19 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog15 hydrog ? ? A U 6 O2 ? ? ? 1_555 B U 7 N3 ? ? A U 6 B U 19 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog16 hydrog ? ? A U 6 N3 ? ? ? 1_555 B G 8 O6 ? ? A U 6 B G 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? A U 6 O2 ? ? ? 1_555 B G 8 N1 ? ? A U 6 B G 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A U 7 N3 ? ? ? 1_555 B U 6 O2 ? ? A U 7 B U 18 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog19 hydrog ? ? A U 7 O4 ? ? ? 1_555 B U 6 N3 ? ? A U 7 B U 18 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog20 hydrog ? ? A G 8 N1 ? ? ? 1_555 B U 5 O2 ? ? A G 8 B U 17 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog21 hydrog ? ? A G 8 O6 ? ? ? 1_555 B U 5 N3 ? ? A G 8 B U 17 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog22 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 9 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 9 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 9 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 9 N1 ? ? ? 1_555 B U 5 O2 ? ? A G 9 B U 17 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? A G 9 O6 ? ? ? 1_555 B U 5 N3 ? ? A G 9 B U 17 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? A U 10 N3 ? ? ? 1_555 B A 3 N1 ? ? A U 10 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 10 O4 ? ? ? 1_555 B A 3 N6 ? ? A U 10 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 11 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 11 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 11 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 12 B G 13 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O3'" A G 8 ? ? O A HOH 31 ? ? 1.54 2 1 OP2 B C 24 ? ? O B HOH 28 ? ? 2.14 3 1 "O3'" B C 24 ? ? O B HOH 46 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 "C5'" A C 11 ? ? 1_555 O A HOH 49 ? ? 4_554 1.78 2 1 "C4'" A C 11 ? ? 1_555 O A HOH 49 ? ? 4_554 1.83 3 1 "O4'" A C 11 ? ? 1_555 O A HOH 49 ? ? 4_554 1.99 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C6 A G 1 ? ? N1 A G 1 ? ? 1.341 1.391 -0.050 0.007 N 2 1 "C4'" A G 2 ? ? "C3'" A G 2 ? ? 1.419 1.521 -0.102 0.010 N 3 1 "C2'" A G 2 ? ? "C1'" A G 2 ? ? 1.442 1.526 -0.084 0.008 N 4 1 "C2'" A C 4 ? ? "C1'" A C 4 ? ? 1.474 1.526 -0.052 0.008 N 5 1 "C5'" A U 5 ? ? "C4'" A U 5 ? ? 1.462 1.508 -0.046 0.007 N 6 1 N1 A U 5 ? ? C2 A U 5 ? ? 1.443 1.381 0.062 0.009 N 7 1 P A U 6 ? ? "O5'" A U 6 ? ? 1.702 1.593 0.109 0.010 N 8 1 "C5'" A U 6 ? ? "C4'" A U 6 ? ? 1.386 1.508 -0.122 0.007 N 9 1 P A U 7 ? ? "O5'" A U 7 ? ? 1.692 1.593 0.099 0.010 N 10 1 "C4'" A C 11 ? ? "C3'" A C 11 ? ? 1.435 1.521 -0.086 0.010 N 11 1 N3 A C 11 ? ? C4 A C 11 ? ? 1.293 1.335 -0.042 0.007 N 12 1 "C2'" A C 12 ? ? "C1'" A C 12 ? ? 1.474 1.526 -0.052 0.008 N 13 1 "C2'" B A 15 ? ? "C1'" B A 15 ? ? 1.472 1.526 -0.054 0.008 N 14 1 C4 B A 15 ? ? C5 B A 15 ? ? 1.328 1.383 -0.055 0.007 N 15 1 "C5'" B C 16 ? ? "C4'" B C 16 ? ? 1.459 1.508 -0.049 0.007 N 16 1 "C2'" B C 16 ? ? "C1'" B C 16 ? ? 1.632 1.529 0.103 0.011 N 17 1 "O5'" B U 17 ? ? "C5'" B U 17 ? ? 1.364 1.420 -0.056 0.009 N 18 1 "C3'" B U 17 ? ? "C2'" B U 17 ? ? 1.367 1.523 -0.156 0.011 N 19 1 "O4'" B U 17 ? ? "C4'" B U 17 ? ? 1.371 1.451 -0.080 0.013 N 20 1 C4 B U 17 ? ? O4 B U 17 ? ? 1.173 1.232 -0.059 0.008 N 21 1 "O3'" B U 17 ? ? P B U 18 ? ? 1.524 1.607 -0.083 0.012 Y 22 1 "C2'" B U 18 ? ? "C1'" B U 18 ? ? 1.471 1.526 -0.055 0.008 N 23 1 P B U 19 ? ? "O5'" B U 19 ? ? 1.666 1.593 0.073 0.010 N 24 1 "C3'" B G 21 ? ? "C2'" B G 21 ? ? 1.434 1.523 -0.089 0.011 N 25 1 "C2'" B G 21 ? ? "C1'" B G 21 ? ? 1.461 1.526 -0.065 0.008 N 26 1 N1 B G 21 ? ? C2 B G 21 ? ? 1.322 1.373 -0.051 0.008 N 27 1 C6 B G 21 ? ? N1 B G 21 ? ? 1.331 1.391 -0.060 0.007 N 28 1 "C5'" B U 22 ? ? "C4'" B U 22 ? ? 1.435 1.508 -0.073 0.007 N 29 1 "C4'" B U 22 ? ? "C3'" B U 22 ? ? 1.438 1.521 -0.083 0.010 N 30 1 "C4'" B C 23 ? ? "C3'" B C 23 ? ? 1.457 1.521 -0.064 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" A G 2 ? ? "C4'" A G 2 ? ? "C3'" A G 2 ? ? 106.46 115.20 -8.74 1.40 N 2 1 "O3'" A G 2 ? ? P A A 3 ? ? OP2 A A 3 ? ? 131.70 110.50 21.20 1.10 Y 3 1 "O3'" A G 2 ? ? P A A 3 ? ? OP1 A A 3 ? ? 62.15 105.20 -43.05 2.20 Y 4 1 "C5'" A C 4 ? ? "C4'" A C 4 ? ? "O4'" A C 4 ? ? 115.96 109.80 6.16 0.90 N 5 1 "O4'" A C 4 ? ? "C1'" A C 4 ? ? N1 A C 4 ? ? 112.90 108.50 4.40 0.70 N 6 1 "O3'" A C 4 ? ? P A U 5 ? ? OP2 A U 5 ? ? 41.99 105.20 -63.21 2.20 Y 7 1 "O3'" A C 4 ? ? P A U 5 ? ? OP1 A U 5 ? ? 152.28 110.50 41.78 1.10 Y 8 1 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.56 108.50 5.06 0.70 N 9 1 "O3'" A U 5 ? ? P A U 6 ? ? OP2 A U 6 ? ? 90.69 105.20 -14.51 2.20 Y 10 1 "O3'" A U 5 ? ? P A U 6 ? ? OP1 A U 6 ? ? 134.22 110.50 23.72 1.10 Y 11 1 "C1'" A U 6 ? ? "O4'" A U 6 ? ? "C4'" A U 6 ? ? 104.23 109.70 -5.47 0.70 N 12 1 N1 A U 6 ? ? "C1'" A U 6 ? ? "C2'" A U 6 ? ? 103.75 112.00 -8.25 1.10 N 13 1 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 112.80 108.50 4.30 0.70 N 14 1 "C3'" A U 6 ? ? "O3'" A U 6 ? ? P A U 7 ? ? 112.05 119.70 -7.65 1.20 Y 15 1 "O3'" A U 6 ? ? P A U 7 ? ? "O5'" A U 7 ? ? 86.15 104.00 -17.85 1.90 Y 16 1 "O3'" A U 6 ? ? P A U 7 ? ? OP2 A U 7 ? ? 136.56 110.50 26.06 1.10 Y 17 1 "O3'" A U 6 ? ? P A U 7 ? ? OP1 A U 7 ? ? 89.73 105.20 -15.47 2.20 Y 18 1 "O3'" A U 7 ? ? P A G 8 ? ? "O5'" A G 8 ? ? 81.19 104.00 -22.81 1.90 Y 19 1 "O3'" A U 7 ? ? P A G 8 ? ? OP2 A G 8 ? ? 125.61 110.50 15.11 1.10 Y 20 1 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 112.86 108.50 4.36 0.70 N 21 1 "O3'" A G 8 ? ? P A G 9 ? ? OP2 A G 9 ? ? 119.14 110.50 8.64 1.10 Y 22 1 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 112.81 108.50 4.31 0.70 N 23 1 "O3'" A G 9 ? ? P A U 10 ? ? "O5'" A U 10 ? ? 88.66 104.00 -15.34 1.90 Y 24 1 "O3'" A U 10 ? ? P A C 11 ? ? "O5'" A C 11 ? ? 154.79 104.00 50.79 1.90 Y 25 1 "O3'" A U 10 ? ? P A C 11 ? ? OP2 A C 11 ? ? 86.46 105.20 -18.74 2.20 Y 26 1 "O3'" A U 10 ? ? P A C 11 ? ? OP1 A C 11 ? ? 74.02 105.20 -31.18 2.20 Y 27 1 "C5'" A C 11 ? ? "C4'" A C 11 ? ? "O4'" A C 11 ? ? 118.11 109.80 8.31 0.90 N 28 1 "O4'" A C 11 ? ? "C1'" A C 11 ? ? N1 A C 11 ? ? 114.16 108.50 5.66 0.70 N 29 1 N1 A C 11 ? ? C2 A C 11 ? ? O2 A C 11 ? ? 122.60 118.90 3.70 0.60 N 30 1 "O3'" A C 11 ? ? P A C 12 ? ? OP2 A C 12 ? ? 118.96 110.50 8.46 1.10 Y 31 1 "O3'" A C 11 ? ? P A C 12 ? ? OP1 A C 12 ? ? 83.18 105.20 -22.02 2.20 Y 32 1 "O3'" B G 13 ? ? P B G 14 ? ? "O5'" B G 14 ? ? 84.68 104.00 -19.32 1.90 Y 33 1 "C5'" B G 14 ? ? "C4'" B G 14 ? ? "C3'" B G 14 ? ? 104.51 115.20 -10.69 1.40 N 34 1 "O3'" B G 14 ? ? P B A 15 ? ? "O5'" B A 15 ? ? 90.63 104.00 -13.37 1.90 Y 35 1 "C5'" B A 15 ? ? "C4'" B A 15 ? ? "C3'" B A 15 ? ? 103.74 115.20 -11.46 1.40 N 36 1 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 113.69 108.50 5.19 0.70 N 37 1 "O3'" B A 15 ? ? P B C 16 ? ? "O5'" B C 16 ? ? 123.94 104.00 19.94 1.90 Y 38 1 "O3'" B A 15 ? ? P B C 16 ? ? OP1 B C 16 ? ? 85.46 105.20 -19.74 2.20 Y 39 1 "C5'" B C 16 ? ? "C4'" B C 16 ? ? "C3'" B C 16 ? ? 103.92 115.20 -11.28 1.40 N 40 1 N1 B C 16 ? ? "C1'" B C 16 ? ? "C2'" B C 16 ? ? 102.65 112.00 -9.35 1.10 N 41 1 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 120.35 108.50 11.85 0.70 N 42 1 "O3'" B C 16 ? ? P B U 17 ? ? "O5'" B U 17 ? ? 152.68 104.00 48.68 1.90 Y 43 1 "O3'" B C 16 ? ? P B U 17 ? ? OP2 B U 17 ? ? 88.59 105.20 -16.61 2.20 Y 44 1 "O3'" B C 16 ? ? P B U 17 ? ? OP1 B U 17 ? ? 76.74 105.20 -28.46 2.20 Y 45 1 "C3'" B U 17 ? ? "C2'" B U 17 ? ? "C1'" B U 17 ? ? 96.59 101.30 -4.71 0.70 N 46 1 N1 B U 17 ? ? "C1'" B U 17 ? ? "C2'" B U 17 ? ? 105.31 112.00 -6.69 1.10 N 47 1 "O4'" B U 17 ? ? "C1'" B U 17 ? ? N1 B U 17 ? ? 115.85 108.50 7.35 0.70 N 48 1 C4 B U 17 ? ? C5 B U 17 ? ? C6 B U 17 ? ? 123.50 119.70 3.80 0.60 N 49 1 C5 B U 17 ? ? C6 B U 17 ? ? N1 B U 17 ? ? 118.67 122.70 -4.03 0.50 N 50 1 N3 B U 17 ? ? C2 B U 17 ? ? O2 B U 17 ? ? 115.28 122.20 -6.92 0.70 N 51 1 "O3'" B U 17 ? ? P B U 18 ? ? "O5'" B U 18 ? ? 58.84 104.00 -45.16 1.90 Y 52 1 "O3'" B U 17 ? ? P B U 18 ? ? OP2 B U 18 ? ? 155.35 110.50 44.85 1.10 Y 53 1 "O3'" B U 17 ? ? P B U 18 ? ? OP1 B U 18 ? ? 84.77 105.20 -20.43 2.20 Y 54 1 "O4'" B U 18 ? ? "C1'" B U 18 ? ? N1 B U 18 ? ? 116.24 108.50 7.74 0.70 N 55 1 "O3'" B U 18 ? ? P B U 19 ? ? "O5'" B U 19 ? ? 86.71 104.00 -17.29 1.90 Y 56 1 "O3'" B U 18 ? ? P B U 19 ? ? OP2 B U 19 ? ? 156.66 110.50 46.16 1.10 Y 57 1 "O3'" B U 18 ? ? P B U 19 ? ? OP1 B U 19 ? ? 62.87 105.20 -42.33 2.20 Y 58 1 "C4'" B G 20 ? ? "C3'" B G 20 ? ? "C2'" B G 20 ? ? 96.20 102.60 -6.40 1.00 N 59 1 "O4'" B G 20 ? ? "C1'" B G 20 ? ? N9 B G 20 ? ? 113.18 108.50 4.68 0.70 N 60 1 "C3'" B G 20 ? ? "O3'" B G 20 ? ? P B G 21 ? ? 127.18 119.70 7.48 1.20 Y 61 1 "O3'" B G 20 ? ? P B G 21 ? ? "O5'" B G 21 ? ? 118.62 104.00 14.62 1.90 Y 62 1 "O3'" B G 20 ? ? P B G 21 ? ? OP2 B G 21 ? ? 127.04 110.50 16.54 1.10 Y 63 1 "O3'" B G 20 ? ? P B G 21 ? ? OP1 B G 21 ? ? 74.05 105.20 -31.15 2.20 Y 64 1 "C1'" B G 21 ? ? "O4'" B G 21 ? ? "C4'" B G 21 ? ? 104.89 109.70 -4.81 0.70 N 65 1 "O3'" B G 21 ? ? P B U 22 ? ? "O5'" B U 22 ? ? 115.93 104.00 11.93 1.90 Y 66 1 "O3'" B G 21 ? ? P B U 22 ? ? OP2 B U 22 ? ? 118.41 110.50 7.91 1.10 Y 67 1 "O3'" B G 21 ? ? P B U 22 ? ? OP1 B U 22 ? ? 80.17 105.20 -25.03 2.20 Y 68 1 "C5'" B U 22 ? ? "C4'" B U 22 ? ? "C3'" B U 22 ? ? 106.21 115.20 -8.99 1.40 N 69 1 "O4'" B U 22 ? ? "C1'" B U 22 ? ? N1 B U 22 ? ? 112.87 108.50 4.37 0.70 N 70 1 "O3'" B U 22 ? ? P B C 23 ? ? "O5'" B C 23 ? ? 148.79 104.00 44.79 1.90 Y 71 1 "O3'" B U 22 ? ? P B C 23 ? ? OP1 B C 23 ? ? 73.58 105.20 -31.62 2.20 Y 72 1 "C5'" B C 23 ? ? "C4'" B C 23 ? ? "O4'" B C 23 ? ? 115.52 109.80 5.72 0.90 N 73 1 "O4'" B C 23 ? ? "C1'" B C 23 ? ? N1 B C 23 ? ? 113.64 108.50 5.14 0.70 N 74 1 N1 B C 23 ? ? C2 B C 23 ? ? O2 B C 23 ? ? 123.24 118.90 4.34 0.60 N 75 1 N1 B C 24 ? ? C2 B C 24 ? ? O2 B C 24 ? ? 123.77 118.90 4.87 0.60 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 U OP3 O N N 114 U P P N N 115 U OP1 O N N 116 U OP2 O N N 117 U "O5'" O N N 118 U "C5'" C N N 119 U "C4'" C N R 120 U "O4'" O N N 121 U "C3'" C N S 122 U "O3'" O N N 123 U "C2'" C N R 124 U "O2'" O N N 125 U "C1'" C N R 126 U N1 N N N 127 U C2 C N N 128 U O2 O N N 129 U N3 N N N 130 U C4 C N N 131 U O4 O N N 132 U C5 C N N 133 U C6 C N N 134 U HOP3 H N N 135 U HOP2 H N N 136 U "H5'" H N N 137 U "H5''" H N N 138 U "H4'" H N N 139 U "H3'" H N N 140 U "HO3'" H N N 141 U "H2'" H N N 142 U "HO2'" H N N 143 U "H1'" H N N 144 U H3 H N N 145 U H5 H N N 146 U H6 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 205D 'double helix' 205D 'a-form double helix' 205D 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 12 1_555 -1.048 -0.131 -0.640 -19.871 -17.728 1.061 1 A_G1:C24_B A 1 ? B 24 ? 19 1 1 A G 2 1_555 B C 11 1_555 -0.653 -0.359 0.628 8.784 12.326 0.078 2 A_G2:C23_B A 2 ? B 23 ? 19 1 1 A A 3 1_555 B U 10 1_555 0.233 -0.162 -1.186 -16.973 -2.012 -3.247 3 A_A3:U22_B A 3 ? B 22 ? 20 1 1 A C 4 1_555 B G 9 1_555 0.084 -0.029 -0.201 -8.929 5.191 0.586 4 A_C4:G21_B A 4 ? B 21 ? 19 1 1 A U 5 1_555 B G 8 1_555 2.639 -0.574 -0.011 11.510 7.917 2.502 5 A_U5:G20_B A 5 ? B 20 ? 28 ? 1 A U 6 1_555 B U 7 1_555 1.425 -1.988 -0.689 7.292 -34.313 -1.768 6 A_U6:U19_B A 6 ? B 19 ? 16 1 1 A U 7 1_555 B U 6 1_555 -1.115 -1.629 0.397 2.527 -8.982 3.359 7 A_U7:U18_B A 7 ? B 18 ? 16 1 1 A G 8 1_555 B U 5 1_555 -2.344 -0.691 -0.862 -3.852 -18.966 -4.754 8 A_G8:U17_B A 8 ? B 17 ? 28 ? 1 A G 9 1_555 B C 4 1_555 -0.610 -0.279 -0.724 -22.548 19.674 -7.666 9 A_G9:C16_B A 9 ? B 16 ? 19 1 1 A U 10 1_555 B A 3 1_555 -0.177 0.039 0.320 -3.431 19.119 1.872 10 A_U10:A15_B A 10 ? B 15 ? 20 1 1 A C 11 1_555 B G 2 1_555 0.149 -0.178 0.600 -7.900 14.560 -1.063 11 A_C11:G14_B A 11 ? B 14 ? 19 1 1 A C 12 1_555 B G 1 1_555 0.340 0.209 -0.528 9.791 -9.800 -10.850 12 A_C12:G13_B A 12 ? B 13 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 12 1_555 A G 2 1_555 B C 11 1_555 -0.174 -1.463 2.703 -15.543 -6.370 36.956 -1.488 -1.276 2.763 -9.472 23.113 40.472 1 AA_G1G2:C23C24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A G 2 1_555 B C 11 1_555 A A 3 1_555 B U 10 1_555 -0.568 -2.141 4.077 13.447 14.071 34.469 -5.010 2.596 2.652 21.736 -20.771 39.439 2 AA_G2A3:U22C23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A A 3 1_555 B U 10 1_555 A C 4 1_555 B G 9 1_555 0.338 -1.657 3.105 -5.347 6.087 29.186 -4.270 -1.611 2.612 11.795 10.361 30.266 3 AA_A3C4:G21U22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A C 4 1_555 B G 9 1_555 A U 5 1_555 B G 8 1_555 0.873 -1.555 2.900 -0.532 -3.221 38.936 -1.975 -1.364 3.002 -4.822 0.796 39.068 4 AA_C4U5:G20G21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A U 5 1_555 B G 8 1_555 A U 6 1_555 B U 7 1_555 0.218 -1.330 2.997 17.240 20.536 24.618 -4.483 1.620 1.414 36.908 -30.985 36.247 5 AA_U5U6:U19G20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A U 6 1_555 B U 7 1_555 A U 7 1_555 B U 6 1_555 0.856 -1.614 3.161 -7.539 14.598 37.330 -3.711 -1.950 2.199 21.573 11.142 40.668 6 AA_U6U7:U18U19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A U 7 1_555 B U 6 1_555 A G 8 1_555 B U 5 1_555 -0.263 -2.205 3.526 7.832 6.342 19.219 -8.280 3.685 2.397 17.522 -21.637 21.679 7 AA_U7G8:U17U18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A G 8 1_555 B U 5 1_555 A G 9 1_555 B C 4 1_555 -0.579 -1.422 3.671 -10.556 23.554 37.923 -3.989 -0.219 2.500 32.113 14.392 45.605 8 AA_G8G9:C16U17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A G 9 1_555 B C 4 1_555 A U 10 1_555 B A 3 1_555 0.384 -1.393 3.144 -8.261 -4.623 34.659 -1.615 -1.779 3.128 -7.586 13.556 35.890 9 AA_G9U10:A15C16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A U 10 1_555 B A 3 1_555 A C 11 1_555 B G 2 1_555 0.579 -2.172 3.255 -2.181 12.221 32.538 -5.268 -1.261 2.274 20.888 3.728 34.766 10 AA_U10C11:G14A15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A C 11 1_555 B G 2 1_555 A C 12 1_555 B G 1 1_555 -0.474 -2.144 2.728 10.545 -2.403 32.175 -3.354 2.231 2.598 -4.192 -18.389 33.898 11 AA_C11C12:G13G14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 205D _atom_sites.fract_transf_matrix[1][1] 0.030826 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030826 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011699 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_