data_207D # _entry.id 207D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 207D pdb_0000207d 10.2210/pdb207d/pdb WWPDB D_1000177560 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1995-09-15 2 'Structure model' 1 1 2008-05-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-06-24 5 'Structure model' 2 0 2020-07-29 6 'Structure model' 2 1 2024-05-01 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' Other 8 4 'Structure model' 'Source and taxonomy' 9 5 'Structure model' Advisory 10 5 'Structure model' 'Atomic model' 11 5 'Structure model' 'Data collection' 12 5 'Structure model' 'Derived calculations' 13 5 'Structure model' 'Structure summary' 14 6 'Structure model' 'Data collection' 15 6 'Structure model' 'Database references' 16 6 'Structure model' 'Derived calculations' 17 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' database_PDB_caveat 3 4 'Structure model' ndb_struct_na_base_pair 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_entity_src_syn 6 4 'Structure model' pdbx_struct_assembly 7 4 'Structure model' pdbx_struct_assembly_prop 8 4 'Structure model' pdbx_struct_oper_list 9 4 'Structure model' struct_conn 10 4 'Structure model' struct_ref 11 4 'Structure model' struct_ref_seq 12 5 'Structure model' atom_site 13 5 'Structure model' chem_comp 14 5 'Structure model' database_PDB_caveat 15 5 'Structure model' entity 16 5 'Structure model' pdbx_branch_scheme 17 5 'Structure model' pdbx_chem_comp_identifier 18 5 'Structure model' pdbx_entity_branch 19 5 'Structure model' pdbx_entity_branch_descriptor 20 5 'Structure model' pdbx_entity_branch_link 21 5 'Structure model' pdbx_entity_branch_list 22 5 'Structure model' pdbx_entity_nonpoly 23 5 'Structure model' pdbx_nonpoly_scheme 24 5 'Structure model' pdbx_struct_assembly_gen 25 5 'Structure model' pdbx_struct_conn_angle 26 5 'Structure model' pdbx_validate_chiral 27 5 'Structure model' pdbx_validate_close_contact 28 5 'Structure model' struct_asym 29 5 'Structure model' struct_conn 30 5 'Structure model' struct_site 31 5 'Structure model' struct_site_gen 32 6 'Structure model' chem_comp 33 6 'Structure model' chem_comp_atom 34 6 'Structure model' chem_comp_bond 35 6 'Structure model' database_2 36 6 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.type' 2 4 'Structure model' '_ndb_struct_na_base_pair.propeller' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_atom_site.B_iso_or_equiv' 6 5 'Structure model' '_atom_site.Cartn_x' 7 5 'Structure model' '_atom_site.Cartn_y' 8 5 'Structure model' '_atom_site.Cartn_z' 9 5 'Structure model' '_atom_site.auth_asym_id' 10 5 'Structure model' '_atom_site.auth_atom_id' 11 5 'Structure model' '_atom_site.auth_comp_id' 12 5 'Structure model' '_atom_site.auth_seq_id' 13 5 'Structure model' '_atom_site.label_asym_id' 14 5 'Structure model' '_atom_site.label_atom_id' 15 5 'Structure model' '_atom_site.label_comp_id' 16 5 'Structure model' '_atom_site.label_entity_id' 17 5 'Structure model' '_atom_site.pdbx_PDB_ins_code' 18 5 'Structure model' '_atom_site.type_symbol' 19 5 'Structure model' '_chem_comp.name' 20 5 'Structure model' '_chem_comp.type' 21 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 27 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 28 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 29 5 'Structure model' '_pdbx_struct_conn_angle.value' 30 5 'Structure model' '_pdbx_validate_close_contact.PDB_ins_code_1' 31 5 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_1' 32 5 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_1' 33 5 'Structure model' '_struct_conn.pdbx_dist_value' 34 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 35 5 'Structure model' '_struct_conn.pdbx_ptnr1_PDB_ins_code' 36 5 'Structure model' '_struct_conn.pdbx_ptnr2_PDB_ins_code' 37 5 'Structure model' '_struct_conn.pdbx_value_order' 38 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 39 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 40 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 41 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 42 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 43 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 44 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 45 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 46 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 47 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 48 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 49 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 50 6 'Structure model' '_chem_comp.pdbx_synonyms' 51 6 'Structure model' '_database_2.pdbx_DOI' 52 6 'Structure model' '_database_2.pdbx_database_accession' 53 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 207D _pdbx_database_status.recvd_initial_deposition_date 1995-04-20 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sastry, M.' 1 'Fiala, R.' 2 'Patel, D.J.' 3 # _citation.id primary _citation.title 'Solution structure of mithramycin dimers bound to partially overlapping sites on DNA.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 251 _citation.page_first 674 _citation.page_last 689 _citation.year 1995 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7666419 _citation.pdbx_database_id_DOI 10.1006/jmbi.1995.0464 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sastry, M.' 1 ? primary 'Fiala, R.' 2 ? primary 'Patel, D.J.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*AP*GP*CP*TP*AP*GP*CP*TP*A)-3') ; 3044.017 2 ? ? ? ? 2 branched man 'beta-D-Olivopyranose-(1-3)-beta-D-Olivopyranose' 278.299 4 ? ? ? ? 3 branched syn '2,6-dideoxy-3-C-methyl-beta-D-ribo-hexopyranose-(1-3)-2,6-dideoxy-beta-D-galactopyranose-(1-3)-beta-D-Olivopyranose' 422.468 4 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 5 non-polymer syn '1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYROXY-7-METHYLANTHRACENE' 388.411 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DA)(DG)(DC)(DT)(DA)(DG)(DC)(DT)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TAGCTAGCTA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MAGNESIUM ION' MG 5 '1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYROXY-7-METHYLANTHRACENE' CRH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DG n 1 4 DC n 1 5 DT n 1 6 DA n 1 7 DG n 1 8 DC n 1 9 DT n 1 10 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'CHEMICALLY SYNTHESIZED' # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DOlib1-3DOlib1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[ad122m-1b_1-5]/1-1/a3-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2,6-deoxy-Glcp]{}}' LINUCS PDB-CARE ? 4 3 'WURCS=2.0/3,3,2/[ad122m-1b_1-5][ad112m-1b_1-5][ad622m-1b_1-5_3*C]/1-2-3/a3-b1_b3-c1' WURCS PDB2Glycan 1.1.0 5 3 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2-deoxy-Fucp]{[(3+1)][b-D-2,6-deoxy-Allp]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 DDA C1 O1 1 DDA O3 HO3 sing ? 2 3 2 DDL C1 O1 1 DDA O3 HO3 sing ? 3 3 3 MDA C1 O1 2 DDL O3 HO3 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CRH non-polymer . '1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYROXY-7-METHYLANTHRACENE' ? 'C21 H24 O7' 388.411 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DDA 'D-saccharide, beta linking' . beta-D-Olivopyranose ;beta-D-Olivose; 2,6-dideoxy-beta-D-arabino-hexopyranose; 2,6-dideoxy-beta-D-glucopyranose; 2,6-dideoxy-beta-D-mannopyranose; 2-deoxy-beta-D-quinovopyranose; 2-deoxy-beta-D-rhamnoopyranose; D-Olivose; Olivose; 2,6-DIDEOXY-BETA-D-GLUCOSE; 2,6-DIDEOXY-BETA-D-MANNOSE ; 'C6 H12 O4' 148.157 DDL 'D-saccharide, beta linking' . 2,6-dideoxy-beta-D-galactopyranose ;2,6-DIDEOXY-BETA-D-GALACTOSE; 2,6-DIDEOXY-BETA-D-TALOSE; 2,6-dideoxy-beta-D-lyxo-hexopyranose; 2-deoxy-beta-D-fucopyranose; 2,6-dideoxy-D-galactose; 2,6-dideoxy-galactose ; 'C6 H12 O4' 148.157 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 MDA 'D-saccharide, beta linking' . 2,6-dideoxy-3-C-methyl-beta-D-ribo-hexopyranose ;2,6-DIDEOXY-3 C-METHYL-D-RIBOPYRANOSIDE; 2,6-dideoxy-3-C-methyl-beta-D-ribo-hexose; 2,6-dideoxy-3-C-methyl-D-ribo-hexose; 2,6-dideoxy-3-C-methyl-ribo-hexose ; 'C7 H14 O4' 162.184 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DDA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DOlib DDA 'COMMON NAME' GMML 1.0 b-D-Olivopyranose DDA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-2,6-deoxy-Glcp DDA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Oli DDL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-2-deoxy-Fucp # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DA 2 2 2 DA A A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DA 10 10 10 DA A A . n B 1 1 DT 1 1 1 DT T B . n B 1 2 DA 2 2 2 DA A B . n B 1 3 DG 3 3 3 DG G B . n B 1 4 DC 4 4 4 DC C B . n B 1 5 DT 5 5 5 DT T B . n B 1 6 DA 6 6 6 DA A B . n B 1 7 DG 7 7 7 DG G B . n B 1 8 DC 8 8 8 DC C B . n B 1 9 DT 9 9 9 DT T B . n B 1 10 DA 10 10 10 DA A B . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 DDA 1 C DDA 1 ? DDA 12 n C 2 DDA 2 C DDA 2 ? DDA 11 n D 3 DDA 1 D DDA 1 ? DDA 14 n D 3 DDL 2 D DDL 2 ? DDL 14 n D 3 MDA 3 D MDA 3 ? MDA 14 n E 2 DDA 1 E DDA 1 ? DDA 26 n E 2 DDA 2 E DDA 2 ? DDA 25 n F 3 DDA 1 F DDA 1 ? DDA 28 n F 3 DDL 2 F DDL 2 ? DDL 28 n F 3 MDA 3 F MDA 3 ? MDA 28 n G 3 DDA 1 G DDA 1 ? DDA 18 n G 3 DDL 2 G DDL 2 ? DDL 18 n G 3 MDA 3 G MDA 3 ? MDA 18 n H 2 DDA 1 H DDA 1 ? DDA 16 n H 2 DDA 2 H DDA 2 ? DDA 15 n I 2 DDA 1 I DDA 1 ? DDA 22 n I 2 DDA 2 I DDA 2 ? DDA 21 n J 3 DDA 1 J DDA 1 ? DDA 24 n J 3 DDL 2 J DDL 2 ? DDL 24 n J 3 MDA 3 J MDA 3 ? MDA 24 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code K 4 MG 1 19 19 MG MG A . L 5 CRH 1 13 13 CRH CRH A . M 5 CRH 1 27 27 CRH CRH A . N 4 MG 1 29 29 MG MG B . O 5 CRH 1 17 17 CRH CRH B . P 5 CRH 1 23 23 CRH CRH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 X-PLOR phasing . ? 3 # _cell.entry_id 207D _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 207D _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 207D _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 207D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 207D _struct.title 'SOLUTION STRUCTURE OF MITHRAMYCIN DIMERS BOUND TO PARTIALLY OVERLAPPING SITES ON DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 207D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, DOUBLE HELIX, MITHRAMYCIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 2 ? I N N 2 ? J N N 3 ? K N N 4 ? L N N 5 ? M N N 5 ? N N N 4 ? O N N 5 ? P N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 207D _struct_ref.pdbx_db_accession 207D _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 207D A 1 ? 10 ? 207D 1 ? 10 ? 1 10 2 1 207D B 1 ? 10 ? 207D 1 ? 10 ? 1 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10480 ? 1 MORE 114 ? 1 'SSA (A^2)' 2380 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C DDA . O3 ? ? ? 1_555 C DDA . C1 ? ? C DDA 1 C DDA 2 1_555 ? ? ? ? ? ? ? 1.425 sing ? covale2 covale both ? D DDA . O3 ? ? ? 1_555 D DDL . C1 ? ? D DDA 1 D DDL 2 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale3 covale both ? D DDL . O3 ? ? ? 1_555 D MDA . C1 ? ? D DDL 2 D MDA 3 1_555 ? ? ? ? ? ? ? 1.407 ? ? covale4 covale both ? E DDA . O3 ? ? ? 1_555 E DDA . C1 ? ? E DDA 1 E DDA 2 1_555 ? ? ? ? ? ? ? 1.427 sing ? covale5 covale both ? F DDA . O3 ? ? ? 1_555 F DDL . C1 ? ? F DDA 1 F DDL 2 1_555 ? ? ? ? ? ? ? 1.439 ? ? covale6 covale both ? F DDL . O3 ? ? ? 1_555 F MDA . C1 ? ? F DDL 2 F MDA 3 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale7 covale both ? G DDA . O3 ? ? ? 1_555 G DDL . C1 ? ? G DDA 1 G DDL 2 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale8 covale both ? G DDL . O3 ? ? ? 1_555 G MDA . C1 ? ? G DDL 2 G MDA 3 1_555 ? ? ? ? ? ? ? 1.422 ? ? covale9 covale both ? H DDA . O3 ? ? ? 1_555 H DDA . C1 ? ? H DDA 1 H DDA 2 1_555 ? ? ? ? ? ? ? 1.427 sing ? covale10 covale both ? I DDA . O3 ? ? ? 1_555 I DDA . C1 ? ? I DDA 1 I DDA 2 1_555 ? ? ? ? ? ? ? 1.426 sing ? covale11 covale both ? J DDA . O3 ? ? ? 1_555 J DDL . C1 ? ? J DDA 1 J DDL 2 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale12 covale both ? J DDL . O3 ? ? ? 1_555 J MDA . C1 ? ? J DDL 2 J MDA 3 1_555 ? ? ? ? ? ? ? 1.407 ? ? metalc1 metalc ? ? L CRH . O1 ? ? ? 1_555 K MG . MG ? ? A CRH 13 A MG 19 1_555 ? ? ? ? ? ? ? 2.286 ? ? metalc2 metalc ? ? L CRH . O9 ? ? ? 1_555 K MG . MG ? ? A CRH 13 A MG 19 1_555 ? ? ? ? ? ? ? 1.796 ? ? metalc3 metalc ? ? K MG . MG ? ? ? 1_555 O CRH . O1 ? ? A MG 19 B CRH 17 1_555 ? ? ? ? ? ? ? 2.290 ? ? metalc4 metalc ? ? K MG . MG ? ? ? 1_555 O CRH . O9 ? ? A MG 19 B CRH 17 1_555 ? ? ? ? ? ? ? 1.912 ? ? metalc5 metalc ? ? M CRH . O1 ? ? ? 1_555 N MG . MG ? ? A CRH 27 B MG 29 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc6 metalc ? ? M CRH . O9 ? ? ? 1_555 N MG . MG ? ? A CRH 27 B MG 29 1_555 ? ? ? ? ? ? ? 1.913 ? ? metalc7 metalc ? ? P CRH . O1 ? ? ? 1_555 N MG . MG ? ? B CRH 23 B MG 29 1_555 ? ? ? ? ? ? ? 2.287 ? ? metalc8 metalc ? ? P CRH . O9 ? ? ? 1_555 N MG . MG ? ? B CRH 23 B MG 29 1_555 ? ? ? ? ? ? ? 1.795 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 1 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 1 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 2 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 2 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 4 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 4 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 4 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 7 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 7 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 7 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 9 B DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 9 B DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 10 B DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 10 B DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1 ? L CRH . ? A CRH 13 ? 1_555 MG ? K MG . ? A MG 19 ? 1_555 O9 ? L CRH . ? A CRH 13 ? 1_555 78.5 ? 2 O1 ? L CRH . ? A CRH 13 ? 1_555 MG ? K MG . ? A MG 19 ? 1_555 O1 ? O CRH . ? B CRH 17 ? 1_555 72.8 ? 3 O9 ? L CRH . ? A CRH 13 ? 1_555 MG ? K MG . ? A MG 19 ? 1_555 O1 ? O CRH . ? B CRH 17 ? 1_555 104.1 ? 4 O1 ? L CRH . ? A CRH 13 ? 1_555 MG ? K MG . ? A MG 19 ? 1_555 O9 ? O CRH . ? B CRH 17 ? 1_555 99.9 ? 5 O9 ? L CRH . ? A CRH 13 ? 1_555 MG ? K MG . ? A MG 19 ? 1_555 O9 ? O CRH . ? B CRH 17 ? 1_555 178.0 ? 6 O1 ? O CRH . ? B CRH 17 ? 1_555 MG ? K MG . ? A MG 19 ? 1_555 O9 ? O CRH . ? B CRH 17 ? 1_555 74.3 ? 7 O1 ? M CRH . ? A CRH 27 ? 1_555 MG ? N MG . ? B MG 29 ? 1_555 O9 ? M CRH . ? A CRH 27 ? 1_555 74.3 ? 8 O1 ? M CRH . ? A CRH 27 ? 1_555 MG ? N MG . ? B MG 29 ? 1_555 O1 ? P CRH . ? B CRH 23 ? 1_555 72.7 ? 9 O9 ? M CRH . ? A CRH 27 ? 1_555 MG ? N MG . ? B MG 29 ? 1_555 O1 ? P CRH . ? B CRH 23 ? 1_555 99.7 ? 10 O1 ? M CRH . ? A CRH 27 ? 1_555 MG ? N MG . ? B MG 29 ? 1_555 O9 ? P CRH . ? B CRH 23 ? 1_555 104.0 ? 11 O9 ? M CRH . ? A CRH 27 ? 1_555 MG ? N MG . ? B MG 29 ? 1_555 O9 ? P CRH . ? B CRH 23 ? 1_555 177.9 ? 12 O1 ? P CRH . ? B CRH 23 ? 1_555 MG ? N MG . ? B MG 29 ? 1_555 O9 ? P CRH . ? B CRH 23 ? 1_555 78.5 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O1 E DDA 1 ? ? C6 A CRH 27 ? ? 1.38 2 1 O1 H DDA 1 ? ? C6 B CRH 17 ? ? 1.38 3 1 O1 I DDA 1 ? ? C6 B CRH 23 ? ? 1.39 4 1 O1 C DDA 1 ? ? C6 A CRH 13 ? ? 1.39 5 1 O1 D DDA 1 ? ? C2 A CRH 13 ? ? 1.43 6 1 O1 J DDA 1 ? ? C2 B CRH 23 ? ? 1.43 7 1 O1 F DDA 1 ? ? C2 A CRH 27 ? ? 1.43 8 1 O1 G DDA 1 ? ? C2 B CRH 17 ? ? 1.43 9 2 O1 H DDA 1 ? ? C6 B CRH 17 ? ? 1.38 10 2 O1 E DDA 1 ? ? C6 A CRH 27 ? ? 1.38 11 2 O1 I DDA 1 ? ? C6 B CRH 23 ? ? 1.39 12 2 O1 C DDA 1 ? ? C6 A CRH 13 ? ? 1.39 13 2 O1 D DDA 1 ? ? C2 A CRH 13 ? ? 1.43 14 2 O1 J DDA 1 ? ? C2 B CRH 23 ? ? 1.43 15 2 O1 G DDA 1 ? ? C2 B CRH 17 ? ? 1.43 16 2 O1 F DDA 1 ? ? C2 A CRH 27 ? ? 1.43 17 3 O1 H DDA 1 ? ? C6 B CRH 17 ? ? 1.38 18 3 O1 E DDA 1 ? ? C6 A CRH 27 ? ? 1.38 19 3 O1 C DDA 1 ? ? C6 A CRH 13 ? ? 1.39 20 3 O1 I DDA 1 ? ? C6 B CRH 23 ? ? 1.39 21 3 O1 J DDA 1 ? ? C2 B CRH 23 ? ? 1.43 22 3 O1 D DDA 1 ? ? C2 A CRH 13 ? ? 1.43 23 3 O1 F DDA 1 ? ? C2 A CRH 27 ? ? 1.43 24 3 O1 G DDA 1 ? ? C2 B CRH 17 ? ? 1.43 25 4 O1 H DDA 1 ? ? C6 B CRH 17 ? ? 1.38 26 4 O1 E DDA 1 ? ? C6 A CRH 27 ? ? 1.38 27 4 O1 C DDA 1 ? ? C6 A CRH 13 ? ? 1.39 28 4 O1 I DDA 1 ? ? C6 B CRH 23 ? ? 1.39 29 4 O1 G DDA 1 ? ? C2 B CRH 17 ? ? 1.43 30 4 O1 F DDA 1 ? ? C2 A CRH 27 ? ? 1.43 31 4 O1 D DDA 1 ? ? C2 A CRH 13 ? ? 1.43 32 4 O1 J DDA 1 ? ? C2 B CRH 23 ? ? 1.43 33 5 O1 E DDA 1 ? ? C6 A CRH 27 ? ? 1.38 34 5 O1 H DDA 1 ? ? C6 B CRH 17 ? ? 1.38 35 5 O1 C DDA 1 ? ? C6 A CRH 13 ? ? 1.39 36 5 O1 I DDA 1 ? ? C6 B CRH 23 ? ? 1.39 37 5 O1 D DDA 1 ? ? C2 A CRH 13 ? ? 1.43 38 5 O1 J DDA 1 ? ? C2 B CRH 23 ? ? 1.43 39 5 O1 G DDA 1 ? ? C2 B CRH 17 ? ? 1.43 40 5 O1 F DDA 1 ? ? C2 A CRH 27 ? ? 1.43 41 6 O1 H DDA 1 ? ? C6 B CRH 17 ? ? 1.38 42 6 O1 E DDA 1 ? ? C6 A CRH 27 ? ? 1.38 43 6 O1 I DDA 1 ? ? C6 B CRH 23 ? ? 1.39 44 6 O1 C DDA 1 ? ? C6 A CRH 13 ? ? 1.39 45 6 O1 D DDA 1 ? ? C2 A CRH 13 ? ? 1.43 46 6 O1 J DDA 1 ? ? C2 B CRH 23 ? ? 1.43 47 6 O1 G DDA 1 ? ? C2 B CRH 17 ? ? 1.43 48 6 O1 F DDA 1 ? ? C2 A CRH 27 ? ? 1.43 49 7 O1 H DDA 1 ? ? C6 B CRH 17 ? ? 1.38 50 7 O1 E DDA 1 ? ? C6 A CRH 27 ? ? 1.38 51 7 O1 C DDA 1 ? ? C6 A CRH 13 ? ? 1.39 52 7 O1 I DDA 1 ? ? C6 B CRH 23 ? ? 1.39 53 7 O1 F DDA 1 ? ? C2 A CRH 27 ? ? 1.43 54 7 O1 G DDA 1 ? ? C2 B CRH 17 ? ? 1.43 55 7 O1 J DDA 1 ? ? C2 B CRH 23 ? ? 1.43 56 7 O1 D DDA 1 ? ? C2 A CRH 13 ? ? 1.43 57 8 O1 H DDA 1 ? ? C6 B CRH 17 ? ? 1.38 58 8 O1 E DDA 1 ? ? C6 A CRH 27 ? ? 1.38 59 8 O1 I DDA 1 ? ? C6 B CRH 23 ? ? 1.39 60 8 O1 C DDA 1 ? ? C6 A CRH 13 ? ? 1.39 61 8 O1 D DDA 1 ? ? C2 A CRH 13 ? ? 1.43 62 8 O1 J DDA 1 ? ? C2 B CRH 23 ? ? 1.43 63 8 O1 G DDA 1 ? ? C2 B CRH 17 ? ? 1.43 64 8 O1 F DDA 1 ? ? C2 A CRH 27 ? ? 1.43 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DT 1 ? ? C7 A DT 1 ? ? 1.534 1.496 0.038 0.006 N 2 1 C5 B DT 1 ? ? C7 B DT 1 ? ? 1.536 1.496 0.040 0.006 N 3 2 C5 A DT 1 ? ? C7 A DT 1 ? ? 1.534 1.496 0.038 0.006 N 4 2 C5 B DT 1 ? ? C7 B DT 1 ? ? 1.534 1.496 0.038 0.006 N 5 3 C5 A DT 1 ? ? C7 A DT 1 ? ? 1.535 1.496 0.039 0.006 N 6 3 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.533 1.496 0.037 0.006 N 7 3 C5 B DT 1 ? ? C7 B DT 1 ? ? 1.533 1.496 0.037 0.006 N 8 4 C5 A DT 1 ? ? C7 A DT 1 ? ? 1.534 1.496 0.038 0.006 N 9 4 C5 B DT 1 ? ? C7 B DT 1 ? ? 1.534 1.496 0.038 0.006 N 10 5 C5 A DT 1 ? ? C7 A DT 1 ? ? 1.534 1.496 0.038 0.006 N 11 5 C5 B DT 1 ? ? C7 B DT 1 ? ? 1.533 1.496 0.037 0.006 N 12 6 C5 A DT 1 ? ? C7 A DT 1 ? ? 1.533 1.496 0.037 0.006 N 13 6 C5 B DT 1 ? ? C7 B DT 1 ? ? 1.533 1.496 0.037 0.006 N 14 7 C5 A DT 1 ? ? C7 A DT 1 ? ? 1.533 1.496 0.037 0.006 N 15 7 C5 B DT 1 ? ? C7 B DT 1 ? ? 1.534 1.496 0.038 0.006 N 16 8 C5 A DT 1 ? ? C7 A DT 1 ? ? 1.535 1.496 0.039 0.006 N 17 8 C5 B DT 1 ? ? C7 B DT 1 ? ? 1.534 1.496 0.038 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.25 108.30 1.95 0.30 N 2 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.44 108.30 5.14 0.30 N 3 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 115.67 108.30 7.37 0.30 N 4 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.19 108.30 1.89 0.30 N 5 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 112.51 108.30 4.21 0.30 N 6 1 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.72 122.90 -4.18 0.60 N 7 1 "C1'" A DA 10 ? ? "O4'" A DA 10 ? ? "C4'" A DA 10 ? ? 103.84 110.10 -6.26 1.00 N 8 1 "O4'" B DA 2 ? ? "C1'" B DA 2 ? ? N9 B DA 2 ? ? 110.23 108.30 1.93 0.30 N 9 1 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 113.35 108.30 5.05 0.30 N 10 1 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1 B DC 4 ? ? 115.66 108.30 7.36 0.30 N 11 1 "O4'" B DT 5 ? ? "C1'" B DT 5 ? ? N1 B DT 5 ? ? 110.18 108.30 1.88 0.30 N 12 1 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 112.50 108.30 4.20 0.30 N 13 1 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.68 122.90 -4.22 0.60 N 14 1 "C1'" B DA 10 ? ? "O4'" B DA 10 ? ? "C4'" B DA 10 ? ? 103.87 110.10 -6.23 1.00 N 15 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? "C2'" A DG 3 ? ? 100.88 105.90 -5.02 0.80 N 16 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 114.81 108.30 6.51 0.30 N 17 2 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 115.64 108.30 7.34 0.30 N 18 2 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.45 108.30 2.15 0.30 N 19 2 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 112.36 108.30 4.06 0.30 N 20 2 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.64 122.90 -4.26 0.60 N 21 2 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? "C2'" B DG 3 ? ? 100.90 105.90 -5.00 0.80 N 22 2 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 114.80 108.30 6.50 0.30 N 23 2 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1 B DC 4 ? ? 115.55 108.30 7.25 0.30 N 24 2 "O4'" B DT 5 ? ? "C1'" B DT 5 ? ? N1 B DT 5 ? ? 110.45 108.30 2.15 0.30 N 25 2 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 112.35 108.30 4.05 0.30 N 26 2 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.74 122.90 -4.16 0.60 N 27 3 "C3'" A DT 1 ? ? "O3'" A DT 1 ? ? P A DA 2 ? ? 128.01 119.70 8.31 1.20 Y 28 3 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.56 108.30 5.26 0.30 N 29 3 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 114.20 108.30 5.90 0.30 N 30 3 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 112.38 108.30 4.08 0.30 N 31 3 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.76 122.90 -4.14 0.60 N 32 3 "C1'" A DA 10 ? ? "O4'" A DA 10 ? ? "C4'" A DA 10 ? ? 104.03 110.10 -6.07 1.00 N 33 3 "C3'" B DT 1 ? ? "O3'" B DT 1 ? ? P B DA 2 ? ? 128.07 119.70 8.37 1.20 Y 34 3 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 113.55 108.30 5.25 0.30 N 35 3 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1 B DC 4 ? ? 114.21 108.30 5.91 0.30 N 36 3 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 112.36 108.30 4.06 0.30 N 37 3 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.73 122.90 -4.17 0.60 N 38 3 "C1'" B DA 10 ? ? "O4'" B DA 10 ? ? "C4'" B DA 10 ? ? 104.04 110.10 -6.06 1.00 N 39 4 "C1'" A DG 3 ? ? "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? 103.88 110.10 -6.22 1.00 N 40 4 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 114.86 108.30 6.56 0.30 N 41 4 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 115.77 108.30 7.47 0.30 N 42 4 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.15 108.30 1.85 0.30 N 43 4 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.87 108.30 3.57 0.30 N 44 4 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.52 122.90 -4.38 0.60 N 45 4 "C1'" B DG 3 ? ? "O4'" B DG 3 ? ? "C4'" B DG 3 ? ? 103.89 110.10 -6.21 1.00 N 46 4 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 114.87 108.30 6.57 0.30 N 47 4 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1 B DC 4 ? ? 115.80 108.30 7.50 0.30 N 48 4 "O4'" B DT 5 ? ? "C1'" B DT 5 ? ? N1 B DT 5 ? ? 110.29 108.30 1.99 0.30 N 49 4 "C4'" B DC 8 ? ? "C3'" B DC 8 ? ? "C2'" B DC 8 ? ? 97.96 102.20 -4.24 0.70 N 50 4 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 111.80 108.30 3.50 0.30 N 51 4 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.55 122.90 -4.35 0.60 N 52 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? "C2'" A DG 3 ? ? 100.90 105.90 -5.00 0.80 N 53 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.61 108.30 3.31 0.30 N 54 5 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 113.83 108.30 5.53 0.30 N 55 5 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 113.27 108.30 4.97 0.30 N 56 5 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 112.13 108.30 3.83 0.30 N 57 5 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.66 122.90 -4.24 0.60 N 58 5 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? "C2'" B DG 3 ? ? 100.84 105.90 -5.06 0.80 N 59 5 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 111.68 108.30 3.38 0.30 N 60 5 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1 B DC 4 ? ? 113.83 108.30 5.53 0.30 N 61 5 "O4'" B DT 5 ? ? "C1'" B DT 5 ? ? N1 B DT 5 ? ? 113.26 108.30 4.96 0.30 N 62 5 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 112.18 108.30 3.88 0.30 N 63 5 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.65 122.90 -4.25 0.60 N 64 6 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.55 108.30 4.25 0.30 N 65 6 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 114.24 108.30 5.94 0.30 N 66 6 "C3'" A DC 4 ? ? "O3'" A DC 4 ? ? P A DT 5 ? ? 127.18 119.70 7.48 1.20 Y 67 6 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 114.18 108.30 5.88 0.30 N 68 6 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 112.03 108.30 3.73 0.30 N 69 6 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.70 122.90 -4.20 0.60 N 70 6 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 112.58 108.30 4.28 0.30 N 71 6 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1 B DC 4 ? ? 114.24 108.30 5.94 0.30 N 72 6 "C3'" B DC 4 ? ? "O3'" B DC 4 ? ? P B DT 5 ? ? 127.16 119.70 7.46 1.20 Y 73 6 "O4'" B DT 5 ? ? "C1'" B DT 5 ? ? N1 B DT 5 ? ? 114.12 108.30 5.82 0.30 N 74 6 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 112.00 108.30 3.70 0.30 N 75 6 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.64 122.90 -4.26 0.60 N 76 7 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.40 108.30 5.10 0.30 N 77 7 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 114.45 108.30 6.15 0.30 N 78 7 "C3'" A DC 4 ? ? "O3'" A DC 4 ? ? P A DT 5 ? ? 127.12 119.70 7.42 1.20 Y 79 7 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 113.84 108.30 5.54 0.30 N 80 7 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.75 108.30 2.45 0.30 N 81 7 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.54 122.90 -4.36 0.60 N 82 7 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 113.44 108.30 5.14 0.30 N 83 7 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1 B DC 4 ? ? 114.41 108.30 6.11 0.30 N 84 7 "C3'" B DC 4 ? ? "O3'" B DC 4 ? ? P B DT 5 ? ? 127.03 119.70 7.33 1.20 Y 85 7 "O4'" B DT 5 ? ? "C1'" B DT 5 ? ? N1 B DT 5 ? ? 113.86 108.30 5.56 0.30 N 86 7 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 110.78 108.30 2.48 0.30 N 87 7 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.57 122.90 -4.33 0.60 N 88 8 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.59 108.30 4.29 0.30 N 89 8 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 114.59 108.30 6.29 0.30 N 90 8 "C3'" A DC 4 ? ? "O3'" A DC 4 ? ? P A DT 5 ? ? 127.04 119.70 7.34 1.20 Y 91 8 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 114.56 108.30 6.26 0.30 N 92 8 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.95 108.30 3.65 0.30 N 93 8 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.54 122.90 -4.36 0.60 N 94 8 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 112.57 108.30 4.27 0.30 N 95 8 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1 B DC 4 ? ? 114.62 108.30 6.32 0.30 N 96 8 "C3'" B DC 4 ? ? "O3'" B DC 4 ? ? P B DT 5 ? ? 127.15 119.70 7.45 1.20 Y 97 8 "O4'" B DT 5 ? ? "C1'" B DT 5 ? ? N1 B DT 5 ? ? 114.52 108.30 6.22 0.30 N 98 8 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 111.92 108.30 3.62 0.30 N 99 8 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.65 122.90 -4.25 0.60 N # _pdbx_nmr_ensemble.entry_id 207D _pdbx_nmr_ensemble.conformers_calculated_total_number 8 _pdbx_nmr_ensemble.conformers_submitted_total_number 8 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_details.entry_id 207D _pdbx_nmr_details.text ;EACH MODEL CONTAINS FOUR MOLECULES OF MITHRAMYCIN (EACH WITH FORMULA C52 H75 O24, CHARGE -1) AND TWO MG++ CATIONS THAT COORDINATE TO TWO MITHRAMYCIN MOLECULES. IN THIS ENTRY MITHRAMYCIN IS PRESENTED AS HET GROUPS DDA-DDA-CHR- TSC. THE TSC RESIDUE IS COMPRISED OF THREE SACCHARIDE UNITS (DDA-DDL-MDA). THE HYDROPHILIC SIDE CHAIN AND THE A-B DISACCHARIDE OF MITHRAMYCIN MOLECULES ALONG WITH THE TERMINAL BASE PAIR IN THE DNA DUPLEX ARE NOT WELL DEFINED. ; # _pdbx_nmr_refine.entry_id 207D _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ;TWO STARTING STRUCTURES WERE OBTAINED BY MANUALLY DOCKING MITHRAMYCIN ON A FORM AND B FORM DNA. THESE WERE SUBSEQUENTLY REFINED BY DISTANCE-RESTRAINED MOLECULAR DYNAMICS USING A SET OF INTER-PROTON DISTANCES DERIVED FROM NMR DATA (40, 80, 120, 160, 250 MS NOESY EXPERIMENTS) AND DELTA DIHEDRAL ANGLES DERIVED FROM SIMULATION OF COSY CROSS PEAK PATTERNS. THE EIGHT DISTANCE RESTRAINED STRUCTURES WERE OBTAINED BY TAKING THE AVERAGE COORDINATES OF THE LAST 2.0 PS OF THE DYNAMICS DURING DISTANCE RESTRAINED DYNAMICS AND MINIMIZED. THE RMS DEVIATIONS FROM IDEAL GEOMETRY FOR THE EIGHT FINAL STRUCTURES ARE: BOND (ANG): MDL1 MDL2 MDL3 MDL4 MDL5 MDL6 MDL7 MDL8 0.009 0.009 0.009 0.008 0.009 0.009 0.009 0.009 ANGLE (DEG): MDL1 MDL2 MDL3 MDL4 MDL5 MDL6 MDL7 MDL8 2.627 2.630 2.631 2.636 2.621 2.638 2.664 2.652 IMPROPER(DEG): MDL1 MDL2 MDL3 MDL4 MDL5 MDL6 MDL7 MDL8 0.866 0.850 0.808 0.874 0.841 0.803 0.881 0.808 ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_software.name X-PLOR _pdbx_nmr_software.version ? _pdbx_nmr_software.classification refinement _pdbx_nmr_software.authors BRUNGER _pdbx_nmr_software.ordinal 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CRH C1 C N N 1 CRH C2 C N N 2 CRH C3 C N R 3 CRH C4 C N N 4 CRH C5 C Y N 5 CRH C6 C Y N 6 CRH C7 C Y N 7 CRH C8 C Y N 8 CRH C9 C Y N 9 CRH C10 C Y N 10 CRH C11 C Y N 11 CRH C12 C Y N 12 CRH C13 C Y N 13 CRH C14 C Y N 14 CRH C15 C N N 15 CRH O1 O N N 16 CRH O8 O N N 17 CRH O9 O N N 18 CRH "C1'" C N S 19 CRH "C2'" C N N 20 CRH "C3'" C N S 21 CRH "C4'" C N R 22 CRH C1M C N N 23 CRH C4M C N N 24 CRH "O1'" O N N 25 CRH "O2'" O N N 26 CRH "O3'" O N N 27 CRH "O4'" O N N 28 CRH H21 H N N 29 CRH H22 H N N 30 CRH H3 H N N 31 CRH H41 H N N 32 CRH H42 H N N 33 CRH H5 H N N 34 CRH H6 H N N 35 CRH H10 H N N 36 CRH H151 H N N 37 CRH H152 H N N 38 CRH H153 H N N 39 CRH HO8 H N N 40 CRH HO9 H N N 41 CRH "H1'" H N N 42 CRH "H3'" H N N 43 CRH "H4'" H N N 44 CRH "H1'1" H N N 45 CRH "H1'2" H N N 46 CRH "H1'3" H N N 47 CRH "H4'1" H N N 48 CRH "H4'2" H N N 49 CRH "H4'3" H N N 50 CRH HO3 H N N 51 CRH HO4 H N N 52 DA OP3 O N N 53 DA P P N N 54 DA OP1 O N N 55 DA OP2 O N N 56 DA "O5'" O N N 57 DA "C5'" C N N 58 DA "C4'" C N R 59 DA "O4'" O N N 60 DA "C3'" C N S 61 DA "O3'" O N N 62 DA "C2'" C N N 63 DA "C1'" C N R 64 DA N9 N Y N 65 DA C8 C Y N 66 DA N7 N Y N 67 DA C5 C Y N 68 DA C6 C Y N 69 DA N6 N N N 70 DA N1 N Y N 71 DA C2 C Y N 72 DA N3 N Y N 73 DA C4 C Y N 74 DA HOP3 H N N 75 DA HOP2 H N N 76 DA "H5'" H N N 77 DA "H5''" H N N 78 DA "H4'" H N N 79 DA "H3'" H N N 80 DA "HO3'" H N N 81 DA "H2'" H N N 82 DA "H2''" H N N 83 DA "H1'" H N N 84 DA H8 H N N 85 DA H61 H N N 86 DA H62 H N N 87 DA H2 H N N 88 DC OP3 O N N 89 DC P P N N 90 DC OP1 O N N 91 DC OP2 O N N 92 DC "O5'" O N N 93 DC "C5'" C N N 94 DC "C4'" C N R 95 DC "O4'" O N N 96 DC "C3'" C N S 97 DC "O3'" O N N 98 DC "C2'" C N N 99 DC "C1'" C N R 100 DC N1 N N N 101 DC C2 C N N 102 DC O2 O N N 103 DC N3 N N N 104 DC C4 C N N 105 DC N4 N N N 106 DC C5 C N N 107 DC C6 C N N 108 DC HOP3 H N N 109 DC HOP2 H N N 110 DC "H5'" H N N 111 DC "H5''" H N N 112 DC "H4'" H N N 113 DC "H3'" H N N 114 DC "HO3'" H N N 115 DC "H2'" H N N 116 DC "H2''" H N N 117 DC "H1'" H N N 118 DC H41 H N N 119 DC H42 H N N 120 DC H5 H N N 121 DC H6 H N N 122 DDA C1 C N R 123 DDA C2 C N N 124 DDA C3 C N R 125 DDA C4 C N S 126 DDA C5 C N R 127 DDA C6 C N N 128 DDA O5 O N N 129 DDA O1 O N N 130 DDA O3 O N N 131 DDA O4 O N N 132 DDA H1 H N N 133 DDA H21 H N N 134 DDA H22 H N N 135 DDA H3 H N N 136 DDA H4 H N N 137 DDA H5 H N N 138 DDA H61 H N N 139 DDA H62 H N N 140 DDA H63 H N N 141 DDA HO1 H N N 142 DDA HO3 H N N 143 DDA HO4 H N N 144 DDL C1 C N R 145 DDL C2 C N N 146 DDL C3 C N R 147 DDL C4 C N R 148 DDL C5 C N R 149 DDL C6 C N N 150 DDL O1 O N N 151 DDL O5 O N N 152 DDL O3 O N N 153 DDL O4 O N N 154 DDL H1 H N N 155 DDL H2 H N N 156 DDL H22 H N N 157 DDL H3 H N N 158 DDL H4 H N N 159 DDL H5 H N N 160 DDL H61 H N N 161 DDL H62 H N N 162 DDL H63 H N N 163 DDL HO1 H N N 164 DDL HO3 H N N 165 DDL HO4 H N N 166 DG OP3 O N N 167 DG P P N N 168 DG OP1 O N N 169 DG OP2 O N N 170 DG "O5'" O N N 171 DG "C5'" C N N 172 DG "C4'" C N R 173 DG "O4'" O N N 174 DG "C3'" C N S 175 DG "O3'" O N N 176 DG "C2'" C N N 177 DG "C1'" C N R 178 DG N9 N Y N 179 DG C8 C Y N 180 DG N7 N Y N 181 DG C5 C Y N 182 DG C6 C N N 183 DG O6 O N N 184 DG N1 N N N 185 DG C2 C N N 186 DG N2 N N N 187 DG N3 N N N 188 DG C4 C Y N 189 DG HOP3 H N N 190 DG HOP2 H N N 191 DG "H5'" H N N 192 DG "H5''" H N N 193 DG "H4'" H N N 194 DG "H3'" H N N 195 DG "HO3'" H N N 196 DG "H2'" H N N 197 DG "H2''" H N N 198 DG "H1'" H N N 199 DG H8 H N N 200 DG H1 H N N 201 DG H21 H N N 202 DG H22 H N N 203 DT OP3 O N N 204 DT P P N N 205 DT OP1 O N N 206 DT OP2 O N N 207 DT "O5'" O N N 208 DT "C5'" C N N 209 DT "C4'" C N R 210 DT "O4'" O N N 211 DT "C3'" C N S 212 DT "O3'" O N N 213 DT "C2'" C N N 214 DT "C1'" C N R 215 DT N1 N N N 216 DT C2 C N N 217 DT O2 O N N 218 DT N3 N N N 219 DT C4 C N N 220 DT O4 O N N 221 DT C5 C N N 222 DT C7 C N N 223 DT C6 C N N 224 DT HOP3 H N N 225 DT HOP2 H N N 226 DT "H5'" H N N 227 DT "H5''" H N N 228 DT "H4'" H N N 229 DT "H3'" H N N 230 DT "HO3'" H N N 231 DT "H2'" H N N 232 DT "H2''" H N N 233 DT "H1'" H N N 234 DT H3 H N N 235 DT H71 H N N 236 DT H72 H N N 237 DT H73 H N N 238 DT H6 H N N 239 MDA C1 C N R 240 MDA C2 C N N 241 MDA C3 C N S 242 MDA C4 C N R 243 MDA C5 C N R 244 MDA C6 C N N 245 MDA "C3'" C N N 246 MDA O1 O N N 247 MDA O5 O N N 248 MDA O3 O N N 249 MDA O4 O N N 250 MDA H1 H N N 251 MDA H2 H N N 252 MDA H22 H N N 253 MDA H4 H N N 254 MDA H5 H N N 255 MDA H61 H N N 256 MDA H62 H N N 257 MDA H63 H N N 258 MDA "H3'1" H N N 259 MDA "H3'2" H N N 260 MDA "H3'3" H N N 261 MDA HO1 H N N 262 MDA HO3 H N N 263 MDA HO4 H N N 264 MG MG MG N N 265 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CRH C1 C2 sing N N 1 CRH C1 C13 sing N N 2 CRH C1 O1 doub N N 3 CRH C2 C3 sing N N 4 CRH C2 H21 sing N N 5 CRH C2 H22 sing N N 6 CRH C3 C4 sing N N 7 CRH C3 "C1'" sing N N 8 CRH C3 H3 sing N N 9 CRH C4 C14 sing N N 10 CRH C4 H41 sing N N 11 CRH C4 H42 sing N N 12 CRH C5 C6 doub Y N 13 CRH C5 C11 sing Y N 14 CRH C5 H5 sing N N 15 CRH C6 C7 sing Y N 16 CRH C6 H6 sing N N 17 CRH C7 C8 doub Y N 18 CRH C7 C15 sing N N 19 CRH C8 C12 sing Y N 20 CRH C8 O8 sing N N 21 CRH C9 C12 doub Y N 22 CRH C9 C13 sing Y N 23 CRH C9 O9 sing N N 24 CRH C10 C11 doub Y N 25 CRH C10 C14 sing Y N 26 CRH C10 H10 sing N N 27 CRH C11 C12 sing Y N 28 CRH C13 C14 doub Y N 29 CRH C15 H151 sing N N 30 CRH C15 H152 sing N N 31 CRH C15 H153 sing N N 32 CRH O8 HO8 sing N N 33 CRH O9 HO9 sing N N 34 CRH "C1'" "C2'" sing N N 35 CRH "C1'" "O1'" sing N N 36 CRH "C1'" "H1'" sing N N 37 CRH "C2'" "C3'" sing N N 38 CRH "C2'" "O2'" doub N N 39 CRH "C3'" "C4'" sing N N 40 CRH "C3'" "O3'" sing N N 41 CRH "C3'" "H3'" sing N N 42 CRH "C4'" C4M sing N N 43 CRH "C4'" "O4'" sing N N 44 CRH "C4'" "H4'" sing N N 45 CRH C1M "O1'" sing N N 46 CRH C1M "H1'1" sing N N 47 CRH C1M "H1'2" sing N N 48 CRH C1M "H1'3" sing N N 49 CRH C4M "H4'1" sing N N 50 CRH C4M "H4'2" sing N N 51 CRH C4M "H4'3" sing N N 52 CRH "O3'" HO3 sing N N 53 CRH "O4'" HO4 sing N N 54 DA OP3 P sing N N 55 DA OP3 HOP3 sing N N 56 DA P OP1 doub N N 57 DA P OP2 sing N N 58 DA P "O5'" sing N N 59 DA OP2 HOP2 sing N N 60 DA "O5'" "C5'" sing N N 61 DA "C5'" "C4'" sing N N 62 DA "C5'" "H5'" sing N N 63 DA "C5'" "H5''" sing N N 64 DA "C4'" "O4'" sing N N 65 DA "C4'" "C3'" sing N N 66 DA "C4'" "H4'" sing N N 67 DA "O4'" "C1'" sing N N 68 DA "C3'" "O3'" sing N N 69 DA "C3'" "C2'" sing N N 70 DA "C3'" "H3'" sing N N 71 DA "O3'" "HO3'" sing N N 72 DA "C2'" "C1'" sing N N 73 DA "C2'" "H2'" sing N N 74 DA "C2'" "H2''" sing N N 75 DA "C1'" N9 sing N N 76 DA "C1'" "H1'" sing N N 77 DA N9 C8 sing Y N 78 DA N9 C4 sing Y N 79 DA C8 N7 doub Y N 80 DA C8 H8 sing N N 81 DA N7 C5 sing Y N 82 DA C5 C6 sing Y N 83 DA C5 C4 doub Y N 84 DA C6 N6 sing N N 85 DA C6 N1 doub Y N 86 DA N6 H61 sing N N 87 DA N6 H62 sing N N 88 DA N1 C2 sing Y N 89 DA C2 N3 doub Y N 90 DA C2 H2 sing N N 91 DA N3 C4 sing Y N 92 DC OP3 P sing N N 93 DC OP3 HOP3 sing N N 94 DC P OP1 doub N N 95 DC P OP2 sing N N 96 DC P "O5'" sing N N 97 DC OP2 HOP2 sing N N 98 DC "O5'" "C5'" sing N N 99 DC "C5'" "C4'" sing N N 100 DC "C5'" "H5'" sing N N 101 DC "C5'" "H5''" sing N N 102 DC "C4'" "O4'" sing N N 103 DC "C4'" "C3'" sing N N 104 DC "C4'" "H4'" sing N N 105 DC "O4'" "C1'" sing N N 106 DC "C3'" "O3'" sing N N 107 DC "C3'" "C2'" sing N N 108 DC "C3'" "H3'" sing N N 109 DC "O3'" "HO3'" sing N N 110 DC "C2'" "C1'" sing N N 111 DC "C2'" "H2'" sing N N 112 DC "C2'" "H2''" sing N N 113 DC "C1'" N1 sing N N 114 DC "C1'" "H1'" sing N N 115 DC N1 C2 sing N N 116 DC N1 C6 sing N N 117 DC C2 O2 doub N N 118 DC C2 N3 sing N N 119 DC N3 C4 doub N N 120 DC C4 N4 sing N N 121 DC C4 C5 sing N N 122 DC N4 H41 sing N N 123 DC N4 H42 sing N N 124 DC C5 C6 doub N N 125 DC C5 H5 sing N N 126 DC C6 H6 sing N N 127 DDA C1 C2 sing N N 128 DDA C1 O5 sing N N 129 DDA C1 O1 sing N N 130 DDA C1 H1 sing N N 131 DDA C2 C3 sing N N 132 DDA C2 H21 sing N N 133 DDA C2 H22 sing N N 134 DDA C3 C4 sing N N 135 DDA C3 O3 sing N N 136 DDA C3 H3 sing N N 137 DDA C4 C5 sing N N 138 DDA C4 O4 sing N N 139 DDA C4 H4 sing N N 140 DDA C5 C6 sing N N 141 DDA C5 O5 sing N N 142 DDA C5 H5 sing N N 143 DDA C6 H61 sing N N 144 DDA C6 H62 sing N N 145 DDA C6 H63 sing N N 146 DDA O1 HO1 sing N N 147 DDA O3 HO3 sing N N 148 DDA O4 HO4 sing N N 149 DDL C1 C2 sing N N 150 DDL C1 O1 sing N N 151 DDL C1 O5 sing N N 152 DDL C1 H1 sing N N 153 DDL C2 C3 sing N N 154 DDL C2 H2 sing N N 155 DDL C2 H22 sing N N 156 DDL C3 C4 sing N N 157 DDL C3 O3 sing N N 158 DDL C3 H3 sing N N 159 DDL C4 C5 sing N N 160 DDL C4 O4 sing N N 161 DDL C4 H4 sing N N 162 DDL C5 C6 sing N N 163 DDL C5 O5 sing N N 164 DDL C5 H5 sing N N 165 DDL C6 H61 sing N N 166 DDL C6 H62 sing N N 167 DDL C6 H63 sing N N 168 DDL O1 HO1 sing N N 169 DDL O3 HO3 sing N N 170 DDL O4 HO4 sing N N 171 DG OP3 P sing N N 172 DG OP3 HOP3 sing N N 173 DG P OP1 doub N N 174 DG P OP2 sing N N 175 DG P "O5'" sing N N 176 DG OP2 HOP2 sing N N 177 DG "O5'" "C5'" sing N N 178 DG "C5'" "C4'" sing N N 179 DG "C5'" "H5'" sing N N 180 DG "C5'" "H5''" sing N N 181 DG "C4'" "O4'" sing N N 182 DG "C4'" "C3'" sing N N 183 DG "C4'" "H4'" sing N N 184 DG "O4'" "C1'" sing N N 185 DG "C3'" "O3'" sing N N 186 DG "C3'" "C2'" sing N N 187 DG "C3'" "H3'" sing N N 188 DG "O3'" "HO3'" sing N N 189 DG "C2'" "C1'" sing N N 190 DG "C2'" "H2'" sing N N 191 DG "C2'" "H2''" sing N N 192 DG "C1'" N9 sing N N 193 DG "C1'" "H1'" sing N N 194 DG N9 C8 sing Y N 195 DG N9 C4 sing Y N 196 DG C8 N7 doub Y N 197 DG C8 H8 sing N N 198 DG N7 C5 sing Y N 199 DG C5 C6 sing N N 200 DG C5 C4 doub Y N 201 DG C6 O6 doub N N 202 DG C6 N1 sing N N 203 DG N1 C2 sing N N 204 DG N1 H1 sing N N 205 DG C2 N2 sing N N 206 DG C2 N3 doub N N 207 DG N2 H21 sing N N 208 DG N2 H22 sing N N 209 DG N3 C4 sing N N 210 DT OP3 P sing N N 211 DT OP3 HOP3 sing N N 212 DT P OP1 doub N N 213 DT P OP2 sing N N 214 DT P "O5'" sing N N 215 DT OP2 HOP2 sing N N 216 DT "O5'" "C5'" sing N N 217 DT "C5'" "C4'" sing N N 218 DT "C5'" "H5'" sing N N 219 DT "C5'" "H5''" sing N N 220 DT "C4'" "O4'" sing N N 221 DT "C4'" "C3'" sing N N 222 DT "C4'" "H4'" sing N N 223 DT "O4'" "C1'" sing N N 224 DT "C3'" "O3'" sing N N 225 DT "C3'" "C2'" sing N N 226 DT "C3'" "H3'" sing N N 227 DT "O3'" "HO3'" sing N N 228 DT "C2'" "C1'" sing N N 229 DT "C2'" "H2'" sing N N 230 DT "C2'" "H2''" sing N N 231 DT "C1'" N1 sing N N 232 DT "C1'" "H1'" sing N N 233 DT N1 C2 sing N N 234 DT N1 C6 sing N N 235 DT C2 O2 doub N N 236 DT C2 N3 sing N N 237 DT N3 C4 sing N N 238 DT N3 H3 sing N N 239 DT C4 O4 doub N N 240 DT C4 C5 sing N N 241 DT C5 C7 sing N N 242 DT C5 C6 doub N N 243 DT C7 H71 sing N N 244 DT C7 H72 sing N N 245 DT C7 H73 sing N N 246 DT C6 H6 sing N N 247 MDA C1 C2 sing N N 248 MDA C1 O1 sing N N 249 MDA C1 O5 sing N N 250 MDA C1 H1 sing N N 251 MDA C2 C3 sing N N 252 MDA C2 H2 sing N N 253 MDA C2 H22 sing N N 254 MDA C3 C4 sing N N 255 MDA C3 "C3'" sing N N 256 MDA C3 O3 sing N N 257 MDA C4 C5 sing N N 258 MDA C4 O4 sing N N 259 MDA C4 H4 sing N N 260 MDA C5 C6 sing N N 261 MDA C5 O5 sing N N 262 MDA C5 H5 sing N N 263 MDA C6 H61 sing N N 264 MDA C6 H62 sing N N 265 MDA C6 H63 sing N N 266 MDA "C3'" "H3'1" sing N N 267 MDA "C3'" "H3'2" sing N N 268 MDA "C3'" "H3'3" sing N N 269 MDA O1 HO1 sing N N 270 MDA O3 HO3 sing N N 271 MDA O4 HO4 sing N N 272 # _ndb_struct_conf_na.entry_id 207D _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 10 1_555 -0.462 -0.090 0.408 -17.920 -7.704 6.993 1 A_DT1:DA10_B A 1 ? B 10 ? 20 1 1 A DA 2 1_555 B DT 9 1_555 0.273 -0.141 -0.042 0.410 1.719 -3.757 2 A_DA2:DT9_B A 2 ? B 9 ? 20 1 1 A DG 3 1_555 B DC 8 1_555 -0.505 -0.247 0.077 11.558 -4.651 0.741 3 A_DG3:DC8_B A 3 ? B 8 ? 19 1 1 A DC 4 1_555 B DG 7 1_555 0.357 -0.134 0.046 -6.446 -15.186 3.448 4 A_DC4:DG7_B A 4 ? B 7 ? 19 1 1 A DT 5 1_555 B DA 6 1_555 -0.496 -0.137 0.062 -5.741 3.109 -5.093 5 A_DT5:DA6_B A 5 ? B 6 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 0.496 -0.137 0.062 5.755 3.113 -5.081 6 A_DA6:DT5_B A 6 ? B 5 ? 20 1 1 A DG 7 1_555 B DC 4 1_555 -0.359 -0.135 0.045 6.472 -15.194 3.462 7 A_DG7:DC4_B A 7 ? B 4 ? 19 1 1 A DC 8 1_555 B DG 3 1_555 0.503 -0.248 0.075 -11.537 -4.639 0.728 8 A_DC8:DG3_B A 8 ? B 3 ? 19 1 1 A DT 9 1_555 B DA 2 1_555 -0.274 -0.140 -0.042 -0.399 1.702 -3.761 9 A_DT9:DA2_B A 9 ? B 2 ? 20 1 1 A DA 10 1_555 B DT 1 1_555 0.461 -0.088 0.407 17.889 -7.737 6.984 10 A_DA10:DT1_B A 10 ? B 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 10 1_555 A DA 2 1_555 B DT 9 1_555 -0.796 -1.001 2.662 4.743 5.773 25.758 -3.294 2.648 2.210 12.615 -10.364 26.802 1 AA_DT1DA2:DT9DA10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A DA 2 1_555 B DT 9 1_555 A DG 3 1_555 B DC 8 1_555 1.390 -1.397 2.914 -2.853 0.044 27.101 -2.975 -3.570 2.753 0.093 6.066 27.248 2 AA_DA2DG3:DC8DT9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A DG 3 1_555 B DC 8 1_555 A DC 4 1_555 B DG 7 1_555 0.549 -1.552 3.529 0.966 3.539 33.103 -3.332 -0.787 3.364 6.188 -1.688 33.300 3 AA_DG3DC4:DG7DC8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A DC 4 1_555 B DG 7 1_555 A DT 5 1_555 B DA 6 1_555 -1.482 -1.327 3.145 1.396 4.639 29.497 -3.459 3.141 2.836 9.035 -2.718 29.883 4 AA_DC4DT5:DA6DG7_BB A 4 ? B 7 ? A 5 ? B 6 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 0.000 -1.080 2.890 -0.007 21.123 27.624 -4.355 -0.001 1.671 37.989 0.013 34.649 5 AA_DT5DA6:DT5DA6_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A DA 6 1_555 B DT 5 1_555 A DG 7 1_555 B DC 4 1_555 1.482 -1.327 3.145 -1.388 4.635 29.478 -3.462 -3.141 2.836 9.031 2.705 29.863 6 AA_DA6DG7:DC4DT5_BB A 6 ? B 5 ? A 7 ? B 4 ? 1 A DG 7 1_555 B DC 4 1_555 A DC 8 1_555 B DG 3 1_555 -0.549 -1.551 3.529 -0.964 3.546 33.114 -3.330 0.788 3.364 6.198 1.686 33.312 7 AA_DG7DC8:DG3DC4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A DC 8 1_555 B DG 3 1_555 A DT 9 1_555 B DA 2 1_555 -1.390 -1.397 2.914 2.841 0.025 27.113 -2.970 3.566 2.755 0.053 -6.040 27.258 8 AA_DC8DT9:DA2DG3_BB A 8 ? B 3 ? A 9 ? B 2 ? 1 A DT 9 1_555 B DA 2 1_555 A DA 10 1_555 B DT 1 1_555 0.796 -1.001 2.662 -4.724 5.785 25.757 -3.297 -2.645 2.210 12.642 10.324 26.800 9 AA_DT9DA10:DT1DA2_BB A 9 ? B 2 ? A 10 ? B 1 ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 DDA 1 n 2 DDA 2 n 3 DDA 1 n 3 DDL 2 n 3 MDA 3 n # _atom_sites.entry_id 207D _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H MG N O P # loop_