HEADER PROTEIN TRANSPORT 03-DEC-25 20ZE TITLE CRYSTAL STRUCTURE OF NICOTIANA BENTHAMIANA IMPORTIN ALPHA-BEET BLACK TITLE 2 SCORCH VIRUS CAPSID PROTEIN NLS PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: BEET BLACK SCORCH VIRUS CAPSID PROTEIN NLS PEPTIDE (MAJOR COMPND 3 BINDING SITE); COMPND 4 CHAIN: B, C, D, E; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: IMPORTIN SUBUNIT ALPHA; COMPND 8 CHAIN: A, F; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BEET BLACK SCORCH VIRUS; SOURCE 3 ORGANISM_TAXID: 196375; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: NICOTIANA BENTHAMIANA; SOURCE 8 ORGANISM_TAXID: 4100; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS NICOTIANA BENTHAMIANA IMPORTIN-ALPHA, BEET BLACK SCORCH VIRUS COAT KEYWDS 2 PROTEIN, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR Y.LIU,Z.CHEN REVDAT 1 08-JUL-26 20ZE 0 JRNL AUTH Y.LIU,Z.CHEN JRNL TITL CRYSTAL STRUCTURE OF NBIMPORTIN-ALPHA1 AND STRUCTURAL BASIS JRNL TITL 2 OF ITS INTERACTION WITH PLANT VIRUS NUCLEAR LOCALIZATION JRNL TITL 3 SIGNALS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 31906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1709 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2160 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6713 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 131 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : -4.66000 REMARK 3 B33 (A**2) : 4.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.572 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.266 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.236 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6848 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6642 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9305 ; 1.089 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15289 ; 0.788 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 873 ; 4.970 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 281 ;36.817 ;25.302 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1177 ;16.751 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;19.834 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1093 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7736 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1463 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3510 ; 1.439 ; 3.422 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3509 ; 1.435 ; 3.420 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4377 ; 2.493 ; 5.118 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4378 ; 2.493 ; 5.119 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3338 ; 1.513 ; 3.606 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3339 ; 1.513 ; 3.607 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4929 ; 2.632 ; 5.312 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7950 ; 4.510 ;26.878 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7941 ; 4.508 ;26.879 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 20ZE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 09-DEC-25. REMARK 100 THE DEPOSITION ID IS D_1300066812. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31906 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 100.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.09200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM CITRATE, 35% GLYCEROL REMARK 280 ETHOXYLATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.93200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 3 REMARK 465 LYS B 4 REMARK 465 ARG B 5 REMARK 465 ASN B 6 REMARK 465 LYS B 7 REMARK 465 GLY B 8 REMARK 465 SER C 12 REMARK 465 ARG C 13 REMARK 465 MET C 14 REMARK 465 GLU A 499 REMARK 465 ASP A 500 REMARK 465 ASP A 501 REMARK 465 GLU A 502 REMARK 465 GLN A 503 REMARK 465 LEU A 504 REMARK 465 PRO A 505 REMARK 465 SER A 506 REMARK 465 ALA A 507 REMARK 465 ASP A 508 REMARK 465 ALA A 509 REMARK 465 GLN A 510 REMARK 465 HIS A 511 REMARK 465 SER A 512 REMARK 465 GLY A 513 REMARK 465 PHE A 514 REMARK 465 ASN A 515 REMARK 465 PHE A 516 REMARK 465 GLY A 517 REMARK 465 GLY A 518 REMARK 465 GLY A 519 REMARK 465 GLU A 520 REMARK 465 LEU A 521 REMARK 465 PRO A 522 REMARK 465 LEU A 523 REMARK 465 PRO A 524 REMARK 465 SER A 525 REMARK 465 GLY A 526 REMARK 465 GLY A 527 REMARK 465 PHE A 528 REMARK 465 ASN A 529 REMARK 465 PHE A 530 REMARK 465 SER A 531 REMARK 465 SER A 532 REMARK 465 PRO D 3 REMARK 465 LYS D 4 REMARK 465 ARG D 5 REMARK 465 ASN D 6 REMARK 465 LYS D 7 REMARK 465 GLY D 8 REMARK 465 SER E 12 REMARK 465 ARG E 13 REMARK 465 MET E 14 REMARK 465 GLU F 498 REMARK 465 GLU F 499 REMARK 465 ASP F 500 REMARK 465 ASP F 501 REMARK 465 GLU F 502 REMARK 465 GLN F 503 REMARK 465 LEU F 504 REMARK 465 PRO F 505 REMARK 465 SER F 506 REMARK 465 ALA F 507 REMARK 465 ASP F 508 REMARK 465 ALA F 509 REMARK 465 GLN F 510 REMARK 465 HIS F 511 REMARK 465 SER F 512 REMARK 465 GLY F 513 REMARK 465 PHE F 514 REMARK 465 ASN F 515 REMARK 465 PHE F 516 REMARK 465 GLY F 517 REMARK 465 GLY F 518 REMARK 465 GLY F 519 REMARK 465 GLU F 520 REMARK 465 LEU F 521 REMARK 465 PRO F 522 REMARK 465 LEU F 523 REMARK 465 PRO F 524 REMARK 465 SER F 525 REMARK 465 GLY F 526 REMARK 465 GLY F 527 REMARK 465 PHE F 528 REMARK 465 ASN F 529 REMARK 465 PHE F 530 REMARK 465 SER F 531 REMARK 465 SER F 532 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 10 CG CD CE NZ REMARK 470 SER A 81 OG REMARK 470 SER A 88 OG REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 GLN A 115 OE1 NE2 REMARK 470 SER A 116 OG REMARK 470 LEU A 134 CD1 REMARK 470 GLU A 151 CG CD OE1 OE2 REMARK 470 MET A 219 CE REMARK 470 GLU A 244 CG CD OE1 OE2 REMARK 470 GLU A 258 OE1 OE2 REMARK 470 ASP A 277 OD1 OD2 REMARK 470 ASP A 317 OD1 OD2 REMARK 470 LYS A 343 CG CD CE NZ REMARK 470 GLU A 384 OE1 OE2 REMARK 470 GLU A 386 OE1 OE2 REMARK 470 LYS A 417 CE NZ REMARK 470 VAL A 424 CG2 REMARK 470 ASP A 450 CG OD1 OD2 REMARK 470 LEU A 451 CG CD1 CD2 REMARK 470 THR A 454 OG1 CG2 REMARK 470 GLN A 462 OE1 NE2 REMARK 470 ASP A 465 OD2 REMARK 470 GLU A 471 OE1 OE2 REMARK 470 THR A 482 CG2 REMARK 470 GLU A 483 CD OE1 OE2 REMARK 470 GLU A 486 OE1 OE2 REMARK 470 LYS A 487 CG CD CE NZ REMARK 470 MET D 14 CG SD CE REMARK 470 LYS E 10 CG CD CE NZ REMARK 470 GLU F 151 CG CD OE1 OE2 REMARK 470 MET F 219 CE REMARK 470 GLU F 384 OE1 OE2 REMARK 470 GLU F 386 OE1 OE2 REMARK 470 VAL F 424 CG2 REMARK 470 ARG F 429 CG CD NE CZ NH1 NH2 REMARK 470 LEU F 451 CG CD1 CD2 REMARK 470 ASN F 453 CG OD1 ND2 REMARK 470 THR F 454 OG1 CG2 REMARK 470 GLU F 455 CG CD OE1 OE2 REMARK 470 ASP F 465 OD2 REMARK 470 ASP F 480 CG OD1 OD2 REMARK 470 THR F 482 CG2 REMARK 470 GLU F 483 CD OE1 OE2 REMARK 470 GLU F 486 OE1 OE2 REMARK 470 LYS F 490 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 112 OD1 ASP F 277 2656 1.21 REMARK 500 OE2 GLU A 112 CG ASP F 277 2656 1.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 137 CD GLU A 137 OE1 -0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 454 -163.68 -101.72 REMARK 500 ASN F 453 -163.42 -104.31 REMARK 500 THR F 454 0.25 58.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 20ZE B 3 14 PDB 20ZE 20ZE 3 14 DBREF 20ZE C 3 14 PDB 20ZE 20ZE 3 14 DBREF 20ZE A 74 532 UNP A1YUL8 A1YUL8_NICBE 74 532 DBREF 20ZE D 3 14 PDB 20ZE 20ZE 3 14 DBREF 20ZE E 3 14 PDB 20ZE 20ZE 3 14 DBREF 20ZE F 74 532 UNP A1YUL8 A1YUL8_NICBE 74 532 SEQRES 1 B 12 PRO LYS ARG ASN LYS GLY GLY LYS LYS SER ARG MET SEQRES 1 C 12 PRO LYS ARG ASN LYS GLY GLY LYS LYS SER ARG MET SEQRES 1 A 459 GLU ASN LEU PRO ASP MET ILE SER GLY VAL TRP SER ASP SEQRES 2 A 459 ASP SER SER MET GLN LEU GLU CYS THR THR GLN PHE ARG SEQRES 3 A 459 LYS LEU LEU SER ILE GLU ARG ASN PRO PRO ILE GLU GLU SEQRES 4 A 459 VAL ILE GLN SER GLY VAL VAL PRO ARG PHE VAL GLU PHE SEQRES 5 A 459 LEU ALA ARG GLU ASP TYR PRO GLN LEU GLN PHE GLU ALA SEQRES 6 A 459 ALA TRP ALA LEU THR ASN ILE ALA SER GLY THR SER GLU SEQRES 7 A 459 ASN THR LYS VAL VAL ILE ASP TYR GLY SER VAL PRO ILE SEQRES 8 A 459 PHE VAL ARG LEU LEU SER SER PRO SER ASP ASP VAL ARG SEQRES 9 A 459 GLU GLN ALA VAL TRP ALA LEU GLY ASN ILE ALA GLY ASP SEQRES 10 A 459 SER PRO LYS TYR ARG ASP LEU VAL LEU GLY HIS GLY ALA SEQRES 11 A 459 LEU ALA PRO LEU LEU ALA GLN PHE ASN GLU HIS ALA LYS SEQRES 12 A 459 LEU SER MET LEU ARG ASN ALA THR TRP THR LEU SER ASN SEQRES 13 A 459 PHE CYS ARG GLY LYS PRO GLN PRO GLN PHE GLU GLN THR SEQRES 14 A 459 LYS GLU ALA LEU PRO THR LEU ALA ARG LEU ILE HIS SER SEQRES 15 A 459 ASN ASP GLU GLU VAL LEU THR ASP ALA CYS TRP ALA LEU SEQRES 16 A 459 SER TYR LEU SER ASP GLY THR ASN ASP LYS ILE GLN ALA SEQRES 17 A 459 VAL ILE GLU ALA GLY VAL CYS PRO ARG LEU ILE GLU LEU SEQRES 18 A 459 LEU LEU HIS SER SER PRO SER VAL LEU ILE PRO ALA LEU SEQRES 19 A 459 ARG THR VAL GLY ASN ILE VAL THR GLY ASP ASP ILE GLN SEQRES 20 A 459 THR GLN VAL ILE ILE ASP HIS HIS ALA LEU PRO CYS LEU SEQRES 21 A 459 LEU ASN LEU LEU THR GLN ASN TYR LYS LYS SER ILE LYS SEQRES 22 A 459 LYS GLU ALA CYS TRP THR ILE SER ASN ILE THR ALA GLY SEQRES 23 A 459 SER ARG ASN GLN ILE GLN ALA VAL ILE GLU ALA GLY ILE SEQRES 24 A 459 ILE ALA PRO LEU VAL HIS LEU LEU GLN ASN ALA GLU PHE SEQRES 25 A 459 GLU ILE LYS LYS GLU ALA ALA TRP ALA ILE SER ASN ALA SEQRES 26 A 459 THR SER GLY GLY ASN HIS ASP GLN ILE LYS PHE LEU VAL SEQRES 27 A 459 SER GLN GLY CYS ILE LYS PRO LEU CYS ASP LEU LEU VAL SEQRES 28 A 459 CYS PRO ASP PRO ARG ILE VAL THR VAL CYS LEU GLU GLY SEQRES 29 A 459 LEU GLU ASN ILE LEU LYS ILE GLY GLU ALA ASP LYS ASP SEQRES 30 A 459 LEU GLY ASN THR GLU GLY VAL ASN VAL TYR ALA GLN LEU SEQRES 31 A 459 ILE ASP GLU ALA GLU GLY LEU GLU LYS ILE GLU ASN LEU SEQRES 32 A 459 GLN SER HIS ASP ASN THR GLU ILE TYR GLU LYS ALA VAL SEQRES 33 A 459 LYS ILE LEU GLU THR TYR TRP LEU GLU GLU ASP ASP GLU SEQRES 34 A 459 GLN LEU PRO SER ALA ASP ALA GLN HIS SER GLY PHE ASN SEQRES 35 A 459 PHE GLY GLY GLY GLU LEU PRO LEU PRO SER GLY GLY PHE SEQRES 36 A 459 ASN PHE SER SER SEQRES 1 D 12 PRO LYS ARG ASN LYS GLY GLY LYS LYS SER ARG MET SEQRES 1 E 12 PRO LYS ARG ASN LYS GLY GLY LYS LYS SER ARG MET SEQRES 1 F 459 GLU ASN LEU PRO ASP MET ILE SER GLY VAL TRP SER ASP SEQRES 2 F 459 ASP SER SER MET GLN LEU GLU CYS THR THR GLN PHE ARG SEQRES 3 F 459 LYS LEU LEU SER ILE GLU ARG ASN PRO PRO ILE GLU GLU SEQRES 4 F 459 VAL ILE GLN SER GLY VAL VAL PRO ARG PHE VAL GLU PHE SEQRES 5 F 459 LEU ALA ARG GLU ASP TYR PRO GLN LEU GLN PHE GLU ALA SEQRES 6 F 459 ALA TRP ALA LEU THR ASN ILE ALA SER GLY THR SER GLU SEQRES 7 F 459 ASN THR LYS VAL VAL ILE ASP TYR GLY SER VAL PRO ILE SEQRES 8 F 459 PHE VAL ARG LEU LEU SER SER PRO SER ASP ASP VAL ARG SEQRES 9 F 459 GLU GLN ALA VAL TRP ALA LEU GLY ASN ILE ALA GLY ASP SEQRES 10 F 459 SER PRO LYS TYR ARG ASP LEU VAL LEU GLY HIS GLY ALA SEQRES 11 F 459 LEU ALA PRO LEU LEU ALA GLN PHE ASN GLU HIS ALA LYS SEQRES 12 F 459 LEU SER MET LEU ARG ASN ALA THR TRP THR LEU SER ASN SEQRES 13 F 459 PHE CYS ARG GLY LYS PRO GLN PRO GLN PHE GLU GLN THR SEQRES 14 F 459 LYS GLU ALA LEU PRO THR LEU ALA ARG LEU ILE HIS SER SEQRES 15 F 459 ASN ASP GLU GLU VAL LEU THR ASP ALA CYS TRP ALA LEU SEQRES 16 F 459 SER TYR LEU SER ASP GLY THR ASN ASP LYS ILE GLN ALA SEQRES 17 F 459 VAL ILE GLU ALA GLY VAL CYS PRO ARG LEU ILE GLU LEU SEQRES 18 F 459 LEU LEU HIS SER SER PRO SER VAL LEU ILE PRO ALA LEU SEQRES 19 F 459 ARG THR VAL GLY ASN ILE VAL THR GLY ASP ASP ILE GLN SEQRES 20 F 459 THR GLN VAL ILE ILE ASP HIS HIS ALA LEU PRO CYS LEU SEQRES 21 F 459 LEU ASN LEU LEU THR GLN ASN TYR LYS LYS SER ILE LYS SEQRES 22 F 459 LYS GLU ALA CYS TRP THR ILE SER ASN ILE THR ALA GLY SEQRES 23 F 459 SER ARG ASN GLN ILE GLN ALA VAL ILE GLU ALA GLY ILE SEQRES 24 F 459 ILE ALA PRO LEU VAL HIS LEU LEU GLN ASN ALA GLU PHE SEQRES 25 F 459 GLU ILE LYS LYS GLU ALA ALA TRP ALA ILE SER ASN ALA SEQRES 26 F 459 THR SER GLY GLY ASN HIS ASP GLN ILE LYS PHE LEU VAL SEQRES 27 F 459 SER GLN GLY CYS ILE LYS PRO LEU CYS ASP LEU LEU VAL SEQRES 28 F 459 CYS PRO ASP PRO ARG ILE VAL THR VAL CYS LEU GLU GLY SEQRES 29 F 459 LEU GLU ASN ILE LEU LYS ILE GLY GLU ALA ASP LYS ASP SEQRES 30 F 459 LEU GLY ASN THR GLU GLY VAL ASN VAL TYR ALA GLN LEU SEQRES 31 F 459 ILE ASP GLU ALA GLU GLY LEU GLU LYS ILE GLU ASN LEU SEQRES 32 F 459 GLN SER HIS ASP ASN THR GLU ILE TYR GLU LYS ALA VAL SEQRES 33 F 459 LYS ILE LEU GLU THR TYR TRP LEU GLU GLU ASP ASP GLU SEQRES 34 F 459 GLN LEU PRO SER ALA ASP ALA GLN HIS SER GLY PHE ASN SEQRES 35 F 459 PHE GLY GLY GLY GLU LEU PRO LEU PRO SER GLY GLY PHE SEQRES 36 F 459 ASN PHE SER SER FORMUL 7 HOH *131(H2 O) HELIX 1 AA1 ASN A 75 TRP A 84 1 10 HELIX 2 AA2 ASP A 87 SER A 103 1 17 HELIX 3 AA3 PRO A 109 GLY A 117 1 9 HELIX 4 AA4 VAL A 118 ALA A 127 1 10 HELIX 5 AA5 TYR A 131 ALA A 146 1 16 HELIX 6 AA6 THR A 149 TYR A 159 1 11 HELIX 7 AA7 GLY A 160 LEU A 168 1 9 HELIX 8 AA8 LEU A 169 SER A 171 5 3 HELIX 9 AA9 SER A 173 GLY A 189 1 17 HELIX 10 AB1 SER A 191 HIS A 201 1 11 HELIX 11 AB2 ALA A 203 GLN A 210 1 8 HELIX 12 AB3 LYS A 216 ARG A 232 1 17 HELIX 13 AB4 GLN A 238 LYS A 243 1 6 HELIX 14 AB5 ALA A 245 ILE A 253 1 9 HELIX 15 AB6 ASP A 257 SER A 272 1 16 HELIX 16 AB7 THR A 275 ALA A 285 1 11 HELIX 17 AB8 VAL A 287 LEU A 295 1 9 HELIX 18 AB9 SER A 299 VAL A 314 1 16 HELIX 19 AC1 ASP A 317 HIS A 327 1 11 HELIX 20 AC2 HIS A 328 GLN A 339 1 12 HELIX 21 AC3 LYS A 342 ALA A 358 1 17 HELIX 22 AC4 SER A 360 ALA A 370 1 11 HELIX 23 AC5 ILE A 372 ALA A 383 1 12 HELIX 24 AC6 GLU A 384 GLY A 402 1 19 HELIX 25 AC7 ASN A 403 GLN A 413 1 11 HELIX 26 AC8 CYS A 415 LEU A 422 1 8 HELIX 27 AC9 LEU A 423 CYS A 425 5 3 HELIX 28 AD1 ASP A 427 LEU A 451 1 25 HELIX 29 AD2 ASN A 458 ALA A 467 1 10 HELIX 30 AD3 GLU A 468 LEU A 476 1 9 HELIX 31 AD4 GLN A 477 HIS A 479 5 3 HELIX 32 AD5 ASN A 481 TRP A 496 1 16 HELIX 33 AD6 ASN F 75 TRP F 84 1 10 HELIX 34 AD7 ASP F 87 SER F 103 1 17 HELIX 35 AD8 PRO F 109 GLY F 117 1 9 HELIX 36 AD9 VAL F 118 ALA F 127 1 10 HELIX 37 AE1 TYR F 131 SER F 147 1 17 HELIX 38 AE2 THR F 149 TYR F 159 1 11 HELIX 39 AE3 GLY F 160 LEU F 169 1 10 HELIX 40 AE4 SER F 173 SER F 191 1 19 HELIX 41 AE5 SER F 191 HIS F 201 1 11 HELIX 42 AE6 ALA F 203 ALA F 209 1 7 HELIX 43 AE7 LYS F 216 ARG F 232 1 17 HELIX 44 AE8 GLN F 238 LYS F 243 1 6 HELIX 45 AE9 ALA F 245 ILE F 253 1 9 HELIX 46 AF1 ASP F 257 SER F 272 1 16 HELIX 47 AF2 THR F 275 ALA F 285 1 11 HELIX 48 AF3 VAL F 287 LEU F 294 1 8 HELIX 49 AF4 LEU F 295 HIS F 297 5 3 HELIX 50 AF5 SER F 299 VAL F 314 1 16 HELIX 51 AF6 ASP F 317 HIS F 327 1 11 HELIX 52 AF7 HIS F 328 GLN F 339 1 12 HELIX 53 AF8 LYS F 342 ALA F 358 1 17 HELIX 54 AF9 SER F 360 ALA F 370 1 11 HELIX 55 AG1 ILE F 372 ALA F 383 1 12 HELIX 56 AG2 GLU F 384 GLY F 402 1 19 HELIX 57 AG3 ASN F 403 GLN F 413 1 11 HELIX 58 AG4 CYS F 415 LEU F 422 1 8 HELIX 59 AG5 LEU F 423 CYS F 425 5 3 HELIX 60 AG6 ASP F 427 LEU F 451 1 25 HELIX 61 AG7 ASN F 453 VAL F 457 5 5 HELIX 62 AG8 ASN F 458 ALA F 467 1 10 HELIX 63 AG9 GLU F 468 LEU F 476 1 9 HELIX 64 AH1 GLN F 477 HIS F 479 5 3 HELIX 65 AH2 ASN F 481 TRP F 496 1 16 CISPEP 1 LYS A 234 PRO A 235 0 -0.06 CISPEP 2 LYS F 234 PRO F 235 0 2.08 CRYST1 62.946 77.864 100.187 90.00 89.88 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015887 0.000000 -0.000034 0.00000 SCALE2 0.000000 0.012843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009981 0.00000 MASTER 439 0 0 65 0 0 0 6 6844 6 0 76 END