HEADER IMMUNE SYSTEM 05-DEC-25 21AM TITLE CRYOEM STRUCTURE OF HGZMA-HGSDMBCTD COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRANZYME A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CTL TRYPTASE,CYTOTOXIC T-LYMPHOCYTE PROTEINASE 1,FRAGMENTIN- COMPND 5 1,GRANZYME-1,HANUKKAH FACTOR,H FACTOR,HF; COMPND 6 EC: 3.4.21.78; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GASDERMIN-B; COMPND 10 CHAIN: D, E; COMPND 11 SYNONYM: GASDERMIN-LIKE PROTEIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GZMA, CTLA3, HFSP; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL: HEK293F; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: GSDMB, GSDML, PP4052, PRO2521; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GRANZYME A, GASDERMIN B, PYROPTOSIS, IMMUNE SYSTEM EXPDTA ELECTRON MICROSCOPY AUTHOR X.ZHAO,S.LI,S.LI,K.ZHANG,Z.LIU REVDAT 1 09-SEP-26 21AM 0 JRNL AUTH X.ZHAO,K.ZHANG,Z.LIU JRNL TITL CRYOEM STRUCTURE OF HGZMA-HGSDMBCTD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, PHENIX, EPU, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.590 REMARK 3 NUMBER OF PARTICLES : 170536 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 21AM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 12-DEC-25. REMARK 100 THE DEPOSITION ID IS D_1300066851. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRYOEM STRUCTURE OF HGZMA REMARK 245 -HGSDMBCTD REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1300.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2900.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 176.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 261 REMARK 465 VAL A 262 REMARK 465 GLY A 263 REMARK 465 LYS A 264 REMARK 465 THR A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 ALA B 261 REMARK 465 VAL B 262 REMARK 465 GLY B 263 REMARK 465 LYS B 264 REMARK 465 THR B 265 REMARK 465 HIS B 266 REMARK 465 HIS B 267 REMARK 465 HIS B 268 REMARK 465 HIS B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 PHE D 2 REMARK 465 SER D 3 REMARK 465 VAL D 4 REMARK 465 PHE D 5 REMARK 465 GLU D 6 REMARK 465 GLU D 7 REMARK 465 ILE D 8 REMARK 465 THR D 9 REMARK 465 ARG D 10 REMARK 465 ILE D 11 REMARK 465 VAL D 12 REMARK 465 VAL D 13 REMARK 465 LYS D 14 REMARK 465 GLU D 15 REMARK 465 MET D 16 REMARK 465 ASP D 17 REMARK 465 ALA D 18 REMARK 465 GLY D 19 REMARK 465 GLY D 20 REMARK 465 ASP D 21 REMARK 465 MET D 22 REMARK 465 ILE D 23 REMARK 465 ALA D 24 REMARK 465 VAL D 25 REMARK 465 ARG D 26 REMARK 465 SER D 27 REMARK 465 LEU D 28 REMARK 465 VAL D 29 REMARK 465 ASP D 30 REMARK 465 ALA D 31 REMARK 465 ASP D 32 REMARK 465 ARG D 33 REMARK 465 PHE D 34 REMARK 465 ARG D 35 REMARK 465 CYS D 36 REMARK 465 PHE D 37 REMARK 465 HIS D 38 REMARK 465 LEU D 39 REMARK 465 VAL D 40 REMARK 465 GLY D 41 REMARK 465 GLU D 42 REMARK 465 LYS D 43 REMARK 465 ARG D 44 REMARK 465 THR D 45 REMARK 465 PHE D 46 REMARK 465 PHE D 47 REMARK 465 GLY D 48 REMARK 465 CYS D 49 REMARK 465 ARG D 50 REMARK 465 HIS D 51 REMARK 465 TYR D 52 REMARK 465 THR D 53 REMARK 465 THR D 54 REMARK 465 GLY D 55 REMARK 465 LEU D 56 REMARK 465 THR D 57 REMARK 465 LEU D 58 REMARK 465 MET D 59 REMARK 465 ASP D 60 REMARK 465 ILE D 61 REMARK 465 LEU D 62 REMARK 465 ASP D 63 REMARK 465 THR D 64 REMARK 465 ASP D 65 REMARK 465 GLY D 66 REMARK 465 ASP D 67 REMARK 465 LYS D 68 REMARK 465 TRP D 69 REMARK 465 LEU D 70 REMARK 465 ASP D 71 REMARK 465 GLU D 72 REMARK 465 LEU D 73 REMARK 465 ASP D 74 REMARK 465 SER D 75 REMARK 465 GLY D 76 REMARK 465 LEU D 77 REMARK 465 GLN D 78 REMARK 465 GLY D 79 REMARK 465 GLN D 80 REMARK 465 LYS D 81 REMARK 465 ALA D 82 REMARK 465 GLU D 83 REMARK 465 PHE D 84 REMARK 465 GLN D 85 REMARK 465 ILE D 86 REMARK 465 LEU D 87 REMARK 465 ASP D 88 REMARK 465 ASN D 89 REMARK 465 VAL D 90 REMARK 465 ASP D 91 REMARK 465 SER D 92 REMARK 465 THR D 93 REMARK 465 GLY D 94 REMARK 465 GLU D 95 REMARK 465 LEU D 96 REMARK 465 ILE D 97 REMARK 465 VAL D 98 REMARK 465 ARG D 99 REMARK 465 LEU D 100 REMARK 465 PRO D 101 REMARK 465 LYS D 102 REMARK 465 GLU D 103 REMARK 465 ILE D 104 REMARK 465 THR D 105 REMARK 465 ILE D 106 REMARK 465 SER D 107 REMARK 465 GLY D 108 REMARK 465 SER D 109 REMARK 465 PHE D 110 REMARK 465 GLN D 111 REMARK 465 GLY D 112 REMARK 465 PHE D 113 REMARK 465 HIS D 114 REMARK 465 HIS D 115 REMARK 465 GLN D 116 REMARK 465 LYS D 117 REMARK 465 ILE D 118 REMARK 465 LYS D 119 REMARK 465 ILE D 120 REMARK 465 SER D 121 REMARK 465 GLU D 122 REMARK 465 ASN D 123 REMARK 465 ARG D 124 REMARK 465 ILE D 125 REMARK 465 SER D 126 REMARK 465 GLN D 127 REMARK 465 GLN D 128 REMARK 465 TYR D 129 REMARK 465 LEU D 130 REMARK 465 ALA D 131 REMARK 465 THR D 132 REMARK 465 LEU D 133 REMARK 465 GLU D 134 REMARK 465 ASN D 135 REMARK 465 ARG D 136 REMARK 465 LYS D 137 REMARK 465 LEU D 138 REMARK 465 LYS D 139 REMARK 465 ARG D 140 REMARK 465 GLU D 141 REMARK 465 LEU D 142 REMARK 465 PRO D 143 REMARK 465 PHE D 144 REMARK 465 SER D 145 REMARK 465 PHE D 146 REMARK 465 ARG D 147 REMARK 465 SER D 148 REMARK 465 ILE D 149 REMARK 465 ASN D 150 REMARK 465 THR D 151 REMARK 465 ARG D 152 REMARK 465 GLU D 153 REMARK 465 ASN D 154 REMARK 465 LEU D 155 REMARK 465 TYR D 156 REMARK 465 LEU D 157 REMARK 465 VAL D 158 REMARK 465 THR D 159 REMARK 465 GLU D 160 REMARK 465 THR D 161 REMARK 465 LEU D 162 REMARK 465 GLU D 163 REMARK 465 THR D 164 REMARK 465 VAL D 165 REMARK 465 LYS D 166 REMARK 465 GLU D 167 REMARK 465 GLU D 168 REMARK 465 THR D 169 REMARK 465 LEU D 170 REMARK 465 LYS D 171 REMARK 465 SER D 172 REMARK 465 ASP D 173 REMARK 465 ARG D 174 REMARK 465 GLN D 175 REMARK 465 TYR D 176 REMARK 465 LYS D 177 REMARK 465 PHE D 178 REMARK 465 TRP D 179 REMARK 465 SER D 180 REMARK 465 GLN D 181 REMARK 465 ILE D 182 REMARK 465 SER D 183 REMARK 465 GLN D 184 REMARK 465 GLY D 185 REMARK 465 HIS D 186 REMARK 465 LEU D 187 REMARK 465 SER D 188 REMARK 465 TYR D 189 REMARK 465 LYS D 190 REMARK 465 HIS D 191 REMARK 465 LYS D 192 REMARK 465 GLY D 193 REMARK 465 GLN D 194 REMARK 465 ARG D 195 REMARK 465 GLU D 196 REMARK 465 VAL D 197 REMARK 465 THR D 198 REMARK 465 ILE D 199 REMARK 465 PRO D 200 REMARK 465 PRO D 201 REMARK 465 ASN D 202 REMARK 465 ARG D 203 REMARK 465 VAL D 204 REMARK 465 LEU D 205 REMARK 465 SER D 206 REMARK 465 TYR D 207 REMARK 465 ARG D 208 REMARK 465 VAL D 209 REMARK 465 LYS D 210 REMARK 465 GLN D 211 REMARK 465 LEU D 212 REMARK 465 VAL D 213 REMARK 465 PHE D 214 REMARK 465 PRO D 215 REMARK 465 ASN D 216 REMARK 465 LYS D 217 REMARK 465 GLU D 218 REMARK 465 THR D 219 REMARK 465 MET D 220 REMARK 465 ASN D 221 REMARK 465 ILE D 222 REMARK 465 HIS D 223 REMARK 465 PHE D 224 REMARK 465 ARG D 225 REMARK 465 GLY D 226 REMARK 465 LYS D 227 REMARK 465 THR D 228 REMARK 465 LYS D 229 REMARK 465 SER D 230 REMARK 465 PHE D 231 REMARK 465 PRO D 232 REMARK 465 GLU D 233 REMARK 465 GLU D 234 REMARK 465 LYS D 235 REMARK 465 ASP D 236 REMARK 465 GLY D 237 REMARK 465 ALA D 238 REMARK 465 SER D 239 REMARK 465 SER D 240 REMARK 465 CYS D 241 REMARK 465 LEU D 242 REMARK 465 GLY D 243 REMARK 465 LYS D 244 REMARK 465 SER D 245 REMARK 465 LEU D 246 REMARK 465 GLY D 247 REMARK 465 SER D 248 REMARK 465 GLU D 249 REMARK 465 ASP D 250 REMARK 465 SER D 251 REMARK 465 ARG D 252 REMARK 465 ASN D 253 REMARK 465 PRO D 411 REMARK 465 THR D 412 REMARK 465 SER D 413 REMARK 465 VAL D 414 REMARK 465 SER D 415 REMARK 465 SER D 416 REMARK 465 SER E 0 REMARK 465 MET E 1 REMARK 465 PHE E 2 REMARK 465 SER E 3 REMARK 465 VAL E 4 REMARK 465 PHE E 5 REMARK 465 GLU E 6 REMARK 465 GLU E 7 REMARK 465 ILE E 8 REMARK 465 THR E 9 REMARK 465 ARG E 10 REMARK 465 ILE E 11 REMARK 465 VAL E 12 REMARK 465 VAL E 13 REMARK 465 LYS E 14 REMARK 465 GLU E 15 REMARK 465 MET E 16 REMARK 465 ASP E 17 REMARK 465 ALA E 18 REMARK 465 GLY E 19 REMARK 465 GLY E 20 REMARK 465 ASP E 21 REMARK 465 MET E 22 REMARK 465 ILE E 23 REMARK 465 ALA E 24 REMARK 465 VAL E 25 REMARK 465 ARG E 26 REMARK 465 SER E 27 REMARK 465 LEU E 28 REMARK 465 VAL E 29 REMARK 465 ASP E 30 REMARK 465 ALA E 31 REMARK 465 ASP E 32 REMARK 465 ARG E 33 REMARK 465 PHE E 34 REMARK 465 ARG E 35 REMARK 465 CYS E 36 REMARK 465 PHE E 37 REMARK 465 HIS E 38 REMARK 465 LEU E 39 REMARK 465 VAL E 40 REMARK 465 GLY E 41 REMARK 465 GLU E 42 REMARK 465 LYS E 43 REMARK 465 ARG E 44 REMARK 465 THR E 45 REMARK 465 PHE E 46 REMARK 465 PHE E 47 REMARK 465 GLY E 48 REMARK 465 CYS E 49 REMARK 465 ARG E 50 REMARK 465 HIS E 51 REMARK 465 TYR E 52 REMARK 465 THR E 53 REMARK 465 THR E 54 REMARK 465 GLY E 55 REMARK 465 LEU E 56 REMARK 465 THR E 57 REMARK 465 LEU E 58 REMARK 465 MET E 59 REMARK 465 ASP E 60 REMARK 465 ILE E 61 REMARK 465 LEU E 62 REMARK 465 ASP E 63 REMARK 465 THR E 64 REMARK 465 ASP E 65 REMARK 465 GLY E 66 REMARK 465 ASP E 67 REMARK 465 LYS E 68 REMARK 465 TRP E 69 REMARK 465 LEU E 70 REMARK 465 ASP E 71 REMARK 465 GLU E 72 REMARK 465 LEU E 73 REMARK 465 ASP E 74 REMARK 465 SER E 75 REMARK 465 GLY E 76 REMARK 465 LEU E 77 REMARK 465 GLN E 78 REMARK 465 GLY E 79 REMARK 465 GLN E 80 REMARK 465 LYS E 81 REMARK 465 ALA E 82 REMARK 465 GLU E 83 REMARK 465 PHE E 84 REMARK 465 GLN E 85 REMARK 465 ILE E 86 REMARK 465 LEU E 87 REMARK 465 ASP E 88 REMARK 465 ASN E 89 REMARK 465 VAL E 90 REMARK 465 ASP E 91 REMARK 465 SER E 92 REMARK 465 THR E 93 REMARK 465 GLY E 94 REMARK 465 GLU E 95 REMARK 465 LEU E 96 REMARK 465 ILE E 97 REMARK 465 VAL E 98 REMARK 465 ARG E 99 REMARK 465 LEU E 100 REMARK 465 PRO E 101 REMARK 465 LYS E 102 REMARK 465 GLU E 103 REMARK 465 ILE E 104 REMARK 465 THR E 105 REMARK 465 ILE E 106 REMARK 465 SER E 107 REMARK 465 GLY E 108 REMARK 465 SER E 109 REMARK 465 PHE E 110 REMARK 465 GLN E 111 REMARK 465 GLY E 112 REMARK 465 PHE E 113 REMARK 465 HIS E 114 REMARK 465 HIS E 115 REMARK 465 GLN E 116 REMARK 465 LYS E 117 REMARK 465 ILE E 118 REMARK 465 LYS E 119 REMARK 465 ILE E 120 REMARK 465 SER E 121 REMARK 465 GLU E 122 REMARK 465 ASN E 123 REMARK 465 ARG E 124 REMARK 465 ILE E 125 REMARK 465 SER E 126 REMARK 465 GLN E 127 REMARK 465 GLN E 128 REMARK 465 TYR E 129 REMARK 465 LEU E 130 REMARK 465 ALA E 131 REMARK 465 THR E 132 REMARK 465 LEU E 133 REMARK 465 GLU E 134 REMARK 465 ASN E 135 REMARK 465 ARG E 136 REMARK 465 LYS E 137 REMARK 465 LEU E 138 REMARK 465 LYS E 139 REMARK 465 ARG E 140 REMARK 465 GLU E 141 REMARK 465 LEU E 142 REMARK 465 PRO E 143 REMARK 465 PHE E 144 REMARK 465 SER E 145 REMARK 465 PHE E 146 REMARK 465 ARG E 147 REMARK 465 SER E 148 REMARK 465 ILE E 149 REMARK 465 ASN E 150 REMARK 465 THR E 151 REMARK 465 ARG E 152 REMARK 465 GLU E 153 REMARK 465 ASN E 154 REMARK 465 LEU E 155 REMARK 465 TYR E 156 REMARK 465 LEU E 157 REMARK 465 VAL E 158 REMARK 465 THR E 159 REMARK 465 GLU E 160 REMARK 465 THR E 161 REMARK 465 LEU E 162 REMARK 465 GLU E 163 REMARK 465 THR E 164 REMARK 465 VAL E 165 REMARK 465 LYS E 166 REMARK 465 GLU E 167 REMARK 465 GLU E 168 REMARK 465 THR E 169 REMARK 465 LEU E 170 REMARK 465 LYS E 171 REMARK 465 SER E 172 REMARK 465 ASP E 173 REMARK 465 ARG E 174 REMARK 465 GLN E 175 REMARK 465 TYR E 176 REMARK 465 LYS E 177 REMARK 465 PHE E 178 REMARK 465 TRP E 179 REMARK 465 SER E 180 REMARK 465 GLN E 181 REMARK 465 ILE E 182 REMARK 465 SER E 183 REMARK 465 GLN E 184 REMARK 465 GLY E 185 REMARK 465 HIS E 186 REMARK 465 LEU E 187 REMARK 465 SER E 188 REMARK 465 TYR E 189 REMARK 465 LYS E 190 REMARK 465 HIS E 191 REMARK 465 LYS E 192 REMARK 465 GLY E 193 REMARK 465 GLN E 194 REMARK 465 ARG E 195 REMARK 465 GLU E 196 REMARK 465 VAL E 197 REMARK 465 THR E 198 REMARK 465 ILE E 199 REMARK 465 PRO E 200 REMARK 465 PRO E 201 REMARK 465 ASN E 202 REMARK 465 ARG E 203 REMARK 465 VAL E 204 REMARK 465 LEU E 205 REMARK 465 SER E 206 REMARK 465 TYR E 207 REMARK 465 ARG E 208 REMARK 465 VAL E 209 REMARK 465 LYS E 210 REMARK 465 GLN E 211 REMARK 465 LEU E 212 REMARK 465 VAL E 213 REMARK 465 PHE E 214 REMARK 465 PRO E 215 REMARK 465 ASN E 216 REMARK 465 LYS E 217 REMARK 465 GLU E 218 REMARK 465 THR E 219 REMARK 465 MET E 220 REMARK 465 ASN E 221 REMARK 465 ILE E 222 REMARK 465 HIS E 223 REMARK 465 PHE E 224 REMARK 465 ARG E 225 REMARK 465 GLY E 226 REMARK 465 LYS E 227 REMARK 465 THR E 228 REMARK 465 LYS E 229 REMARK 465 SER E 230 REMARK 465 PHE E 231 REMARK 465 PRO E 232 REMARK 465 GLU E 233 REMARK 465 GLU E 234 REMARK 465 LYS E 235 REMARK 465 ASP E 236 REMARK 465 GLY E 237 REMARK 465 ALA E 238 REMARK 465 SER E 239 REMARK 465 SER E 240 REMARK 465 CYS E 241 REMARK 465 LEU E 242 REMARK 465 GLY E 243 REMARK 465 LYS E 244 REMARK 465 SER E 245 REMARK 465 LEU E 246 REMARK 465 GLY E 247 REMARK 465 SER E 248 REMARK 465 GLU E 249 REMARK 465 ASP E 250 REMARK 465 SER E 251 REMARK 465 ARG E 252 REMARK 465 ASN E 253 REMARK 465 PRO E 411 REMARK 465 THR E 412 REMARK 465 SER E 413 REMARK 465 VAL E 414 REMARK 465 SER E 415 REMARK 465 SER E 416 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 228 -171.75 -170.25 REMARK 500 ASN A 232 19.99 59.66 REMARK 500 PHE B 228 -172.64 -171.54 REMARK 500 GLU D 309 35.43 -99.88 REMARK 500 ASP D 312 40.19 -100.75 REMARK 500 ASP E 312 35.47 -95.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-67514 RELATED DB: EMDB REMARK 900 CRYOEM STRUCTURE OF HGZMA-HGSDMBCTD DBREF 21AM A 29 262 UNP P12544 GRAA_HUMAN 29 262 DBREF 21AM B 29 262 UNP P12544 GRAA_HUMAN 29 262 DBREF 21AM D 1 416 UNP Q8TAX9 GSDMB_HUMAN 1 416 DBREF 21AM E 1 416 UNP Q8TAX9 GSDMB_HUMAN 1 416 SEQADV 21AM ALA A 212 UNP P12544 SER 212 ENGINEERED MUTATION SEQADV 21AM GLY A 263 UNP P12544 EXPRESSION TAG SEQADV 21AM LYS A 264 UNP P12544 EXPRESSION TAG SEQADV 21AM THR A 265 UNP P12544 EXPRESSION TAG SEQADV 21AM HIS A 266 UNP P12544 EXPRESSION TAG SEQADV 21AM HIS A 267 UNP P12544 EXPRESSION TAG SEQADV 21AM HIS A 268 UNP P12544 EXPRESSION TAG SEQADV 21AM HIS A 269 UNP P12544 EXPRESSION TAG SEQADV 21AM HIS A 270 UNP P12544 EXPRESSION TAG SEQADV 21AM HIS A 271 UNP P12544 EXPRESSION TAG SEQADV 21AM ALA B 212 UNP P12544 SER 212 ENGINEERED MUTATION SEQADV 21AM GLY B 263 UNP P12544 EXPRESSION TAG SEQADV 21AM LYS B 264 UNP P12544 EXPRESSION TAG SEQADV 21AM THR B 265 UNP P12544 EXPRESSION TAG SEQADV 21AM HIS B 266 UNP P12544 EXPRESSION TAG SEQADV 21AM HIS B 267 UNP P12544 EXPRESSION TAG SEQADV 21AM HIS B 268 UNP P12544 EXPRESSION TAG SEQADV 21AM HIS B 269 UNP P12544 EXPRESSION TAG SEQADV 21AM HIS B 270 UNP P12544 EXPRESSION TAG SEQADV 21AM HIS B 271 UNP P12544 EXPRESSION TAG SEQADV 21AM SER D 0 UNP Q8TAX9 EXPRESSION TAG SEQADV 21AM SER E 0 UNP Q8TAX9 EXPRESSION TAG SEQRES 1 A 243 ILE ILE GLY GLY ASN GLU VAL THR PRO HIS SER ARG PRO SEQRES 2 A 243 TYR MET VAL LEU LEU SER LEU ASP ARG LYS THR ILE CYS SEQRES 3 A 243 ALA GLY ALA LEU ILE ALA LYS ASP TRP VAL LEU THR ALA SEQRES 4 A 243 ALA HIS CYS ASN LEU ASN LYS ARG SER GLN VAL ILE LEU SEQRES 5 A 243 GLY ALA HIS SER ILE THR ARG GLU GLU PRO THR LYS GLN SEQRES 6 A 243 ILE MET LEU VAL LYS LYS GLU PHE PRO TYR PRO CYS TYR SEQRES 7 A 243 ASP PRO ALA THR ARG GLU GLY ASP LEU LYS LEU LEU GLN SEQRES 8 A 243 LEU MET GLU LYS ALA LYS ILE ASN LYS TYR VAL THR ILE SEQRES 9 A 243 LEU HIS LEU PRO LYS LYS GLY ASP ASP VAL LYS PRO GLY SEQRES 10 A 243 THR MET CYS GLN VAL ALA GLY TRP GLY ARG THR HIS ASN SEQRES 11 A 243 SER ALA SER TRP SER ASP THR LEU ARG GLU VAL ASN ILE SEQRES 12 A 243 THR ILE ILE ASP ARG LYS VAL CYS ASN ASP ARG ASN HIS SEQRES 13 A 243 TYR ASN PHE ASN PRO VAL ILE GLY MET ASN MET VAL CYS SEQRES 14 A 243 ALA GLY SER LEU ARG GLY GLY ARG ASP SER CYS ASN GLY SEQRES 15 A 243 ASP ALA GLY SER PRO LEU LEU CYS GLU GLY VAL PHE ARG SEQRES 16 A 243 GLY VAL THR SER PHE GLY LEU GLU ASN LYS CYS GLY ASP SEQRES 17 A 243 PRO ARG GLY PRO GLY VAL TYR ILE LEU LEU SER LYS LYS SEQRES 18 A 243 HIS LEU ASN TRP ILE ILE MET THR ILE LYS GLY ALA VAL SEQRES 19 A 243 GLY LYS THR HIS HIS HIS HIS HIS HIS SEQRES 1 B 243 ILE ILE GLY GLY ASN GLU VAL THR PRO HIS SER ARG PRO SEQRES 2 B 243 TYR MET VAL LEU LEU SER LEU ASP ARG LYS THR ILE CYS SEQRES 3 B 243 ALA GLY ALA LEU ILE ALA LYS ASP TRP VAL LEU THR ALA SEQRES 4 B 243 ALA HIS CYS ASN LEU ASN LYS ARG SER GLN VAL ILE LEU SEQRES 5 B 243 GLY ALA HIS SER ILE THR ARG GLU GLU PRO THR LYS GLN SEQRES 6 B 243 ILE MET LEU VAL LYS LYS GLU PHE PRO TYR PRO CYS TYR SEQRES 7 B 243 ASP PRO ALA THR ARG GLU GLY ASP LEU LYS LEU LEU GLN SEQRES 8 B 243 LEU MET GLU LYS ALA LYS ILE ASN LYS TYR VAL THR ILE SEQRES 9 B 243 LEU HIS LEU PRO LYS LYS GLY ASP ASP VAL LYS PRO GLY SEQRES 10 B 243 THR MET CYS GLN VAL ALA GLY TRP GLY ARG THR HIS ASN SEQRES 11 B 243 SER ALA SER TRP SER ASP THR LEU ARG GLU VAL ASN ILE SEQRES 12 B 243 THR ILE ILE ASP ARG LYS VAL CYS ASN ASP ARG ASN HIS SEQRES 13 B 243 TYR ASN PHE ASN PRO VAL ILE GLY MET ASN MET VAL CYS SEQRES 14 B 243 ALA GLY SER LEU ARG GLY GLY ARG ASP SER CYS ASN GLY SEQRES 15 B 243 ASP ALA GLY SER PRO LEU LEU CYS GLU GLY VAL PHE ARG SEQRES 16 B 243 GLY VAL THR SER PHE GLY LEU GLU ASN LYS CYS GLY ASP SEQRES 17 B 243 PRO ARG GLY PRO GLY VAL TYR ILE LEU LEU SER LYS LYS SEQRES 18 B 243 HIS LEU ASN TRP ILE ILE MET THR ILE LYS GLY ALA VAL SEQRES 19 B 243 GLY LYS THR HIS HIS HIS HIS HIS HIS SEQRES 1 D 417 SER MET PHE SER VAL PHE GLU GLU ILE THR ARG ILE VAL SEQRES 2 D 417 VAL LYS GLU MET ASP ALA GLY GLY ASP MET ILE ALA VAL SEQRES 3 D 417 ARG SER LEU VAL ASP ALA ASP ARG PHE ARG CYS PHE HIS SEQRES 4 D 417 LEU VAL GLY GLU LYS ARG THR PHE PHE GLY CYS ARG HIS SEQRES 5 D 417 TYR THR THR GLY LEU THR LEU MET ASP ILE LEU ASP THR SEQRES 6 D 417 ASP GLY ASP LYS TRP LEU ASP GLU LEU ASP SER GLY LEU SEQRES 7 D 417 GLN GLY GLN LYS ALA GLU PHE GLN ILE LEU ASP ASN VAL SEQRES 8 D 417 ASP SER THR GLY GLU LEU ILE VAL ARG LEU PRO LYS GLU SEQRES 9 D 417 ILE THR ILE SER GLY SER PHE GLN GLY PHE HIS HIS GLN SEQRES 10 D 417 LYS ILE LYS ILE SER GLU ASN ARG ILE SER GLN GLN TYR SEQRES 11 D 417 LEU ALA THR LEU GLU ASN ARG LYS LEU LYS ARG GLU LEU SEQRES 12 D 417 PRO PHE SER PHE ARG SER ILE ASN THR ARG GLU ASN LEU SEQRES 13 D 417 TYR LEU VAL THR GLU THR LEU GLU THR VAL LYS GLU GLU SEQRES 14 D 417 THR LEU LYS SER ASP ARG GLN TYR LYS PHE TRP SER GLN SEQRES 15 D 417 ILE SER GLN GLY HIS LEU SER TYR LYS HIS LYS GLY GLN SEQRES 16 D 417 ARG GLU VAL THR ILE PRO PRO ASN ARG VAL LEU SER TYR SEQRES 17 D 417 ARG VAL LYS GLN LEU VAL PHE PRO ASN LYS GLU THR MET SEQRES 18 D 417 ASN ILE HIS PHE ARG GLY LYS THR LYS SER PHE PRO GLU SEQRES 19 D 417 GLU LYS ASP GLY ALA SER SER CYS LEU GLY LYS SER LEU SEQRES 20 D 417 GLY SER GLU ASP SER ARG ASN MET LYS GLU LYS LEU GLU SEQRES 21 D 417 ASP MET GLU SER VAL LEU LYS ASP LEU THR GLU GLU LYS SEQRES 22 D 417 ARG LYS ASP VAL LEU ASN SER LEU ALA LYS CYS LEU GLY SEQRES 23 D 417 LYS GLU ASP ILE ARG GLN ASP LEU GLU GLN ARG VAL SER SEQRES 24 D 417 GLU VAL LEU ILE SER GLY GLU LEU HIS MET GLU ASP PRO SEQRES 25 D 417 ASP LYS PRO LEU LEU SER SER LEU PHE ASN ALA ALA GLY SEQRES 26 D 417 VAL LEU VAL GLU ALA ARG ALA LYS ALA ILE LEU ASP PHE SEQRES 27 D 417 LEU ASP ALA LEU LEU GLU LEU SER GLU GLU GLN GLN PHE SEQRES 28 D 417 VAL ALA GLU ALA LEU GLU LYS GLY THR LEU PRO LEU LEU SEQRES 29 D 417 LYS ASP GLN VAL LYS SER VAL MET GLU GLN ASN TRP ASP SEQRES 30 D 417 GLU LEU ALA SER SER PRO PRO ASP MET ASP TYR ASP PRO SEQRES 31 D 417 GLU ALA ARG ILE LEU CYS ALA LEU TYR VAL VAL VAL SER SEQRES 32 D 417 ILE LEU LEU GLU LEU ALA GLU GLY PRO THR SER VAL SER SEQRES 33 D 417 SER SEQRES 1 E 417 SER MET PHE SER VAL PHE GLU GLU ILE THR ARG ILE VAL SEQRES 2 E 417 VAL LYS GLU MET ASP ALA GLY GLY ASP MET ILE ALA VAL SEQRES 3 E 417 ARG SER LEU VAL ASP ALA ASP ARG PHE ARG CYS PHE HIS SEQRES 4 E 417 LEU VAL GLY GLU LYS ARG THR PHE PHE GLY CYS ARG HIS SEQRES 5 E 417 TYR THR THR GLY LEU THR LEU MET ASP ILE LEU ASP THR SEQRES 6 E 417 ASP GLY ASP LYS TRP LEU ASP GLU LEU ASP SER GLY LEU SEQRES 7 E 417 GLN GLY GLN LYS ALA GLU PHE GLN ILE LEU ASP ASN VAL SEQRES 8 E 417 ASP SER THR GLY GLU LEU ILE VAL ARG LEU PRO LYS GLU SEQRES 9 E 417 ILE THR ILE SER GLY SER PHE GLN GLY PHE HIS HIS GLN SEQRES 10 E 417 LYS ILE LYS ILE SER GLU ASN ARG ILE SER GLN GLN TYR SEQRES 11 E 417 LEU ALA THR LEU GLU ASN ARG LYS LEU LYS ARG GLU LEU SEQRES 12 E 417 PRO PHE SER PHE ARG SER ILE ASN THR ARG GLU ASN LEU SEQRES 13 E 417 TYR LEU VAL THR GLU THR LEU GLU THR VAL LYS GLU GLU SEQRES 14 E 417 THR LEU LYS SER ASP ARG GLN TYR LYS PHE TRP SER GLN SEQRES 15 E 417 ILE SER GLN GLY HIS LEU SER TYR LYS HIS LYS GLY GLN SEQRES 16 E 417 ARG GLU VAL THR ILE PRO PRO ASN ARG VAL LEU SER TYR SEQRES 17 E 417 ARG VAL LYS GLN LEU VAL PHE PRO ASN LYS GLU THR MET SEQRES 18 E 417 ASN ILE HIS PHE ARG GLY LYS THR LYS SER PHE PRO GLU SEQRES 19 E 417 GLU LYS ASP GLY ALA SER SER CYS LEU GLY LYS SER LEU SEQRES 20 E 417 GLY SER GLU ASP SER ARG ASN MET LYS GLU LYS LEU GLU SEQRES 21 E 417 ASP MET GLU SER VAL LEU LYS ASP LEU THR GLU GLU LYS SEQRES 22 E 417 ARG LYS ASP VAL LEU ASN SER LEU ALA LYS CYS LEU GLY SEQRES 23 E 417 LYS GLU ASP ILE ARG GLN ASP LEU GLU GLN ARG VAL SER SEQRES 24 E 417 GLU VAL LEU ILE SER GLY GLU LEU HIS MET GLU ASP PRO SEQRES 25 E 417 ASP LYS PRO LEU LEU SER SER LEU PHE ASN ALA ALA GLY SEQRES 26 E 417 VAL LEU VAL GLU ALA ARG ALA LYS ALA ILE LEU ASP PHE SEQRES 27 E 417 LEU ASP ALA LEU LEU GLU LEU SER GLU GLU GLN GLN PHE SEQRES 28 E 417 VAL ALA GLU ALA LEU GLU LYS GLY THR LEU PRO LEU LEU SEQRES 29 E 417 LYS ASP GLN VAL LYS SER VAL MET GLU GLN ASN TRP ASP SEQRES 30 E 417 GLU LEU ALA SER SER PRO PRO ASP MET ASP TYR ASP PRO SEQRES 31 E 417 GLU ALA ARG ILE LEU CYS ALA LEU TYR VAL VAL VAL SER SEQRES 32 E 417 ILE LEU LEU GLU LEU ALA GLU GLY PRO THR SER VAL SER SEQRES 33 E 417 SER HELIX 1 AA1 ASP A 175 ASN A 180 1 6 HELIX 2 AA2 SER A 247 ILE A 258 1 12 HELIX 3 AA3 ASP B 175 ASN B 180 1 6 HELIX 4 AA4 SER B 247 ILE B 258 1 12 HELIX 5 AA5 LYS D 255 ASP D 267 1 13 HELIX 6 AA6 THR D 269 LYS D 282 1 14 HELIX 7 AA7 LYS D 286 GLY D 304 1 19 HELIX 8 AA8 ASP D 312 PHE D 320 1 9 HELIX 9 AA9 VAL D 327 GLU D 343 1 17 HELIX 10 AB1 GLU D 346 GLY D 358 1 13 HELIX 11 AB2 THR D 359 LEU D 378 1 20 HELIX 12 AB3 ASP D 388 GLY D 410 1 23 HELIX 13 AB4 LYS E 255 ASP E 267 1 13 HELIX 14 AB5 THR E 269 LYS E 282 1 14 HELIX 15 AB6 LYS E 286 GLY E 304 1 19 HELIX 16 AB7 ASP E 312 PHE E 320 1 9 HELIX 17 AB8 VAL E 327 LEU E 344 1 18 HELIX 18 AB9 GLU E 346 LYS E 357 1 12 HELIX 19 AC1 THR E 359 LEU E 378 1 20 HELIX 20 AC2 ASP E 388 GLY E 410 1 23 SHEET 1 AA1 8 ASN A 33 GLU A 34 0 SHEET 2 AA1 8 ARG A 167 ILE A 174 -1 O GLU A 168 N ASN A 33 SHEET 3 AA1 8 MET A 195 GLY A 199 -1 O CYS A 197 N ILE A 174 SHEET 4 AA1 8 VAL A 242 LEU A 245 -1 O TYR A 243 N VAL A 196 SHEET 5 AA1 8 VAL A 221 PHE A 228 -1 N PHE A 228 O VAL A 242 SHEET 6 AA1 8 PRO A 215 CYS A 218 -1 N LEU A 216 O GLY A 224 SHEET 7 AA1 8 MET A 147 GLY A 152 -1 N GLN A 149 O LEU A 217 SHEET 8 AA1 8 ARG A 167 ILE A 174 -1 O ILE A 171 N CYS A 148 SHEET 1 AA2 7 GLN A 93 MET A 95 0 SHEET 2 AA2 7 GLN A 77 LEU A 80 -1 N LEU A 80 O GLN A 93 SHEET 3 AA2 7 MET A 43 SER A 47 -1 N LEU A 45 O ILE A 79 SHEET 4 AA2 7 ILE A 53 ALA A 60 -1 O CYS A 54 N LEU A 46 SHEET 5 AA2 7 TRP A 63 THR A 66 -1 O LEU A 65 N ALA A 57 SHEET 6 AA2 7 LYS A 116 LEU A 120 -1 O LYS A 116 N THR A 66 SHEET 7 AA2 7 VAL A 97 PRO A 102 -1 N LYS A 98 O GLN A 119 SHEET 1 AA3 8 ASN B 33 GLU B 34 0 SHEET 2 AA3 8 ARG B 167 ILE B 174 -1 O GLU B 168 N ASN B 33 SHEET 3 AA3 8 MET B 195 GLY B 199 -1 O CYS B 197 N ILE B 174 SHEET 4 AA3 8 VAL B 242 LEU B 245 -1 O TYR B 243 N VAL B 196 SHEET 5 AA3 8 VAL B 221 PHE B 228 -1 N PHE B 228 O VAL B 242 SHEET 6 AA3 8 PRO B 215 CYS B 218 -1 N LEU B 216 O ARG B 223 SHEET 7 AA3 8 MET B 147 GLY B 152 -1 N GLN B 149 O LEU B 217 SHEET 8 AA3 8 ARG B 167 ILE B 174 -1 O ILE B 171 N CYS B 148 SHEET 1 AA4 7 GLN B 93 MET B 95 0 SHEET 2 AA4 7 GLN B 77 LEU B 80 -1 N VAL B 78 O MET B 95 SHEET 3 AA4 7 MET B 43 SER B 47 -1 N LEU B 45 O ILE B 79 SHEET 4 AA4 7 CYS B 54 ALA B 60 -1 O CYS B 54 N LEU B 46 SHEET 5 AA4 7 TRP B 63 THR B 66 -1 O LEU B 65 N ALA B 57 SHEET 6 AA4 7 LYS B 116 LEU B 120 -1 O LYS B 116 N THR B 66 SHEET 7 AA4 7 VAL B 97 PRO B 102 -1 N LYS B 98 O GLN B 119 SSBOND 1 CYS A 54 CYS A 70 1555 1555 2.03 SSBOND 2 CYS A 105 CYS B 105 1555 1555 2.03 SSBOND 3 CYS A 148 CYS A 218 1555 1555 2.03 SSBOND 4 CYS A 179 CYS A 197 1555 1555 2.03 SSBOND 5 CYS A 208 CYS A 234 1555 1555 2.03 SSBOND 6 CYS B 54 CYS B 70 1555 1555 2.03 SSBOND 7 CYS B 148 CYS B 218 1555 1555 2.03 SSBOND 8 CYS B 179 CYS B 197 1555 1555 2.03 SSBOND 9 CYS B 208 CYS B 234 1555 1555 2.03 CISPEP 1 ASN A 188 PRO A 189 0 -5.02 CISPEP 2 ASN B 188 PRO B 189 0 -4.61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 202 316 CONECT 316 202 CONECT 600 2395 CONECT 939 1469 CONECT 1185 1332 CONECT 1332 1185 CONECT 1405 1590 CONECT 1469 939 CONECT 1590 1405 CONECT 1997 2111 CONECT 2111 1997 CONECT 2395 600 CONECT 2734 3264 CONECT 2980 3127 CONECT 3127 2980 CONECT 3200 3385 CONECT 3264 2734 CONECT 3385 3200 MASTER 671 0 0 20 30 0 0 6 6048 4 18 104 END