HEADER PROTEIN FIBRIL 06-DEC-25 21BQ TITLE CRYO-EM STRUCTURE OF EX VIVO SUP35 PRION FIBRILS FROM YEAST CARRYING TITLE 2 "STRONG" [PSI+] VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID OF YEAST PRION SUP35; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 OTHER_DETAILS: FIVE IDENTICAL SUP35 PRION DOMAIN CHAINS OF AN AMYLOID COMPND 5 FIBRIL WITH LEFT-HANDED HELICAL SYMMETRY. CHAINS IN THE AMYLOID ARE COMPND 6 RELATED BY STAGGERED DISPLACEMENTS AND ROTATIONS ALONG THE FIBRIL COMPND 7 AXIS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_TAXID: 4932; SOURCE 4 STRAIN: STRONG [PSI+] VARIANT STRAIN KEYWDS AMYLOID, PRION, YEAST, IN VIVO, NATURAL, PROTEIN FIBRIL EXPDTA ELECTRON MICROSCOPY AUTHOR Y.M.CHESNOKOV,A.D.BURTSEVA,A.A.DERGALEV,T.N.BAIMUKHAMETOV, AUTHOR 2 V.V.KUSHNIROV,V.O.POPOV,K.M.BOYKO REVDAT 1 22-JUL-26 21BQ 0 JRNL AUTH A.A.DERGALEV,Y.M.CHESNOKOV,A.D.BURTSEVA,V.V.KUSHNIROV, JRNL AUTH 2 K.M.BOYKO,V.O.POPOV JRNL TITL CRYOEM STRUCTURE OF EX VIVO EXTRACTED SUP35 PRION FIBRILS JRNL TITL 2 PROVIDES INSIGHTS INTO [PSI+] PRION PHENOTYPE DETERMINATION JRNL TITL 3 AND STABILITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOLO, SERIALEM, CTFFIND, PHENIX, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH MAP REMARK 3 CORRELATION REMARK 3 OVERALL ANISOTROPIC B VALUE : 59.700 REMARK 3 REMARK 3 FITTING PROCEDURE : A SINGLE PROTOMER WAS BUILT DE NOVO INTO THE REMARK 3 SHARPENED MAP IN COOT, WITH UNAMBIGUOUS SEQUENCE ASSIGNMENT. THE REMARK 3 BUILT PROTOMER WAS STACKED INTO A FIVE-LAYER SEGMENT BY RIGID- REMARK 3 BODY PLACEMENT IN UCSF CHIMERA, AND THE RESULTING MODEL WAS REMARK 3 REFINED IN PHENIX REAL-SPACE REFINE WITH NCS CONSTRAINTS BETWEEN REMARK 3 THE FIVE CHAINS AND INDIVIDUAL ADPS. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.700 REMARK 3 NUMBER OF PARTICLES : 50658 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 21BQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-25. REMARK 100 THE DEPOSITION ID IS D_1300066769. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : EX VIVO SUP35 PRION FIBRILS REMARK 245 FROM YEAST CARRYING STRONG [PSI+ REMARK 245 ] VARIANT REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.38 REMARK 245 SAMPLE SUPPORT DETAILS : 20 MA REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 0.01 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5200.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 81000 REMARK 245 CALIBRATED MAGNIFICATION : 57937 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : CS CORRECTED, 3X3 HOLES (2 REMARK 245 EXPOSURES PER HOLE) IMAGE-SHIFT DATA ACQUISITION STRATEGY REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 65 REMARK 465 ASP A 66 REMARK 465 ALA A 67 REMARK 465 GLY A 68 REMARK 465 TYR A 69 REMARK 465 GLN A 70 REMARK 465 GLN A 71 REMARK 465 GLN A 72 REMARK 465 TYR A 73 REMARK 465 ASN A 74 REMARK 465 PRO A 75 REMARK 465 GLN A 76 REMARK 465 GLY A 77 REMARK 465 GLY A 78 REMARK 465 TYR A 79 REMARK 465 GLN A 80 REMARK 465 GLN A 81 REMARK 465 TYR A 82 REMARK 465 ASN A 83 REMARK 465 PRO A 84 REMARK 465 GLN A 85 REMARK 465 GLY A 86 REMARK 465 GLY A 87 REMARK 465 TYR A 88 REMARK 465 GLN A 89 REMARK 465 GLN A 90 REMARK 465 GLN A 91 REMARK 465 PHE A 92 REMARK 465 ASN A 93 REMARK 465 PRO A 94 REMARK 465 GLN A 95 REMARK 465 GLY A 96 REMARK 465 ASP A 97 REMARK 465 ASP A 98 REMARK 465 ASP A 99 REMARK 465 ASN A 100 REMARK 465 GLU A 101 REMARK 465 ASP A 102 REMARK 465 SER A 103 REMARK 465 GLU A 104 REMARK 465 GLU A 105 REMARK 465 ASP A 106 REMARK 465 ASP A 107 REMARK 465 GLU A 108 REMARK 465 ASP A 109 REMARK 465 GLY A 110 REMARK 465 GLY A 111 REMARK 465 PRO A 112 REMARK 465 ARG A 113 REMARK 465 GLY A 114 REMARK 465 SER A 115 REMARK 465 ARG A 116 REMARK 465 ALA A 117 REMARK 465 ASN A 118 REMARK 465 ALA A 119 REMARK 465 THR A 120 REMARK 465 LYS A 121 REMARK 465 LYS A 122 REMARK 465 VAL A 123 REMARK 465 GLY A 124 REMARK 465 THR A 125 REMARK 465 LYS A 126 REMARK 465 PRO A 127 REMARK 465 ALA A 128 REMARK 465 GLU A 129 REMARK 465 SER A 130 REMARK 465 ASP A 131 REMARK 465 LYS A 132 REMARK 465 LYS A 133 REMARK 465 GLU A 134 REMARK 465 GLU A 135 REMARK 465 GLU A 136 REMARK 465 LYS A 137 REMARK 465 SER A 138 REMARK 465 ALA A 139 REMARK 465 GLU A 140 REMARK 465 THR A 141 REMARK 465 LYS A 142 REMARK 465 GLU A 143 REMARK 465 PRO A 144 REMARK 465 THR A 145 REMARK 465 LYS A 146 REMARK 465 GLU A 147 REMARK 465 PRO A 148 REMARK 465 THR A 149 REMARK 465 LYS A 150 REMARK 465 VAL A 151 REMARK 465 GLU A 152 REMARK 465 GLU A 153 REMARK 465 PRO A 154 REMARK 465 VAL A 155 REMARK 465 LYS A 156 REMARK 465 LYS A 157 REMARK 465 GLU A 158 REMARK 465 GLU A 159 REMARK 465 LYS A 160 REMARK 465 PRO B 65 REMARK 465 ASP B 66 REMARK 465 ALA B 67 REMARK 465 GLY B 68 REMARK 465 TYR B 69 REMARK 465 GLN B 70 REMARK 465 GLN B 71 REMARK 465 GLN B 72 REMARK 465 TYR B 73 REMARK 465 ASN B 74 REMARK 465 PRO B 75 REMARK 465 GLN B 76 REMARK 465 GLY B 77 REMARK 465 GLY B 78 REMARK 465 TYR B 79 REMARK 465 GLN B 80 REMARK 465 GLN B 81 REMARK 465 TYR B 82 REMARK 465 ASN B 83 REMARK 465 PRO B 84 REMARK 465 GLN B 85 REMARK 465 GLY B 86 REMARK 465 GLY B 87 REMARK 465 TYR B 88 REMARK 465 GLN B 89 REMARK 465 GLN B 90 REMARK 465 GLN B 91 REMARK 465 PHE B 92 REMARK 465 ASN B 93 REMARK 465 PRO B 94 REMARK 465 GLN B 95 REMARK 465 GLY B 96 REMARK 465 ASP B 97 REMARK 465 ASP B 98 REMARK 465 ASP B 99 REMARK 465 ASN B 100 REMARK 465 GLU B 101 REMARK 465 ASP B 102 REMARK 465 SER B 103 REMARK 465 GLU B 104 REMARK 465 GLU B 105 REMARK 465 ASP B 106 REMARK 465 ASP B 107 REMARK 465 GLU B 108 REMARK 465 ASP B 109 REMARK 465 GLY B 110 REMARK 465 GLY B 111 REMARK 465 PRO B 112 REMARK 465 ARG B 113 REMARK 465 GLY B 114 REMARK 465 SER B 115 REMARK 465 ARG B 116 REMARK 465 ALA B 117 REMARK 465 ASN B 118 REMARK 465 ALA B 119 REMARK 465 THR B 120 REMARK 465 LYS B 121 REMARK 465 LYS B 122 REMARK 465 VAL B 123 REMARK 465 GLY B 124 REMARK 465 THR B 125 REMARK 465 LYS B 126 REMARK 465 PRO B 127 REMARK 465 ALA B 128 REMARK 465 GLU B 129 REMARK 465 SER B 130 REMARK 465 ASP B 131 REMARK 465 LYS B 132 REMARK 465 LYS B 133 REMARK 465 GLU B 134 REMARK 465 GLU B 135 REMARK 465 GLU B 136 REMARK 465 LYS B 137 REMARK 465 SER B 138 REMARK 465 ALA B 139 REMARK 465 GLU B 140 REMARK 465 THR B 141 REMARK 465 LYS B 142 REMARK 465 GLU B 143 REMARK 465 PRO B 144 REMARK 465 THR B 145 REMARK 465 LYS B 146 REMARK 465 GLU B 147 REMARK 465 PRO B 148 REMARK 465 THR B 149 REMARK 465 LYS B 150 REMARK 465 VAL B 151 REMARK 465 GLU B 152 REMARK 465 GLU B 153 REMARK 465 PRO B 154 REMARK 465 VAL B 155 REMARK 465 LYS B 156 REMARK 465 LYS B 157 REMARK 465 GLU B 158 REMARK 465 GLU B 159 REMARK 465 LYS B 160 REMARK 465 PRO C 65 REMARK 465 ASP C 66 REMARK 465 ALA C 67 REMARK 465 GLY C 68 REMARK 465 TYR C 69 REMARK 465 GLN C 70 REMARK 465 GLN C 71 REMARK 465 GLN C 72 REMARK 465 TYR C 73 REMARK 465 ASN C 74 REMARK 465 PRO C 75 REMARK 465 GLN C 76 REMARK 465 GLY C 77 REMARK 465 GLY C 78 REMARK 465 TYR C 79 REMARK 465 GLN C 80 REMARK 465 GLN C 81 REMARK 465 TYR C 82 REMARK 465 ASN C 83 REMARK 465 PRO C 84 REMARK 465 GLN C 85 REMARK 465 GLY C 86 REMARK 465 GLY C 87 REMARK 465 TYR C 88 REMARK 465 GLN C 89 REMARK 465 GLN C 90 REMARK 465 GLN C 91 REMARK 465 PHE C 92 REMARK 465 ASN C 93 REMARK 465 PRO C 94 REMARK 465 GLN C 95 REMARK 465 GLY C 96 REMARK 465 ASP C 97 REMARK 465 ASP C 98 REMARK 465 ASP C 99 REMARK 465 ASN C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 SER C 103 REMARK 465 GLU C 104 REMARK 465 GLU C 105 REMARK 465 ASP C 106 REMARK 465 ASP C 107 REMARK 465 GLU C 108 REMARK 465 ASP C 109 REMARK 465 GLY C 110 REMARK 465 GLY C 111 REMARK 465 PRO C 112 REMARK 465 ARG C 113 REMARK 465 GLY C 114 REMARK 465 SER C 115 REMARK 465 ARG C 116 REMARK 465 ALA C 117 REMARK 465 ASN C 118 REMARK 465 ALA C 119 REMARK 465 THR C 120 REMARK 465 LYS C 121 REMARK 465 LYS C 122 REMARK 465 VAL C 123 REMARK 465 GLY C 124 REMARK 465 THR C 125 REMARK 465 LYS C 126 REMARK 465 PRO C 127 REMARK 465 ALA C 128 REMARK 465 GLU C 129 REMARK 465 SER C 130 REMARK 465 ASP C 131 REMARK 465 LYS C 132 REMARK 465 LYS C 133 REMARK 465 GLU C 134 REMARK 465 GLU C 135 REMARK 465 GLU C 136 REMARK 465 LYS C 137 REMARK 465 SER C 138 REMARK 465 ALA C 139 REMARK 465 GLU C 140 REMARK 465 THR C 141 REMARK 465 LYS C 142 REMARK 465 GLU C 143 REMARK 465 PRO C 144 REMARK 465 THR C 145 REMARK 465 LYS C 146 REMARK 465 GLU C 147 REMARK 465 PRO C 148 REMARK 465 THR C 149 REMARK 465 LYS C 150 REMARK 465 VAL C 151 REMARK 465 GLU C 152 REMARK 465 GLU C 153 REMARK 465 PRO C 154 REMARK 465 VAL C 155 REMARK 465 LYS C 156 REMARK 465 LYS C 157 REMARK 465 GLU C 158 REMARK 465 GLU C 159 REMARK 465 LYS C 160 REMARK 465 PRO D 65 REMARK 465 ASP D 66 REMARK 465 ALA D 67 REMARK 465 GLY D 68 REMARK 465 TYR D 69 REMARK 465 GLN D 70 REMARK 465 GLN D 71 REMARK 465 GLN D 72 REMARK 465 TYR D 73 REMARK 465 ASN D 74 REMARK 465 PRO D 75 REMARK 465 GLN D 76 REMARK 465 GLY D 77 REMARK 465 GLY D 78 REMARK 465 TYR D 79 REMARK 465 GLN D 80 REMARK 465 GLN D 81 REMARK 465 TYR D 82 REMARK 465 ASN D 83 REMARK 465 PRO D 84 REMARK 465 GLN D 85 REMARK 465 GLY D 86 REMARK 465 GLY D 87 REMARK 465 TYR D 88 REMARK 465 GLN D 89 REMARK 465 GLN D 90 REMARK 465 GLN D 91 REMARK 465 PHE D 92 REMARK 465 ASN D 93 REMARK 465 PRO D 94 REMARK 465 GLN D 95 REMARK 465 GLY D 96 REMARK 465 ASP D 97 REMARK 465 ASP D 98 REMARK 465 ASP D 99 REMARK 465 ASN D 100 REMARK 465 GLU D 101 REMARK 465 ASP D 102 REMARK 465 SER D 103 REMARK 465 GLU D 104 REMARK 465 GLU D 105 REMARK 465 ASP D 106 REMARK 465 ASP D 107 REMARK 465 GLU D 108 REMARK 465 ASP D 109 REMARK 465 GLY D 110 REMARK 465 GLY D 111 REMARK 465 PRO D 112 REMARK 465 ARG D 113 REMARK 465 GLY D 114 REMARK 465 SER D 115 REMARK 465 ARG D 116 REMARK 465 ALA D 117 REMARK 465 ASN D 118 REMARK 465 ALA D 119 REMARK 465 THR D 120 REMARK 465 LYS D 121 REMARK 465 LYS D 122 REMARK 465 VAL D 123 REMARK 465 GLY D 124 REMARK 465 THR D 125 REMARK 465 LYS D 126 REMARK 465 PRO D 127 REMARK 465 ALA D 128 REMARK 465 GLU D 129 REMARK 465 SER D 130 REMARK 465 ASP D 131 REMARK 465 LYS D 132 REMARK 465 LYS D 133 REMARK 465 GLU D 134 REMARK 465 GLU D 135 REMARK 465 GLU D 136 REMARK 465 LYS D 137 REMARK 465 SER D 138 REMARK 465 ALA D 139 REMARK 465 GLU D 140 REMARK 465 THR D 141 REMARK 465 LYS D 142 REMARK 465 GLU D 143 REMARK 465 PRO D 144 REMARK 465 THR D 145 REMARK 465 LYS D 146 REMARK 465 GLU D 147 REMARK 465 PRO D 148 REMARK 465 THR D 149 REMARK 465 LYS D 150 REMARK 465 VAL D 151 REMARK 465 GLU D 152 REMARK 465 GLU D 153 REMARK 465 PRO D 154 REMARK 465 VAL D 155 REMARK 465 LYS D 156 REMARK 465 LYS D 157 REMARK 465 GLU D 158 REMARK 465 GLU D 159 REMARK 465 LYS D 160 REMARK 465 PRO E 65 REMARK 465 ASP E 66 REMARK 465 ALA E 67 REMARK 465 GLY E 68 REMARK 465 TYR E 69 REMARK 465 GLN E 70 REMARK 465 GLN E 71 REMARK 465 GLN E 72 REMARK 465 TYR E 73 REMARK 465 ASN E 74 REMARK 465 PRO E 75 REMARK 465 GLN E 76 REMARK 465 GLY E 77 REMARK 465 GLY E 78 REMARK 465 TYR E 79 REMARK 465 GLN E 80 REMARK 465 GLN E 81 REMARK 465 TYR E 82 REMARK 465 ASN E 83 REMARK 465 PRO E 84 REMARK 465 GLN E 85 REMARK 465 GLY E 86 REMARK 465 GLY E 87 REMARK 465 TYR E 88 REMARK 465 GLN E 89 REMARK 465 GLN E 90 REMARK 465 GLN E 91 REMARK 465 PHE E 92 REMARK 465 ASN E 93 REMARK 465 PRO E 94 REMARK 465 GLN E 95 REMARK 465 GLY E 96 REMARK 465 ASP E 97 REMARK 465 ASP E 98 REMARK 465 ASP E 99 REMARK 465 ASN E 100 REMARK 465 GLU E 101 REMARK 465 ASP E 102 REMARK 465 SER E 103 REMARK 465 GLU E 104 REMARK 465 GLU E 105 REMARK 465 ASP E 106 REMARK 465 ASP E 107 REMARK 465 GLU E 108 REMARK 465 ASP E 109 REMARK 465 GLY E 110 REMARK 465 GLY E 111 REMARK 465 PRO E 112 REMARK 465 ARG E 113 REMARK 465 GLY E 114 REMARK 465 SER E 115 REMARK 465 ARG E 116 REMARK 465 ALA E 117 REMARK 465 ASN E 118 REMARK 465 ALA E 119 REMARK 465 THR E 120 REMARK 465 LYS E 121 REMARK 465 LYS E 122 REMARK 465 VAL E 123 REMARK 465 GLY E 124 REMARK 465 THR E 125 REMARK 465 LYS E 126 REMARK 465 PRO E 127 REMARK 465 ALA E 128 REMARK 465 GLU E 129 REMARK 465 SER E 130 REMARK 465 ASP E 131 REMARK 465 LYS E 132 REMARK 465 LYS E 133 REMARK 465 GLU E 134 REMARK 465 GLU E 135 REMARK 465 GLU E 136 REMARK 465 LYS E 137 REMARK 465 SER E 138 REMARK 465 ALA E 139 REMARK 465 GLU E 140 REMARK 465 THR E 141 REMARK 465 LYS E 142 REMARK 465 GLU E 143 REMARK 465 PRO E 144 REMARK 465 THR E 145 REMARK 465 LYS E 146 REMARK 465 GLU E 147 REMARK 465 PRO E 148 REMARK 465 THR E 149 REMARK 465 LYS E 150 REMARK 465 VAL E 151 REMARK 465 GLU E 152 REMARK 465 GLU E 153 REMARK 465 PRO E 154 REMARK 465 VAL E 155 REMARK 465 LYS E 156 REMARK 465 LYS E 157 REMARK 465 GLU E 158 REMARK 465 GLU E 159 REMARK 465 LYS E 160 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 50 31.65 -140.72 REMARK 500 GLN B 50 31.66 -140.62 REMARK 500 GLN C 50 31.62 -140.62 REMARK 500 GLN D 50 31.66 -140.67 REMARK 500 GLN E 50 31.65 -140.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-67558 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF EX VIVO SUP35 PRION FIBRILS FROM YEAST REMARK 900 CARRYING "STRONG" [PSI+] VARIANT DBREF 21BQ A 1 160 PDB 21BQ 21BQ 1 160 DBREF 21BQ B 1 160 PDB 21BQ 21BQ 1 160 DBREF 21BQ C 1 160 PDB 21BQ 21BQ 1 160 DBREF 21BQ D 1 160 PDB 21BQ 21BQ 1 160 DBREF 21BQ E 1 160 PDB 21BQ 21BQ 1 160 SEQRES 1 A 160 ACE SER ASP SER ASN GLN GLY ASN ASN GLN GLN ASN TYR SEQRES 2 A 160 GLN GLN TYR SER GLN ASN GLY ASN GLN GLN GLN GLY ASN SEQRES 3 A 160 ASN ARG TYR GLN GLY TYR GLN ALA TYR ASN ALA GLN ALA SEQRES 4 A 160 GLN PRO ALA GLY GLY TYR TYR GLN ASN TYR GLN GLY TYR SEQRES 5 A 160 SER GLY TYR GLN GLN GLY GLY TYR GLN GLN TYR ASN PRO SEQRES 6 A 160 ASP ALA GLY TYR GLN GLN GLN TYR ASN PRO GLN GLY GLY SEQRES 7 A 160 TYR GLN GLN TYR ASN PRO GLN GLY GLY TYR GLN GLN GLN SEQRES 8 A 160 PHE ASN PRO GLN GLY ASP ASP ASP ASN GLU ASP SER GLU SEQRES 9 A 160 GLU ASP ASP GLU ASP GLY GLY PRO ARG GLY SER ARG ALA SEQRES 10 A 160 ASN ALA THR LYS LYS VAL GLY THR LYS PRO ALA GLU SER SEQRES 11 A 160 ASP LYS LYS GLU GLU GLU LYS SER ALA GLU THR LYS GLU SEQRES 12 A 160 PRO THR LYS GLU PRO THR LYS VAL GLU GLU PRO VAL LYS SEQRES 13 A 160 LYS GLU GLU LYS SEQRES 1 B 160 ACE SER ASP SER ASN GLN GLY ASN ASN GLN GLN ASN TYR SEQRES 2 B 160 GLN GLN TYR SER GLN ASN GLY ASN GLN GLN GLN GLY ASN SEQRES 3 B 160 ASN ARG TYR GLN GLY TYR GLN ALA TYR ASN ALA GLN ALA SEQRES 4 B 160 GLN PRO ALA GLY GLY TYR TYR GLN ASN TYR GLN GLY TYR SEQRES 5 B 160 SER GLY TYR GLN GLN GLY GLY TYR GLN GLN TYR ASN PRO SEQRES 6 B 160 ASP ALA GLY TYR GLN GLN GLN TYR ASN PRO GLN GLY GLY SEQRES 7 B 160 TYR GLN GLN TYR ASN PRO GLN GLY GLY TYR GLN GLN GLN SEQRES 8 B 160 PHE ASN PRO GLN GLY ASP ASP ASP ASN GLU ASP SER GLU SEQRES 9 B 160 GLU ASP ASP GLU ASP GLY GLY PRO ARG GLY SER ARG ALA SEQRES 10 B 160 ASN ALA THR LYS LYS VAL GLY THR LYS PRO ALA GLU SER SEQRES 11 B 160 ASP LYS LYS GLU GLU GLU LYS SER ALA GLU THR LYS GLU SEQRES 12 B 160 PRO THR LYS GLU PRO THR LYS VAL GLU GLU PRO VAL LYS SEQRES 13 B 160 LYS GLU GLU LYS SEQRES 1 C 160 ACE SER ASP SER ASN GLN GLY ASN ASN GLN GLN ASN TYR SEQRES 2 C 160 GLN GLN TYR SER GLN ASN GLY ASN GLN GLN GLN GLY ASN SEQRES 3 C 160 ASN ARG TYR GLN GLY TYR GLN ALA TYR ASN ALA GLN ALA SEQRES 4 C 160 GLN PRO ALA GLY GLY TYR TYR GLN ASN TYR GLN GLY TYR SEQRES 5 C 160 SER GLY TYR GLN GLN GLY GLY TYR GLN GLN TYR ASN PRO SEQRES 6 C 160 ASP ALA GLY TYR GLN GLN GLN TYR ASN PRO GLN GLY GLY SEQRES 7 C 160 TYR GLN GLN TYR ASN PRO GLN GLY GLY TYR GLN GLN GLN SEQRES 8 C 160 PHE ASN PRO GLN GLY ASP ASP ASP ASN GLU ASP SER GLU SEQRES 9 C 160 GLU ASP ASP GLU ASP GLY GLY PRO ARG GLY SER ARG ALA SEQRES 10 C 160 ASN ALA THR LYS LYS VAL GLY THR LYS PRO ALA GLU SER SEQRES 11 C 160 ASP LYS LYS GLU GLU GLU LYS SER ALA GLU THR LYS GLU SEQRES 12 C 160 PRO THR LYS GLU PRO THR LYS VAL GLU GLU PRO VAL LYS SEQRES 13 C 160 LYS GLU GLU LYS SEQRES 1 D 160 ACE SER ASP SER ASN GLN GLY ASN ASN GLN GLN ASN TYR SEQRES 2 D 160 GLN GLN TYR SER GLN ASN GLY ASN GLN GLN GLN GLY ASN SEQRES 3 D 160 ASN ARG TYR GLN GLY TYR GLN ALA TYR ASN ALA GLN ALA SEQRES 4 D 160 GLN PRO ALA GLY GLY TYR TYR GLN ASN TYR GLN GLY TYR SEQRES 5 D 160 SER GLY TYR GLN GLN GLY GLY TYR GLN GLN TYR ASN PRO SEQRES 6 D 160 ASP ALA GLY TYR GLN GLN GLN TYR ASN PRO GLN GLY GLY SEQRES 7 D 160 TYR GLN GLN TYR ASN PRO GLN GLY GLY TYR GLN GLN GLN SEQRES 8 D 160 PHE ASN PRO GLN GLY ASP ASP ASP ASN GLU ASP SER GLU SEQRES 9 D 160 GLU ASP ASP GLU ASP GLY GLY PRO ARG GLY SER ARG ALA SEQRES 10 D 160 ASN ALA THR LYS LYS VAL GLY THR LYS PRO ALA GLU SER SEQRES 11 D 160 ASP LYS LYS GLU GLU GLU LYS SER ALA GLU THR LYS GLU SEQRES 12 D 160 PRO THR LYS GLU PRO THR LYS VAL GLU GLU PRO VAL LYS SEQRES 13 D 160 LYS GLU GLU LYS SEQRES 1 E 160 ACE SER ASP SER ASN GLN GLY ASN ASN GLN GLN ASN TYR SEQRES 2 E 160 GLN GLN TYR SER GLN ASN GLY ASN GLN GLN GLN GLY ASN SEQRES 3 E 160 ASN ARG TYR GLN GLY TYR GLN ALA TYR ASN ALA GLN ALA SEQRES 4 E 160 GLN PRO ALA GLY GLY TYR TYR GLN ASN TYR GLN GLY TYR SEQRES 5 E 160 SER GLY TYR GLN GLN GLY GLY TYR GLN GLN TYR ASN PRO SEQRES 6 E 160 ASP ALA GLY TYR GLN GLN GLN TYR ASN PRO GLN GLY GLY SEQRES 7 E 160 TYR GLN GLN TYR ASN PRO GLN GLY GLY TYR GLN GLN GLN SEQRES 8 E 160 PHE ASN PRO GLN GLY ASP ASP ASP ASN GLU ASP SER GLU SEQRES 9 E 160 GLU ASP ASP GLU ASP GLY GLY PRO ARG GLY SER ARG ALA SEQRES 10 E 160 ASN ALA THR LYS LYS VAL GLY THR LYS PRO ALA GLU SER SEQRES 11 E 160 ASP LYS LYS GLU GLU GLU LYS SER ALA GLU THR LYS GLU SEQRES 12 E 160 PRO THR LYS GLU PRO THR LYS VAL GLU GLU PRO VAL LYS SEQRES 13 E 160 LYS GLU GLU LYS HET ACE A 1 3 HET ACE B 1 3 HET ACE C 1 3 HET ACE D 1 3 HET ACE E 1 3 HETNAM ACE ACETYL GROUP FORMUL 1 ACE 5(C2 H4 O) SHEET 1 AA1 5 ASN A 8 TYR A 16 0 SHEET 2 AA1 5 ASN B 8 TYR B 16 1 O ASN B 9 N GLN A 10 SHEET 3 AA1 5 ASN C 8 TYR C 16 1 O ASN C 9 N GLN B 10 SHEET 4 AA1 5 ASN D 8 TYR D 16 1 O ASN D 9 N GLN C 10 SHEET 5 AA1 5 ASN E 8 TYR E 16 1 O ASN E 9 N GLN D 10 SHEET 1 AA2 5 GLN A 22 GLN A 24 0 SHEET 2 AA2 5 GLN B 22 GLN B 24 1 O GLN B 24 N GLN A 23 SHEET 3 AA2 5 GLN C 22 GLN C 24 1 O GLN C 24 N GLN B 23 SHEET 4 AA2 5 GLN D 22 GLN D 24 1 O GLN D 24 N GLN C 23 SHEET 5 AA2 5 GLN E 22 GLN E 24 1 O GLN E 24 N GLN D 23 SHEET 1 AA3 5 ARG A 28 TYR A 29 0 SHEET 2 AA3 5 ARG B 28 TYR B 29 1 O ARG B 28 N TYR A 29 SHEET 3 AA3 5 ARG C 28 TYR C 29 1 O ARG C 28 N TYR B 29 SHEET 4 AA3 5 ARG D 28 TYR D 29 1 O ARG D 28 N TYR C 29 SHEET 5 AA3 5 ARG E 28 TYR E 29 1 O ARG E 28 N TYR D 29 SHEET 1 AA4 5 TYR A 35 ALA A 39 0 SHEET 2 AA4 5 TYR B 35 ALA B 39 1 O ASN B 36 N TYR A 35 SHEET 3 AA4 5 TYR C 35 ALA C 39 1 O ASN C 36 N TYR B 35 SHEET 4 AA4 5 TYR D 35 ALA D 39 1 O ASN D 36 N TYR C 35 SHEET 5 AA4 5 TYR E 35 ALA E 39 1 O ASN E 36 N TYR D 35 SHEET 1 AA5 5 TYR A 45 TYR A 49 0 SHEET 2 AA5 5 TYR B 45 TYR B 49 1 O TYR B 45 N TYR A 46 SHEET 3 AA5 5 TYR C 45 TYR C 49 1 O TYR C 45 N TYR B 46 SHEET 4 AA5 5 TYR D 45 TYR D 49 1 O TYR D 45 N TYR C 46 SHEET 5 AA5 5 TYR E 45 TYR E 49 1 O TYR E 45 N TYR D 46 SHEET 1 AA6 5 GLN A 61 TYR A 63 0 SHEET 2 AA6 5 GLN B 61 TYR B 63 1 O GLN B 62 N GLN A 61 SHEET 3 AA6 5 GLN C 61 TYR C 63 1 O GLN C 62 N GLN B 61 SHEET 4 AA6 5 GLN D 61 TYR D 63 1 O GLN D 62 N GLN C 61 SHEET 5 AA6 5 GLN E 61 TYR E 63 1 O GLN E 62 N GLN D 61 LINK C ACE A 1 N SER A 2 1555 1555 1.33 LINK C ACE B 1 N SER B 2 1555 1555 1.33 LINK C ACE C 1 N SER C 2 1555 1555 1.33 LINK C ACE D 1 N SER D 2 1555 1555 1.33 LINK C ACE E 1 N SER E 2 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 1 2 3 4 CONECT 2 1 CONECT 3 1 CONECT 4 1 CONECT 518 519 520 521 CONECT 519 518 CONECT 520 518 CONECT 521 518 CONECT 1035 1036 1037 1038 CONECT 1036 1035 CONECT 1037 1035 CONECT 1038 1035 CONECT 1552 1553 1554 1555 CONECT 1553 1552 CONECT 1554 1552 CONECT 1555 1552 CONECT 2069 2070 2071 2072 CONECT 2070 2069 CONECT 2071 2069 CONECT 2072 2069 MASTER 619 0 5 0 30 0 0 6 2580 5 20 65 END