data_21DE # _entry.id 21DE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 21DE pdb_000021de 10.2210/pdb21de/pdb WWPDB D_1300066983 ? ? EMDB EMD-67583 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-11-11 ? 2 'EM metadata' 1 0 2026-11-11 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 21DE _pdbx_database_status.recvd_initial_deposition_date 2025-12-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'MsSzR methanogenic Schizorhodopsin' _pdbx_database_related.db_id EMD-67583 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 4 _pdbx_contact_author.email nureki@bs.s.u-tokyo.ac.jp _pdbx_contact_author.name_first Osamu _pdbx_contact_author.name_last Nureki _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-1813-7008 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ebisu, I.' 1 0009-0003-0342-5979 'Tanaka, T.' 2 0000-0001-5728-7573 'Murakoshi, S.' 3 0000-0001-7019-9332 'Shihoya, W.' 4 0000-0003-4813-5740 'Nureki, O.' 5 0000-0003-1813-7008 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'MsSzR methanogenic Schizorhodopsin' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ebisu, I.' 1 0009-0003-0342-5979 primary 'Tanaka, T.' 2 0000-0001-5728-7573 primary 'Kawasaki, Y.' 3 0000-0003-4872-1125 primary 'Murakoshi, S.' 4 0000-0001-7019-9332 primary 'Shibata, K.' 5 0000-0002-9815-4336 primary 'Kato, Y.' 6 0009-0000-0341-2850 primary 'Konno, M.' 7 0000-0002-0605-1816 primary 'Shihoya, W.' 8 0000-0003-4813-5740 primary 'Inoue, K.' 9 0000-0002-6898-4347 primary 'Nureki, O.' 10 0000-0003-1813-7008 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man MsSzR 22518.818 1 ? ? ? ? 2 non-polymer syn RETINAL 284.436 1 ? ? ? ? 3 non-polymer syn 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 790.145 2 ? ? ? ? 4 water nat water 18.015 20 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MASEIIVFQIGAMIFAASSVVFLVGGTKKLNFDTEFFISFITSMSYVVMSLAIATTVALGGGTIYWSRWLFYMAACPLLM YDVVRISTGSTREYPVFALLTCLTMFNGFLASFVVSSSRWIFFLFGSAAFIGLLYMVSRGQKNRASKTLKPFVYIGWSLF PVVFLLAPTGFGIFDAPVTAFLYLLLDLVTKLWFGIITIRMK ; _entity_poly.pdbx_seq_one_letter_code_can ;MASEIIVFQIGAMIFAASSVVFLVGGTKKLNFDTEFFISFITSMSYVVMSLAIATTVALGGGTIYWSRWLFYMAACPLLM YDVVRISTGSTREYPVFALLTCLTMFNGFLASFVVSSSRWIFFLFGSAAFIGLLYMVSRGQKNRASKTLKPFVYIGWSLF PVVFLLAPTGFGIFDAPVTAFLYLLLDLVTKLWFGIITIRMK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 RETINAL RET 3 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE PC1 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 SER n 1 4 GLU n 1 5 ILE n 1 6 ILE n 1 7 VAL n 1 8 PHE n 1 9 GLN n 1 10 ILE n 1 11 GLY n 1 12 ALA n 1 13 MET n 1 14 ILE n 1 15 PHE n 1 16 ALA n 1 17 ALA n 1 18 SER n 1 19 SER n 1 20 VAL n 1 21 VAL n 1 22 PHE n 1 23 LEU n 1 24 VAL n 1 25 GLY n 1 26 GLY n 1 27 THR n 1 28 LYS n 1 29 LYS n 1 30 LEU n 1 31 ASN n 1 32 PHE n 1 33 ASP n 1 34 THR n 1 35 GLU n 1 36 PHE n 1 37 PHE n 1 38 ILE n 1 39 SER n 1 40 PHE n 1 41 ILE n 1 42 THR n 1 43 SER n 1 44 MET n 1 45 SER n 1 46 TYR n 1 47 VAL n 1 48 VAL n 1 49 MET n 1 50 SER n 1 51 LEU n 1 52 ALA n 1 53 ILE n 1 54 ALA n 1 55 THR n 1 56 THR n 1 57 VAL n 1 58 ALA n 1 59 LEU n 1 60 GLY n 1 61 GLY n 1 62 GLY n 1 63 THR n 1 64 ILE n 1 65 TYR n 1 66 TRP n 1 67 SER n 1 68 ARG n 1 69 TRP n 1 70 LEU n 1 71 PHE n 1 72 TYR n 1 73 MET n 1 74 ALA n 1 75 ALA n 1 76 CYS n 1 77 PRO n 1 78 LEU n 1 79 LEU n 1 80 MET n 1 81 TYR n 1 82 ASP n 1 83 VAL n 1 84 VAL n 1 85 ARG n 1 86 ILE n 1 87 SER n 1 88 THR n 1 89 GLY n 1 90 SER n 1 91 THR n 1 92 ARG n 1 93 GLU n 1 94 TYR n 1 95 PRO n 1 96 VAL n 1 97 PHE n 1 98 ALA n 1 99 LEU n 1 100 LEU n 1 101 THR n 1 102 CYS n 1 103 LEU n 1 104 THR n 1 105 MET n 1 106 PHE n 1 107 ASN n 1 108 GLY n 1 109 PHE n 1 110 LEU n 1 111 ALA n 1 112 SER n 1 113 PHE n 1 114 VAL n 1 115 VAL n 1 116 SER n 1 117 SER n 1 118 SER n 1 119 ARG n 1 120 TRP n 1 121 ILE n 1 122 PHE n 1 123 PHE n 1 124 LEU n 1 125 PHE n 1 126 GLY n 1 127 SER n 1 128 ALA n 1 129 ALA n 1 130 PHE n 1 131 ILE n 1 132 GLY n 1 133 LEU n 1 134 LEU n 1 135 TYR n 1 136 MET n 1 137 VAL n 1 138 SER n 1 139 ARG n 1 140 GLY n 1 141 GLN n 1 142 LYS n 1 143 ASN n 1 144 ARG n 1 145 ALA n 1 146 SER n 1 147 LYS n 1 148 THR n 1 149 LEU n 1 150 LYS n 1 151 PRO n 1 152 PHE n 1 153 VAL n 1 154 TYR n 1 155 ILE n 1 156 GLY n 1 157 TRP n 1 158 SER n 1 159 LEU n 1 160 PHE n 1 161 PRO n 1 162 VAL n 1 163 VAL n 1 164 PHE n 1 165 LEU n 1 166 LEU n 1 167 ALA n 1 168 PRO n 1 169 THR n 1 170 GLY n 1 171 PHE n 1 172 GLY n 1 173 ILE n 1 174 PHE n 1 175 ASP n 1 176 ALA n 1 177 PRO n 1 178 VAL n 1 179 THR n 1 180 ALA n 1 181 PHE n 1 182 LEU n 1 183 TYR n 1 184 LEU n 1 185 LEU n 1 186 LEU n 1 187 ASP n 1 188 LEU n 1 189 VAL n 1 190 THR n 1 191 LYS n 1 192 LEU n 1 193 TRP n 1 194 PHE n 1 195 GLY n 1 196 ILE n 1 197 ILE n 1 198 THR n 1 199 ILE n 1 200 ARG n 1 201 MET n 1 202 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 202 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanoculleus sp.' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 90427 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PC1 non-polymer . 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 3-SN-PHOSPHATIDYLCHOLINE 'C44 H88 N O8 P' 790.145 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RET non-polymer . RETINAL ? 'C20 H28 O' 284.436 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 MET 13 13 13 MET MET A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 MET 44 44 44 MET MET A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 MET 49 49 49 MET MET A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 TRP 66 66 66 TRP TRP A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 TRP 69 69 69 TRP TRP A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 TYR 72 72 72 TYR TYR A . n A 1 73 MET 73 73 73 MET MET A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 CYS 76 76 76 CYS CYS A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 MET 80 80 80 MET MET A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 THR 88 88 88 THR THR A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 CYS 102 102 102 CYS CYS A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 PHE 106 106 106 PHE PHE A . n A 1 107 ASN 107 107 107 ASN ASN A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 PHE 109 109 109 PHE PHE A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 PHE 113 113 113 PHE PHE A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 TRP 120 120 120 TRP TRP A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 PHE 122 122 122 PHE PHE A . n A 1 123 PHE 123 123 123 PHE PHE A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 PHE 125 125 125 PHE PHE A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 ALA 128 128 128 ALA ALA A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 PHE 130 130 130 PHE PHE A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 TYR 135 135 135 TYR TYR A . n A 1 136 MET 136 136 136 MET MET A . n A 1 137 VAL 137 137 137 VAL VAL A . n A 1 138 SER 138 138 138 SER SER A . n A 1 139 ARG 139 139 139 ARG ARG A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 GLN 141 141 141 GLN GLN A . n A 1 142 LYS 142 142 142 LYS LYS A . n A 1 143 ASN 143 143 143 ASN ASN A . n A 1 144 ARG 144 144 144 ARG ARG A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 LYS 147 147 147 LYS LYS A . n A 1 148 THR 148 148 148 THR THR A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 LYS 150 150 150 LYS LYS A . n A 1 151 PRO 151 151 151 PRO PRO A . n A 1 152 PHE 152 152 152 PHE PHE A . n A 1 153 VAL 153 153 153 VAL VAL A . n A 1 154 TYR 154 154 154 TYR TYR A . n A 1 155 ILE 155 155 155 ILE ILE A . n A 1 156 GLY 156 156 156 GLY GLY A . n A 1 157 TRP 157 157 157 TRP TRP A . n A 1 158 SER 158 158 158 SER SER A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 PHE 160 160 160 PHE PHE A . n A 1 161 PRO 161 161 161 PRO PRO A . n A 1 162 VAL 162 162 162 VAL VAL A . n A 1 163 VAL 163 163 163 VAL VAL A . n A 1 164 PHE 164 164 164 PHE PHE A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 ALA 167 167 167 ALA ALA A . n A 1 168 PRO 168 168 168 PRO PRO A . n A 1 169 THR 169 169 169 THR THR A . n A 1 170 GLY 170 170 170 GLY GLY A . n A 1 171 PHE 171 171 171 PHE PHE A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 ILE 173 173 173 ILE ILE A . n A 1 174 PHE 174 174 174 PHE PHE A . n A 1 175 ASP 175 175 175 ASP ASP A . n A 1 176 ALA 176 176 176 ALA ALA A . n A 1 177 PRO 177 177 177 PRO PRO A . n A 1 178 VAL 178 178 178 VAL VAL A . n A 1 179 THR 179 179 179 THR THR A . n A 1 180 ALA 180 180 180 ALA ALA A . n A 1 181 PHE 181 181 181 PHE PHE A . n A 1 182 LEU 182 182 182 LEU LEU A . n A 1 183 TYR 183 183 183 TYR TYR A . n A 1 184 LEU 184 184 184 LEU LEU A . n A 1 185 LEU 185 185 185 LEU LEU A . n A 1 186 LEU 186 186 186 LEU LEU A . n A 1 187 ASP 187 187 187 ASP ASP A . n A 1 188 LEU 188 188 188 LEU LEU A . n A 1 189 VAL 189 189 189 VAL VAL A . n A 1 190 THR 190 190 190 THR THR A . n A 1 191 LYS 191 191 191 LYS LYS A . n A 1 192 LEU 192 192 192 LEU LEU A . n A 1 193 TRP 193 193 193 TRP TRP A . n A 1 194 PHE 194 194 194 PHE PHE A . n A 1 195 GLY 195 195 195 GLY GLY A . n A 1 196 ILE 196 196 196 ILE ILE A . n A 1 197 ILE 197 197 197 ILE ILE A . n A 1 198 THR 198 198 198 THR THR A . n A 1 199 ILE 199 199 199 ILE ILE A . n A 1 200 ARG 200 200 200 ARG ARG A . n A 1 201 MET 201 201 201 MET MET A . n A 1 202 LYS 202 202 202 LYS LYS A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id RET _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id RET _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET 1 301 301 RET RET A . C 3 PC1 1 302 403 PC1 PC1 A . D 3 PC1 1 303 404 PC1 PC1 A . E 4 HOH 1 401 503 HOH HOH A . E 4 HOH 2 402 512 HOH HOH A . E 4 HOH 3 403 516 HOH HOH A . E 4 HOH 4 404 508 HOH HOH A . E 4 HOH 5 405 504 HOH HOH A . E 4 HOH 6 406 506 HOH HOH A . E 4 HOH 7 407 509 HOH HOH A . E 4 HOH 8 408 505 HOH HOH A . E 4 HOH 9 409 513 HOH HOH A . E 4 HOH 10 410 520 HOH HOH A . E 4 HOH 11 411 507 HOH HOH A . E 4 HOH 12 412 511 HOH HOH A . E 4 HOH 13 413 517 HOH HOH A . E 4 HOH 14 414 519 HOH HOH A . E 4 HOH 15 415 521 HOH HOH A . E 4 HOH 16 416 523 HOH HOH A . E 4 HOH 17 417 501 HOH HOH A . E 4 HOH 18 418 502 HOH HOH A . E 4 HOH 19 419 510 HOH HOH A . E 4 HOH 20 420 514 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A PC1 302 ? C11 ? C PC1 1 C11 2 1 N 1 A PC1 302 ? C12 ? C PC1 1 C12 3 1 N 1 A PC1 302 ? N ? C PC1 1 N 4 1 N 1 A PC1 302 ? C13 ? C PC1 1 C13 5 1 N 1 A PC1 302 ? C14 ? C PC1 1 C14 6 1 N 1 A PC1 302 ? C15 ? C PC1 1 C15 7 1 N 1 A PC1 302 ? C2E ? C PC1 1 C2E 8 1 N 1 A PC1 302 ? C2F ? C PC1 1 C2F 9 1 N 1 A PC1 302 ? C2G ? C PC1 1 C2G 10 1 N 1 A PC1 302 ? C2H ? C PC1 1 C2H 11 1 N 1 A PC1 302 ? C2I ? C PC1 1 C2I 12 1 N 1 A PC1 302 ? C3B ? C PC1 1 C3B 13 1 N 1 A PC1 302 ? C3C ? C PC1 1 C3C 14 1 N 1 A PC1 302 ? C3D ? C PC1 1 C3D 15 1 N 1 A PC1 302 ? C3E ? C PC1 1 C3E 16 1 N 1 A PC1 302 ? C3F ? C PC1 1 C3F 17 1 N 1 A PC1 302 ? C3G ? C PC1 1 C3G 18 1 N 1 A PC1 302 ? C3H ? C PC1 1 C3H 19 1 N 1 A PC1 302 ? C3I ? C PC1 1 C3I 20 1 N 1 A PC1 303 ? C11 ? D PC1 1 C11 21 1 N 1 A PC1 303 ? C12 ? D PC1 1 C12 22 1 N 1 A PC1 303 ? N ? D PC1 1 N 23 1 N 1 A PC1 303 ? C13 ? D PC1 1 C13 24 1 N 1 A PC1 303 ? C14 ? D PC1 1 C14 25 1 N 1 A PC1 303 ? C15 ? D PC1 1 C15 26 1 N 1 A PC1 303 ? C2E ? D PC1 1 C2E 27 1 N 1 A PC1 303 ? C2F ? D PC1 1 C2F 28 1 N 1 A PC1 303 ? C2G ? D PC1 1 C2G 29 1 N 1 A PC1 303 ? C2H ? D PC1 1 C2H 30 1 N 1 A PC1 303 ? C2I ? D PC1 1 C2I 31 1 N 1 A PC1 303 ? C3B ? D PC1 1 C3B 32 1 N 1 A PC1 303 ? C3C ? D PC1 1 C3C 33 1 N 1 A PC1 303 ? C3D ? D PC1 1 C3D 34 1 N 1 A PC1 303 ? C3E ? D PC1 1 C3E 35 1 N 1 A PC1 303 ? C3F ? D PC1 1 C3F 36 1 N 1 A PC1 303 ? C3G ? D PC1 1 C3G 37 1 N 1 A PC1 303 ? C3H ? D PC1 1 C3H 38 1 N 1 A PC1 303 ? C3I ? D PC1 1 C3I # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 21DE _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 21DE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 21DE _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 21DE _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.67 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 5172 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.427 ? 6981 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 5.474 ? 822 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.035 ? 786 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 801 ? f_plane_restr ? ? ? # _struct.entry_id 21DE _struct.title 'MsSzR methanogenic Schizorhodopsin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 21DE _struct_keywords.text 'Schizorhodopsin, MEMBRANE PROTEIN' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 21DE _struct_ref.pdbx_db_accession 21DE _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 21DE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 202 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 21DE _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 202 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 202 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete point assembly' ? trimeric 3 2 'point asymmetric unit' ? monomeric 1 3 'point asymmetric unit, std point frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-3)' A,B,C,D,E 2 1 A,B,C,D,E 3 P A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.87520997 0.48374323 0.00000000 41.58932 -0.48374323 -0.87520997 0.00000000 144.37532 0.00000000 0.00000000 1.00000000 -99.97812 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? -0.50000000 -0.86602540 0.00000000 251.36664 0.86602540 -0.50000000 0.00000000 67.35374 0.00000000 0.00000000 1.00000000 0.00000 3 'point symmetry operation' ? ? -0.50000000 0.86602540 0.00000000 67.35327 -0.86602540 -0.50000000 0.00000000 251.36676 0.00000000 0.00000000 1.00000000 0.00000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 2 ? GLY A 25 ? ALA A 2 GLY A 25 1 ? 24 HELX_P HELX_P2 AA2 ASP A 33 ? LEU A 51 ? ASP A 33 LEU A 51 1 ? 19 HELX_P HELX_P3 AA3 TRP A 66 ? THR A 88 ? TRP A 66 THR A 88 1 ? 23 HELX_P HELX_P4 AA4 GLU A 93 ? VAL A 114 ? GLU A 93 VAL A 114 1 ? 22 HELX_P HELX_P5 AA5 SER A 118 ? ARG A 139 ? SER A 118 ARG A 139 1 ? 22 HELX_P HELX_P6 AA6 ALA A 145 ? LYS A 150 ? ALA A 145 LYS A 150 1 ? 6 HELX_P HELX_P7 AA7 LYS A 150 ? ILE A 155 ? LYS A 150 ILE A 155 1 ? 6 HELX_P HELX_P8 AA8 SER A 158 ? ALA A 167 ? SER A 158 ALA A 167 1 ? 10 HELX_P HELX_P9 AA9 ASP A 175 ? LYS A 191 ? ASP A 175 LYS A 191 1 ? 17 HELX_P HELX_P10 AB1 LYS A 191 ? MET A 201 ? LYS A 191 MET A 201 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 191 _struct_conn.ptnr1_label_atom_id NZ _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C15 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 191 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.340 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id RET _pdbx_modification_feature.label_asym_id B _pdbx_modification_feature.label_seq_id . _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id LYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 191 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id RET _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 301 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id LYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 191 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom C15 _pdbx_modification_feature.modified_residue_id_linking_atom NZ _pdbx_modification_feature.modified_residue_id LYS _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id RET _pdbx_modification_feature.type Retinoylation _pdbx_modification_feature.category Lipid/lipid-like # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 55 ? VAL A 57 ? THR A 55 VAL A 57 AA1 2 THR A 63 ? TYR A 65 ? THR A 63 TYR A 65 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id THR _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 56 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id THR _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 56 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ILE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 64 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 64 # _pdbx_entry_details.entry_id 21DE _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id THR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 91 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -94.54 _pdbx_validate_torsion.psi 59.96 # _pdbx_point_symmetry.entry_id 21DE _pdbx_point_symmetry.Schoenflies_symbol C _pdbx_point_symmetry.circular_symmetry 3 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 21DE _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 21DE _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.67 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 206620 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name MsSzR _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 21DE _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'DARK FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 600 _em_imaging.nominal_defocus_max 1500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 21DE _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 21DE _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HOH O O N N 137 HOH H1 H N N 138 HOH H2 H N N 139 ILE N N N N 140 ILE CA C N S 141 ILE C C N N 142 ILE O O N N 143 ILE CB C N S 144 ILE CG1 C N N 145 ILE CG2 C N N 146 ILE CD1 C N N 147 ILE OXT O N N 148 ILE H H N N 149 ILE H2 H N N 150 ILE HA H N N 151 ILE HB H N N 152 ILE HG12 H N N 153 ILE HG13 H N N 154 ILE HG21 H N N 155 ILE HG22 H N N 156 ILE HG23 H N N 157 ILE HD11 H N N 158 ILE HD12 H N N 159 ILE HD13 H N N 160 ILE HXT H N N 161 LEU N N N N 162 LEU CA C N S 163 LEU C C N N 164 LEU O O N N 165 LEU CB C N N 166 LEU CG C N N 167 LEU CD1 C N N 168 LEU CD2 C N N 169 LEU OXT O N N 170 LEU H H N N 171 LEU H2 H N N 172 LEU HA H N N 173 LEU HB2 H N N 174 LEU HB3 H N N 175 LEU HG H N N 176 LEU HD11 H N N 177 LEU HD12 H N N 178 LEU HD13 H N N 179 LEU HD21 H N N 180 LEU HD22 H N N 181 LEU HD23 H N N 182 LEU HXT H N N 183 LYS N N N N 184 LYS CA C N S 185 LYS C C N N 186 LYS O O N N 187 LYS CB C N N 188 LYS CG C N N 189 LYS CD C N N 190 LYS CE C N N 191 LYS NZ N N N 192 LYS OXT O N N 193 LYS H H N N 194 LYS H2 H N N 195 LYS HA H N N 196 LYS HB2 H N N 197 LYS HB3 H N N 198 LYS HG2 H N N 199 LYS HG3 H N N 200 LYS HD2 H N N 201 LYS HD3 H N N 202 LYS HE2 H N N 203 LYS HE3 H N N 204 LYS HZ1 H N N 205 LYS HZ2 H N N 206 LYS HZ3 H N N 207 LYS HXT H N N 208 MET N N N N 209 MET CA C N S 210 MET C C N N 211 MET O O N N 212 MET CB C N N 213 MET CG C N N 214 MET SD S N N 215 MET CE C N N 216 MET OXT O N N 217 MET H H N N 218 MET H2 H N N 219 MET HA H N N 220 MET HB2 H N N 221 MET HB3 H N N 222 MET HG2 H N N 223 MET HG3 H N N 224 MET HE1 H N N 225 MET HE2 H N N 226 MET HE3 H N N 227 MET HXT H N N 228 PC1 O12 O N N 229 PC1 P P N N 230 PC1 O14 O N N 231 PC1 O13 O N N 232 PC1 C11 C N N 233 PC1 C12 C N N 234 PC1 N N N N 235 PC1 C13 C N N 236 PC1 C14 C N N 237 PC1 C15 C N N 238 PC1 O11 O N N 239 PC1 C1 C N N 240 PC1 C2 C N R 241 PC1 O21 O N N 242 PC1 C21 C N N 243 PC1 O22 O N N 244 PC1 C22 C N N 245 PC1 C23 C N N 246 PC1 C24 C N N 247 PC1 C25 C N N 248 PC1 C26 C N N 249 PC1 C27 C N N 250 PC1 C28 C N N 251 PC1 C29 C N N 252 PC1 C2A C N N 253 PC1 C2B C N N 254 PC1 C2C C N N 255 PC1 C2D C N N 256 PC1 C2E C N N 257 PC1 C2F C N N 258 PC1 C2G C N N 259 PC1 C2H C N N 260 PC1 C2I C N N 261 PC1 C3 C N N 262 PC1 O31 O N N 263 PC1 C31 C N N 264 PC1 O32 O N N 265 PC1 C32 C N N 266 PC1 C33 C N N 267 PC1 C34 C N N 268 PC1 C35 C N N 269 PC1 C36 C N N 270 PC1 C37 C N N 271 PC1 C38 C N N 272 PC1 C39 C N N 273 PC1 C3A C N N 274 PC1 C3B C N N 275 PC1 C3C C N N 276 PC1 C3D C N N 277 PC1 C3E C N N 278 PC1 C3F C N N 279 PC1 C3G C N N 280 PC1 C3H C N N 281 PC1 C3I C N N 282 PC1 H111 H N N 283 PC1 H112 H N N 284 PC1 H121 H N N 285 PC1 H122 H N N 286 PC1 H131 H N N 287 PC1 H132 H N N 288 PC1 H133 H N N 289 PC1 H141 H N N 290 PC1 H142 H N N 291 PC1 H143 H N N 292 PC1 H151 H N N 293 PC1 H152 H N N 294 PC1 H153 H N N 295 PC1 H11 H N N 296 PC1 H12 H N N 297 PC1 H2 H N N 298 PC1 H221 H N N 299 PC1 H222 H N N 300 PC1 H231 H N N 301 PC1 H232 H N N 302 PC1 H241 H N N 303 PC1 H242 H N N 304 PC1 H251 H N N 305 PC1 H252 H N N 306 PC1 H261 H N N 307 PC1 H262 H N N 308 PC1 H271 H N N 309 PC1 H272 H N N 310 PC1 H281 H N N 311 PC1 H282 H N N 312 PC1 H291 H N N 313 PC1 H292 H N N 314 PC1 H2A1 H N N 315 PC1 H2A2 H N N 316 PC1 H2B1 H N N 317 PC1 H2B2 H N N 318 PC1 H2C1 H N N 319 PC1 H2C2 H N N 320 PC1 H2D1 H N N 321 PC1 H2D2 H N N 322 PC1 H2E1 H N N 323 PC1 H2E2 H N N 324 PC1 H2F1 H N N 325 PC1 H2F2 H N N 326 PC1 H2G1 H N N 327 PC1 H2G2 H N N 328 PC1 H2H1 H N N 329 PC1 H2H2 H N N 330 PC1 H2I1 H N N 331 PC1 H2I2 H N N 332 PC1 H2I3 H N N 333 PC1 H31 H N N 334 PC1 H32 H N N 335 PC1 H321 H N N 336 PC1 H322 H N N 337 PC1 H331 H N N 338 PC1 H332 H N N 339 PC1 H341 H N N 340 PC1 H342 H N N 341 PC1 H351 H N N 342 PC1 H352 H N N 343 PC1 H361 H N N 344 PC1 H362 H N N 345 PC1 H371 H N N 346 PC1 H372 H N N 347 PC1 H381 H N N 348 PC1 H382 H N N 349 PC1 H391 H N N 350 PC1 H392 H N N 351 PC1 H3A1 H N N 352 PC1 H3A2 H N N 353 PC1 H3B1 H N N 354 PC1 H3B2 H N N 355 PC1 H3C1 H N N 356 PC1 H3C2 H N N 357 PC1 H3D1 H N N 358 PC1 H3D2 H N N 359 PC1 H3E1 H N N 360 PC1 H3E2 H N N 361 PC1 H3F1 H N N 362 PC1 H3F2 H N N 363 PC1 H3G1 H N N 364 PC1 H3G2 H N N 365 PC1 H3H1 H N N 366 PC1 H3H2 H N N 367 PC1 H3I1 H N N 368 PC1 H3I2 H N N 369 PC1 H3I3 H N N 370 PHE N N N N 371 PHE CA C N S 372 PHE C C N N 373 PHE O O N N 374 PHE CB C N N 375 PHE CG C Y N 376 PHE CD1 C Y N 377 PHE CD2 C Y N 378 PHE CE1 C Y N 379 PHE CE2 C Y N 380 PHE CZ C Y N 381 PHE OXT O N N 382 PHE H H N N 383 PHE H2 H N N 384 PHE HA H N N 385 PHE HB2 H N N 386 PHE HB3 H N N 387 PHE HD1 H N N 388 PHE HD2 H N N 389 PHE HE1 H N N 390 PHE HE2 H N N 391 PHE HZ H N N 392 PHE HXT H N N 393 PRO N N N N 394 PRO CA C N S 395 PRO C C N N 396 PRO O O N N 397 PRO CB C N N 398 PRO CG C N N 399 PRO CD C N N 400 PRO OXT O N N 401 PRO H H N N 402 PRO HA H N N 403 PRO HB2 H N N 404 PRO HB3 H N N 405 PRO HG2 H N N 406 PRO HG3 H N N 407 PRO HD2 H N N 408 PRO HD3 H N N 409 PRO HXT H N N 410 RET C1 C N N 411 RET C2 C N N 412 RET C3 C N N 413 RET C4 C N N 414 RET C5 C N N 415 RET C6 C N N 416 RET C7 C N N 417 RET C8 C N N 418 RET C9 C N N 419 RET C10 C N N 420 RET C11 C N N 421 RET C12 C N N 422 RET C13 C N N 423 RET C14 C N N 424 RET C15 C N N 425 RET O1 O N N 426 RET C16 C N N 427 RET C17 C N N 428 RET C18 C N N 429 RET C19 C N N 430 RET C20 C N N 431 RET H21 H N N 432 RET H22 H N N 433 RET H31 H N N 434 RET H32 H N N 435 RET H41 H N N 436 RET H42 H N N 437 RET H7 H N N 438 RET H8 H N N 439 RET H10 H N N 440 RET H11 H N N 441 RET H12 H N N 442 RET H14 H N N 443 RET H15 H N N 444 RET H161 H N N 445 RET H162 H N N 446 RET H163 H N N 447 RET H171 H N N 448 RET H172 H N N 449 RET H173 H N N 450 RET H181 H N N 451 RET H182 H N N 452 RET H183 H N N 453 RET H191 H N N 454 RET H192 H N N 455 RET H193 H N N 456 RET H201 H N N 457 RET H202 H N N 458 RET H203 H N N 459 SER N N N N 460 SER CA C N S 461 SER C C N N 462 SER O O N N 463 SER CB C N N 464 SER OG O N N 465 SER OXT O N N 466 SER H H N N 467 SER H2 H N N 468 SER HA H N N 469 SER HB2 H N N 470 SER HB3 H N N 471 SER HG H N N 472 SER HXT H N N 473 THR N N N N 474 THR CA C N S 475 THR C C N N 476 THR O O N N 477 THR CB C N R 478 THR OG1 O N N 479 THR CG2 C N N 480 THR OXT O N N 481 THR H H N N 482 THR H2 H N N 483 THR HA H N N 484 THR HB H N N 485 THR HG1 H N N 486 THR HG21 H N N 487 THR HG22 H N N 488 THR HG23 H N N 489 THR HXT H N N 490 TRP N N N N 491 TRP CA C N S 492 TRP C C N N 493 TRP O O N N 494 TRP CB C N N 495 TRP CG C Y N 496 TRP CD1 C Y N 497 TRP CD2 C Y N 498 TRP NE1 N Y N 499 TRP CE2 C Y N 500 TRP CE3 C Y N 501 TRP CZ2 C Y N 502 TRP CZ3 C Y N 503 TRP CH2 C Y N 504 TRP OXT O N N 505 TRP H H N N 506 TRP H2 H N N 507 TRP HA H N N 508 TRP HB2 H N N 509 TRP HB3 H N N 510 TRP HD1 H N N 511 TRP HE1 H N N 512 TRP HE3 H N N 513 TRP HZ2 H N N 514 TRP HZ3 H N N 515 TRP HH2 H N N 516 TRP HXT H N N 517 TYR N N N N 518 TYR CA C N S 519 TYR C C N N 520 TYR O O N N 521 TYR CB C N N 522 TYR CG C Y N 523 TYR CD1 C Y N 524 TYR CD2 C Y N 525 TYR CE1 C Y N 526 TYR CE2 C Y N 527 TYR CZ C Y N 528 TYR OH O N N 529 TYR OXT O N N 530 TYR H H N N 531 TYR H2 H N N 532 TYR HA H N N 533 TYR HB2 H N N 534 TYR HB3 H N N 535 TYR HD1 H N N 536 TYR HD2 H N N 537 TYR HE1 H N N 538 TYR HE2 H N N 539 TYR HH H N N 540 TYR HXT H N N 541 VAL N N N N 542 VAL CA C N S 543 VAL C C N N 544 VAL O O N N 545 VAL CB C N N 546 VAL CG1 C N N 547 VAL CG2 C N N 548 VAL OXT O N N 549 VAL H H N N 550 VAL H2 H N N 551 VAL HA H N N 552 VAL HB H N N 553 VAL HG11 H N N 554 VAL HG12 H N N 555 VAL HG13 H N N 556 VAL HG21 H N N 557 VAL HG22 H N N 558 VAL HG23 H N N 559 VAL HXT H N N 560 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HOH O H1 sing N N 129 HOH O H2 sing N N 130 ILE N CA sing N N 131 ILE N H sing N N 132 ILE N H2 sing N N 133 ILE CA C sing N N 134 ILE CA CB sing N N 135 ILE CA HA sing N N 136 ILE C O doub N N 137 ILE C OXT sing N N 138 ILE CB CG1 sing N N 139 ILE CB CG2 sing N N 140 ILE CB HB sing N N 141 ILE CG1 CD1 sing N N 142 ILE CG1 HG12 sing N N 143 ILE CG1 HG13 sing N N 144 ILE CG2 HG21 sing N N 145 ILE CG2 HG22 sing N N 146 ILE CG2 HG23 sing N N 147 ILE CD1 HD11 sing N N 148 ILE CD1 HD12 sing N N 149 ILE CD1 HD13 sing N N 150 ILE OXT HXT sing N N 151 LEU N CA sing N N 152 LEU N H sing N N 153 LEU N H2 sing N N 154 LEU CA C sing N N 155 LEU CA CB sing N N 156 LEU CA HA sing N N 157 LEU C O doub N N 158 LEU C OXT sing N N 159 LEU CB CG sing N N 160 LEU CB HB2 sing N N 161 LEU CB HB3 sing N N 162 LEU CG CD1 sing N N 163 LEU CG CD2 sing N N 164 LEU CG HG sing N N 165 LEU CD1 HD11 sing N N 166 LEU CD1 HD12 sing N N 167 LEU CD1 HD13 sing N N 168 LEU CD2 HD21 sing N N 169 LEU CD2 HD22 sing N N 170 LEU CD2 HD23 sing N N 171 LEU OXT HXT sing N N 172 LYS N CA sing N N 173 LYS N H sing N N 174 LYS N H2 sing N N 175 LYS CA C sing N N 176 LYS CA CB sing N N 177 LYS CA HA sing N N 178 LYS C O doub N N 179 LYS C OXT sing N N 180 LYS CB CG sing N N 181 LYS CB HB2 sing N N 182 LYS CB HB3 sing N N 183 LYS CG CD sing N N 184 LYS CG HG2 sing N N 185 LYS CG HG3 sing N N 186 LYS CD CE sing N N 187 LYS CD HD2 sing N N 188 LYS CD HD3 sing N N 189 LYS CE NZ sing N N 190 LYS CE HE2 sing N N 191 LYS CE HE3 sing N N 192 LYS NZ HZ1 sing N N 193 LYS NZ HZ2 sing N N 194 LYS NZ HZ3 sing N N 195 LYS OXT HXT sing N N 196 MET N CA sing N N 197 MET N H sing N N 198 MET N H2 sing N N 199 MET CA C sing N N 200 MET CA CB sing N N 201 MET CA HA sing N N 202 MET C O doub N N 203 MET C OXT sing N N 204 MET CB CG sing N N 205 MET CB HB2 sing N N 206 MET CB HB3 sing N N 207 MET CG SD sing N N 208 MET CG HG2 sing N N 209 MET CG HG3 sing N N 210 MET SD CE sing N N 211 MET CE HE1 sing N N 212 MET CE HE2 sing N N 213 MET CE HE3 sing N N 214 MET OXT HXT sing N N 215 PC1 O12 P sing N N 216 PC1 P O14 doub N N 217 PC1 P O13 sing N N 218 PC1 P O11 sing N N 219 PC1 O13 C11 sing N N 220 PC1 C11 C12 sing N N 221 PC1 C11 H111 sing N N 222 PC1 C11 H112 sing N N 223 PC1 C12 N sing N N 224 PC1 C12 H121 sing N N 225 PC1 C12 H122 sing N N 226 PC1 N C13 sing N N 227 PC1 N C14 sing N N 228 PC1 N C15 sing N N 229 PC1 C13 H131 sing N N 230 PC1 C13 H132 sing N N 231 PC1 C13 H133 sing N N 232 PC1 C14 H141 sing N N 233 PC1 C14 H142 sing N N 234 PC1 C14 H143 sing N N 235 PC1 C15 H151 sing N N 236 PC1 C15 H152 sing N N 237 PC1 C15 H153 sing N N 238 PC1 O11 C1 sing N N 239 PC1 C1 C2 sing N N 240 PC1 C1 H11 sing N N 241 PC1 C1 H12 sing N N 242 PC1 C2 O21 sing N N 243 PC1 C2 C3 sing N N 244 PC1 C2 H2 sing N N 245 PC1 O21 C21 sing N N 246 PC1 C21 O22 doub N N 247 PC1 C21 C22 sing N N 248 PC1 C22 C23 sing N N 249 PC1 C22 H221 sing N N 250 PC1 C22 H222 sing N N 251 PC1 C23 C24 sing N N 252 PC1 C23 H231 sing N N 253 PC1 C23 H232 sing N N 254 PC1 C24 C25 sing N N 255 PC1 C24 H241 sing N N 256 PC1 C24 H242 sing N N 257 PC1 C25 C26 sing N N 258 PC1 C25 H251 sing N N 259 PC1 C25 H252 sing N N 260 PC1 C26 C27 sing N N 261 PC1 C26 H261 sing N N 262 PC1 C26 H262 sing N N 263 PC1 C27 C28 sing N N 264 PC1 C27 H271 sing N N 265 PC1 C27 H272 sing N N 266 PC1 C28 C29 sing N N 267 PC1 C28 H281 sing N N 268 PC1 C28 H282 sing N N 269 PC1 C29 C2A sing N N 270 PC1 C29 H291 sing N N 271 PC1 C29 H292 sing N N 272 PC1 C2A C2B sing N N 273 PC1 C2A H2A1 sing N N 274 PC1 C2A H2A2 sing N N 275 PC1 C2B C2C sing N N 276 PC1 C2B H2B1 sing N N 277 PC1 C2B H2B2 sing N N 278 PC1 C2C C2D sing N N 279 PC1 C2C H2C1 sing N N 280 PC1 C2C H2C2 sing N N 281 PC1 C2D C2E sing N N 282 PC1 C2D H2D1 sing N N 283 PC1 C2D H2D2 sing N N 284 PC1 C2E C2F sing N N 285 PC1 C2E H2E1 sing N N 286 PC1 C2E H2E2 sing N N 287 PC1 C2F C2G sing N N 288 PC1 C2F H2F1 sing N N 289 PC1 C2F H2F2 sing N N 290 PC1 C2G C2H sing N N 291 PC1 C2G H2G1 sing N N 292 PC1 C2G H2G2 sing N N 293 PC1 C2H C2I sing N N 294 PC1 C2H H2H1 sing N N 295 PC1 C2H H2H2 sing N N 296 PC1 C2I H2I1 sing N N 297 PC1 C2I H2I2 sing N N 298 PC1 C2I H2I3 sing N N 299 PC1 C3 O31 sing N N 300 PC1 C3 H31 sing N N 301 PC1 C3 H32 sing N N 302 PC1 O31 C31 sing N N 303 PC1 C31 O32 doub N N 304 PC1 C31 C32 sing N N 305 PC1 C32 C33 sing N N 306 PC1 C32 H321 sing N N 307 PC1 C32 H322 sing N N 308 PC1 C33 C34 sing N N 309 PC1 C33 H331 sing N N 310 PC1 C33 H332 sing N N 311 PC1 C34 C35 sing N N 312 PC1 C34 H341 sing N N 313 PC1 C34 H342 sing N N 314 PC1 C35 C36 sing N N 315 PC1 C35 H351 sing N N 316 PC1 C35 H352 sing N N 317 PC1 C36 C37 sing N N 318 PC1 C36 H361 sing N N 319 PC1 C36 H362 sing N N 320 PC1 C37 C38 sing N N 321 PC1 C37 H371 sing N N 322 PC1 C37 H372 sing N N 323 PC1 C38 C39 sing N N 324 PC1 C38 H381 sing N N 325 PC1 C38 H382 sing N N 326 PC1 C39 C3A sing N N 327 PC1 C39 H391 sing N N 328 PC1 C39 H392 sing N N 329 PC1 C3A C3B sing N N 330 PC1 C3A H3A1 sing N N 331 PC1 C3A H3A2 sing N N 332 PC1 C3B C3C sing N N 333 PC1 C3B H3B1 sing N N 334 PC1 C3B H3B2 sing N N 335 PC1 C3C C3D sing N N 336 PC1 C3C H3C1 sing N N 337 PC1 C3C H3C2 sing N N 338 PC1 C3D C3E sing N N 339 PC1 C3D H3D1 sing N N 340 PC1 C3D H3D2 sing N N 341 PC1 C3E C3F sing N N 342 PC1 C3E H3E1 sing N N 343 PC1 C3E H3E2 sing N N 344 PC1 C3F C3G sing N N 345 PC1 C3F H3F1 sing N N 346 PC1 C3F H3F2 sing N N 347 PC1 C3G C3H sing N N 348 PC1 C3G H3G1 sing N N 349 PC1 C3G H3G2 sing N N 350 PC1 C3H C3I sing N N 351 PC1 C3H H3H1 sing N N 352 PC1 C3H H3H2 sing N N 353 PC1 C3I H3I1 sing N N 354 PC1 C3I H3I2 sing N N 355 PC1 C3I H3I3 sing N N 356 PHE N CA sing N N 357 PHE N H sing N N 358 PHE N H2 sing N N 359 PHE CA C sing N N 360 PHE CA CB sing N N 361 PHE CA HA sing N N 362 PHE C O doub N N 363 PHE C OXT sing N N 364 PHE CB CG sing N N 365 PHE CB HB2 sing N N 366 PHE CB HB3 sing N N 367 PHE CG CD1 doub Y N 368 PHE CG CD2 sing Y N 369 PHE CD1 CE1 sing Y N 370 PHE CD1 HD1 sing N N 371 PHE CD2 CE2 doub Y N 372 PHE CD2 HD2 sing N N 373 PHE CE1 CZ doub Y N 374 PHE CE1 HE1 sing N N 375 PHE CE2 CZ sing Y N 376 PHE CE2 HE2 sing N N 377 PHE CZ HZ sing N N 378 PHE OXT HXT sing N N 379 PRO N CA sing N N 380 PRO N CD sing N N 381 PRO N H sing N N 382 PRO CA C sing N N 383 PRO CA CB sing N N 384 PRO CA HA sing N N 385 PRO C O doub N N 386 PRO C OXT sing N N 387 PRO CB CG sing N N 388 PRO CB HB2 sing N N 389 PRO CB HB3 sing N N 390 PRO CG CD sing N N 391 PRO CG HG2 sing N N 392 PRO CG HG3 sing N N 393 PRO CD HD2 sing N N 394 PRO CD HD3 sing N N 395 PRO OXT HXT sing N N 396 RET C1 C2 sing N N 397 RET C1 C6 sing N N 398 RET C1 C16 sing N N 399 RET C1 C17 sing N N 400 RET C2 C3 sing N N 401 RET C2 H21 sing N N 402 RET C2 H22 sing N N 403 RET C3 C4 sing N N 404 RET C3 H31 sing N N 405 RET C3 H32 sing N N 406 RET C4 C5 sing N N 407 RET C4 H41 sing N N 408 RET C4 H42 sing N N 409 RET C5 C6 doub N N 410 RET C5 C18 sing N N 411 RET C6 C7 sing N N 412 RET C7 C8 doub N E 413 RET C7 H7 sing N N 414 RET C8 C9 sing N N 415 RET C8 H8 sing N N 416 RET C9 C10 doub N E 417 RET C9 C19 sing N N 418 RET C10 C11 sing N N 419 RET C10 H10 sing N N 420 RET C11 C12 doub N E 421 RET C11 H11 sing N N 422 RET C12 C13 sing N N 423 RET C12 H12 sing N N 424 RET C13 C14 doub N E 425 RET C13 C20 sing N N 426 RET C14 C15 sing N N 427 RET C14 H14 sing N N 428 RET C15 O1 doub N N 429 RET C15 H15 sing N N 430 RET C16 H161 sing N N 431 RET C16 H162 sing N N 432 RET C16 H163 sing N N 433 RET C17 H171 sing N N 434 RET C17 H172 sing N N 435 RET C17 H173 sing N N 436 RET C18 H181 sing N N 437 RET C18 H182 sing N N 438 RET C18 H183 sing N N 439 RET C19 H191 sing N N 440 RET C19 H192 sing N N 441 RET C19 H193 sing N N 442 RET C20 H201 sing N N 443 RET C20 H202 sing N N 444 RET C20 H203 sing N N 445 SER N CA sing N N 446 SER N H sing N N 447 SER N H2 sing N N 448 SER CA C sing N N 449 SER CA CB sing N N 450 SER CA HA sing N N 451 SER C O doub N N 452 SER C OXT sing N N 453 SER CB OG sing N N 454 SER CB HB2 sing N N 455 SER CB HB3 sing N N 456 SER OG HG sing N N 457 SER OXT HXT sing N N 458 THR N CA sing N N 459 THR N H sing N N 460 THR N H2 sing N N 461 THR CA C sing N N 462 THR CA CB sing N N 463 THR CA HA sing N N 464 THR C O doub N N 465 THR C OXT sing N N 466 THR CB OG1 sing N N 467 THR CB CG2 sing N N 468 THR CB HB sing N N 469 THR OG1 HG1 sing N N 470 THR CG2 HG21 sing N N 471 THR CG2 HG22 sing N N 472 THR CG2 HG23 sing N N 473 THR OXT HXT sing N N 474 TRP N CA sing N N 475 TRP N H sing N N 476 TRP N H2 sing N N 477 TRP CA C sing N N 478 TRP CA CB sing N N 479 TRP CA HA sing N N 480 TRP C O doub N N 481 TRP C OXT sing N N 482 TRP CB CG sing N N 483 TRP CB HB2 sing N N 484 TRP CB HB3 sing N N 485 TRP CG CD1 doub Y N 486 TRP CG CD2 sing Y N 487 TRP CD1 NE1 sing Y N 488 TRP CD1 HD1 sing N N 489 TRP CD2 CE2 doub Y N 490 TRP CD2 CE3 sing Y N 491 TRP NE1 CE2 sing Y N 492 TRP NE1 HE1 sing N N 493 TRP CE2 CZ2 sing Y N 494 TRP CE3 CZ3 doub Y N 495 TRP CE3 HE3 sing N N 496 TRP CZ2 CH2 doub Y N 497 TRP CZ2 HZ2 sing N N 498 TRP CZ3 CH2 sing Y N 499 TRP CZ3 HZ3 sing N N 500 TRP CH2 HH2 sing N N 501 TRP OXT HXT sing N N 502 TYR N CA sing N N 503 TYR N H sing N N 504 TYR N H2 sing N N 505 TYR CA C sing N N 506 TYR CA CB sing N N 507 TYR CA HA sing N N 508 TYR C O doub N N 509 TYR C OXT sing N N 510 TYR CB CG sing N N 511 TYR CB HB2 sing N N 512 TYR CB HB3 sing N N 513 TYR CG CD1 doub Y N 514 TYR CG CD2 sing Y N 515 TYR CD1 CE1 sing Y N 516 TYR CD1 HD1 sing N N 517 TYR CD2 CE2 doub Y N 518 TYR CD2 HD2 sing N N 519 TYR CE1 CZ doub Y N 520 TYR CE1 HE1 sing N N 521 TYR CE2 CZ sing Y N 522 TYR CE2 HE2 sing N N 523 TYR CZ OH sing N N 524 TYR OH HH sing N N 525 TYR OXT HXT sing N N 526 VAL N CA sing N N 527 VAL N H sing N N 528 VAL N H2 sing N N 529 VAL CA C sing N N 530 VAL CA CB sing N N 531 VAL CA HA sing N N 532 VAL C O doub N N 533 VAL C OXT sing N N 534 VAL CB CG1 sing N N 535 VAL CB CG2 sing N N 536 VAL CB HB sing N N 537 VAL CG1 HG11 sing N N 538 VAL CG1 HG12 sing N N 539 VAL CG1 HG13 sing N N 540 VAL CG2 HG21 sing N N 541 VAL CG2 HG22 sing N N 542 VAL CG2 HG23 sing N N 543 VAL OXT HXT sing N N 544 # _em_admin.current_status REL _em_admin.deposition_date 2025-12-09 _em_admin.deposition_site PDBJ _em_admin.entry_id 21DE _em_admin.last_update 2026-11-11 _em_admin.map_release_date 2026-11-11 _em_admin.title 'MsSzR methanogenic Schizorhodopsin' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 90427 _em_entity_assembly_naturalsource.organism 'Methanoculleus sp.' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 3.3.2 ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.19_4092 ? 'IMAGE ACQUISITION' ? 3 ? ? 1 ? ? ? MASKING ? 4 ? ? ? ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 6 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 7 ? ? ? ? ? ? 'MODEL FITTING' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC 3.3.2 ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science (JSPS)' Japan 24K23232 1 'Japan Society for the Promotion of Science (JSPS)' Japan 24KJ0909 2 'Japan Society for the Promotion of Science (JSPS)' Japan 24K23073 3 'Japan Society for the Promotion of Science (JSPS)' Japan 23K05007 4 'Japan Society for the Promotion of Science (JSPS)' Japan 22K19371 5 'Japan Society for the Promotion of Science (JSPS)' Japan 23K24014 6 'Japan Society for the Promotion of Science (JSPS)' Japan 25K02397 7 'Japan Society for the Promotion of Science (JSPS)' Japan 24H02268 8 'Japan Society for the Promotion of Science (JSPS)' Japan 25H00424 9 'Japan Society for the Promotion of Science (JSPS)' Japan 21H05037 10 'Japan Agency for Medical Research and Development (AMED)' Japan JP233fa627001 11 'Japan Agency for Medical Research and Development (AMED)' Japan JP24ama121002 12 'Japan Agency for Medical Research and Development (AMED)' Japan JP24ama121012 13 # _atom_sites.entry_id 21DE _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_ #