data_21NT # _entry.id 21NT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.414 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 21NT pdb_000021nt 10.2210/pdb21nt/pdb WWPDB D_1300065592 ? ? EMDB EMD-67850 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-06-24 ? 2 'EM metadata' 1 0 2026-06-24 ? 3 'Half map' 1 0 2026-06-24 1 4 'Half map' 1 0 2026-06-24 2 5 Image 1 0 2026-06-24 ? 6 'Primary map' 1 0 2026-06-24 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Half map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 Image repository 'Initial release' ? ? 6 6 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 21NT _pdbx_database_status.recvd_initial_deposition_date 2025-12-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of TLP-3' _pdbx_database_related.db_id EMD-67850 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email nyan@tsinghua.edu.cn _pdbx_contact_author.name_first Nieng _pdbx_contact_author.name_last Yan _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4829-7416 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yan, N.' 1 ? 'Li, Z.' 2 ? 'Wang, T.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Chem Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2451-9456 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 33 _citation.language ? _citation.page_first 699 _citation.page_last 710.e2 _citation.title 'CryoSeek identification of glycofibrils with diverse compositions and structural assemblies.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2026.03.008 _citation.pdbx_database_id_PubMed 42013841 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, Z.' 1 ? primary 'Wang, T.' 2 ? primary 'Sun, Y.' 3 ? primary 'Xu, K.' 4 ? primary 'Huang, W.' 5 ? primary 'Zhang, Q.C.' 6 ? primary 'Yan, C.' 7 ? primary 'Hu, M.' 8 ? primary 'Yan, N.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat TLP-3 1828.648 3 ? ? ? ? 2 branched man ;beta-D-xylopyranose-(1-2)-beta-D-xylopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-[beta-D-xylopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-beta-D-xylopyranose-(1-4)][alpha-L-arabinofuranose-(1-3)]alpha-D-mannopyranose ; 1206.064 27 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGSGGSGGSGGSGGSGGSGGSGGSGGS _entity_poly.pdbx_seq_one_letter_code_can GGSGGSGGSGGSGGSGGSGGSGGSGGS _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 SER n 1 4 GLY n 1 5 GLY n 1 6 SER n 1 7 GLY n 1 8 GLY n 1 9 SER n 1 10 GLY n 1 11 GLY n 1 12 SER n 1 13 GLY n 1 14 GLY n 1 15 SER n 1 16 GLY n 1 17 GLY n 1 18 SER n 1 19 GLY n 1 20 GLY n 1 21 SER n 1 22 GLY n 1 23 GLY n 1 24 SER n 1 25 GLY n 1 26 GLY n 1 27 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 27 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'algae metagenome' _entity_src_nat.pdbx_ncbi_taxonomy_id 1300146 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DXylpb1-2DXylpb1-3DGlcpNAcb1-2[DXylpb1-3DManpa1-4DXylpb1-4][LArafa1-3]DManpa1-' 'Glycam Condensed Sequence' GMML 1.0 2 2 ;WURCS=2.0/4,8,7/[a1122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a212h-1b_1-5][a211h-1a_1-4]/1-2-3-3-4-3-1-3/a2-b1_a3-e1_a4-f1_b3-c1_c2-d1_f4-g1_g3-h1 ; WURCS PDB2Glycan 1.1.0 3 2 ;[]{[(3+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{[(3+1)][b-D-Xylp]{[(2+1)][b-D-Xylp]{}}}[(3+1)][a-L-Araf]{}[(4+1)][b-D-Xylp]{[(4+1)][a-D-Manp]{[(3+1)][b-D-Xylp]{}}}}} ; LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 MAN O2 HO2 sing ? 2 2 3 XYP C1 O1 2 NAG O3 HO3 sing ? 3 2 4 XYP C1 O1 3 XYP O2 HO2 sing ? 4 2 5 XYP C1 O1 1 MAN O4 HO4 sing ? 5 2 6 MAN C1 O1 5 XYP O4 HO4 sing ? 6 2 7 XYP C1 O1 6 MAN O3 HO3 sing ? 7 2 8 AHR C1 O1 1 MAN O3 HO3 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AHR 'L-saccharide, alpha linking' . alpha-L-arabinofuranose 'alpha-L-arabinose; L-arabinose; arabinose' 'C5 H10 O5' 150.130 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 XYP 'D-saccharide, beta linking' . beta-D-xylopyranose 'beta-D-xylose; D-xylose; xylose' 'C5 H10 O5' 150.130 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AHR 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LArafa AHR 'COMMON NAME' GMML 1.0 a-L-arabinofuranose AHR 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Araf AHR 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Ara MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc XYP 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DXylpb XYP 'COMMON NAME' GMML 1.0 b-D-xylopyranose XYP 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Xylp XYP 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Xyl # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 SER 27 27 27 SER SER A . n B 1 1 GLY 1 1 1 GLY GLY B . n B 1 2 GLY 2 2 2 GLY GLY B . n B 1 3 SER 3 3 3 SER SER B . n B 1 4 GLY 4 4 4 GLY GLY B . n B 1 5 GLY 5 5 5 GLY GLY B . n B 1 6 SER 6 6 6 SER SER B . n B 1 7 GLY 7 7 7 GLY GLY B . n B 1 8 GLY 8 8 8 GLY GLY B . n B 1 9 SER 9 9 9 SER SER B . n B 1 10 GLY 10 10 10 GLY GLY B . n B 1 11 GLY 11 11 11 GLY GLY B . n B 1 12 SER 12 12 12 SER SER B . n B 1 13 GLY 13 13 13 GLY GLY B . n B 1 14 GLY 14 14 14 GLY GLY B . n B 1 15 SER 15 15 15 SER SER B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 SER 18 18 18 SER SER B . n B 1 19 GLY 19 19 19 GLY GLY B . n B 1 20 GLY 20 20 20 GLY GLY B . n B 1 21 SER 21 21 21 SER SER B . n B 1 22 GLY 22 22 22 GLY GLY B . n B 1 23 GLY 23 23 23 GLY GLY B . n B 1 24 SER 24 24 24 SER SER B . n B 1 25 GLY 25 25 25 GLY GLY B . n B 1 26 GLY 26 26 26 GLY GLY B . n B 1 27 SER 27 27 27 SER SER B . n C 1 1 GLY 1 1 1 GLY GLY C . n C 1 2 GLY 2 2 2 GLY GLY C . n C 1 3 SER 3 3 3 SER SER C . n C 1 4 GLY 4 4 4 GLY GLY C . n C 1 5 GLY 5 5 5 GLY GLY C . n C 1 6 SER 6 6 6 SER SER C . n C 1 7 GLY 7 7 7 GLY GLY C . n C 1 8 GLY 8 8 8 GLY GLY C . n C 1 9 SER 9 9 9 SER SER C . n C 1 10 GLY 10 10 10 GLY GLY C . n C 1 11 GLY 11 11 11 GLY GLY C . n C 1 12 SER 12 12 12 SER SER C . n C 1 13 GLY 13 13 13 GLY GLY C . n C 1 14 GLY 14 14 14 GLY GLY C . n C 1 15 SER 15 15 15 SER SER C . n C 1 16 GLY 16 16 16 GLY GLY C . n C 1 17 GLY 17 17 17 GLY GLY C . n C 1 18 SER 18 18 18 SER SER C . n C 1 19 GLY 19 19 19 GLY GLY C . n C 1 20 GLY 20 20 20 GLY GLY C . n C 1 21 SER 21 21 21 SER SER C . n C 1 22 GLY 22 22 22 GLY GLY C . n C 1 23 GLY 23 23 23 GLY GLY C . n C 1 24 SER 24 24 24 SER SER C . n C 1 25 GLY 25 25 25 GLY GLY C . n C 1 26 GLY 26 26 26 GLY GLY C . n C 1 27 SER 27 27 27 SER SER C . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero D 2 MAN 1 D MAN 1 D MAN 1 n D 2 NAG 2 D NAG 2 D NAG 2 n D 2 XYP 3 D XYP 3 D XYP 3 n D 2 XYP 4 D XYP 4 D XYP 4 n D 2 XYP 5 D XYP 5 D XYP 5 n D 2 MAN 6 D MAN 6 D MAN 6 n D 2 XYP 7 D XYP 7 D XYP 7 n D 2 AHR 8 D AHR 8 D AHR 8 n E 2 MAN 1 E MAN 1 E MAN 1 n E 2 NAG 2 E NAG 2 E NAG 2 n E 2 XYP 3 E XYP 3 E XYP 3 n E 2 XYP 4 E XYP 4 E XYP 4 n E 2 XYP 5 E XYP 5 E XYP 5 n E 2 MAN 6 E MAN 6 E MAN 6 n E 2 XYP 7 E XYP 7 E XYP 7 n E 2 AHR 8 E AHR 8 E AHR 8 n F 2 MAN 1 F MAN 1 F MAN 1 n F 2 NAG 2 F NAG 2 F NAG 2 n F 2 XYP 3 F XYP 3 F XYP 3 n F 2 XYP 4 F XYP 4 F XYP 4 n F 2 XYP 5 F XYP 5 F XYP 5 n F 2 MAN 6 F MAN 6 F MAN 6 n F 2 XYP 7 F XYP 7 F XYP 7 n F 2 AHR 8 F AHR 8 F AHR 8 n G 2 MAN 1 G MAN 1 G MAN 1 n G 2 NAG 2 G NAG 2 G NAG 2 n G 2 XYP 3 G XYP 3 G XYP 3 n G 2 XYP 4 G XYP 4 G XYP 4 n G 2 XYP 5 G XYP 5 G XYP 5 n G 2 MAN 6 G MAN 6 G MAN 6 n G 2 XYP 7 G XYP 7 G XYP 7 n G 2 AHR 8 G AHR 8 G AHR 8 n H 2 MAN 1 H MAN 1 H MAN 1 n H 2 NAG 2 H NAG 2 H NAG 2 n H 2 XYP 3 H XYP 3 H XYP 3 n H 2 XYP 4 H XYP 4 H XYP 4 n H 2 XYP 5 H XYP 5 H XYP 5 n H 2 MAN 6 H MAN 6 H MAN 6 n H 2 XYP 7 H XYP 7 H XYP 7 n H 2 AHR 8 H AHR 8 H AHR 8 n I 2 MAN 1 I MAN 1 I MAN 1 n I 2 NAG 2 I NAG 2 I NAG 2 n I 2 XYP 3 I XYP 3 I XYP 3 n I 2 XYP 4 I XYP 4 I XYP 4 n I 2 XYP 5 I XYP 5 I XYP 5 n I 2 MAN 6 I MAN 6 I MAN 6 n I 2 XYP 7 I XYP 7 I XYP 7 n I 2 AHR 8 I AHR 8 I AHR 8 n J 2 MAN 1 J MAN 1 J MAN 1 n J 2 NAG 2 J NAG 2 J NAG 2 n J 2 XYP 3 J XYP 3 J XYP 3 n J 2 XYP 4 J XYP 4 J XYP 4 n J 2 XYP 5 J XYP 5 J XYP 5 n J 2 MAN 6 J MAN 6 J MAN 6 n J 2 XYP 7 J XYP 7 J XYP 7 n J 2 AHR 8 J AHR 8 J AHR 8 n K 2 MAN 1 K MAN 1 K MAN 1 n K 2 NAG 2 K NAG 2 K NAG 2 n K 2 XYP 3 K XYP 3 K XYP 3 n K 2 XYP 4 K XYP 4 K XYP 4 n K 2 XYP 5 K XYP 5 K XYP 5 n K 2 MAN 6 K MAN 6 K MAN 6 n K 2 XYP 7 K XYP 7 K XYP 7 n K 2 AHR 8 K AHR 8 K AHR 8 n L 2 MAN 1 L MAN 1 L MAN 1 n L 2 NAG 2 L NAG 2 L NAG 2 n L 2 XYP 3 L XYP 3 L XYP 3 n L 2 XYP 4 L XYP 4 L XYP 4 n L 2 XYP 5 L XYP 5 L XYP 5 n L 2 MAN 6 L MAN 6 L MAN 6 n L 2 XYP 7 L XYP 7 L XYP 7 n L 2 AHR 8 L AHR 8 L AHR 8 n M 2 MAN 1 M MAN 1 M MAN 1 n M 2 NAG 2 M NAG 2 M NAG 2 n M 2 XYP 3 M XYP 3 M XYP 3 n M 2 XYP 4 M XYP 4 M XYP 4 n M 2 XYP 5 M XYP 5 M XYP 5 n M 2 MAN 6 M MAN 6 M MAN 6 n M 2 XYP 7 M XYP 7 M XYP 7 n M 2 AHR 8 M AHR 8 M AHR 8 n N 2 MAN 1 N MAN 1 N MAN 1 n N 2 NAG 2 N NAG 2 N NAG 2 n N 2 XYP 3 N XYP 3 N XYP 3 n N 2 XYP 4 N XYP 4 N XYP 4 n N 2 XYP 5 N XYP 5 N XYP 5 n N 2 MAN 6 N MAN 6 N MAN 6 n N 2 XYP 7 N XYP 7 N XYP 7 n N 2 AHR 8 N AHR 8 N AHR 8 n O 2 MAN 1 O MAN 1 O MAN 1 n O 2 NAG 2 O NAG 2 O NAG 2 n O 2 XYP 3 O XYP 3 O XYP 3 n O 2 XYP 4 O XYP 4 O XYP 4 n O 2 XYP 5 O XYP 5 O XYP 5 n O 2 MAN 6 O MAN 6 O MAN 6 n O 2 XYP 7 O XYP 7 O XYP 7 n O 2 AHR 8 O AHR 8 O AHR 8 n P 2 MAN 1 P MAN 1 P MAN 1 n P 2 NAG 2 P NAG 2 P NAG 2 n P 2 XYP 3 P XYP 3 P XYP 3 n P 2 XYP 4 P XYP 4 P XYP 4 n P 2 XYP 5 P XYP 5 P XYP 5 n P 2 MAN 6 P MAN 6 P MAN 6 n P 2 XYP 7 P XYP 7 P XYP 7 n P 2 AHR 8 P AHR 8 P AHR 8 n Q 2 MAN 1 Q MAN 1 Q MAN 1 n Q 2 NAG 2 Q NAG 2 Q NAG 2 n Q 2 XYP 3 Q XYP 3 Q XYP 3 n Q 2 XYP 4 Q XYP 4 Q XYP 4 n Q 2 XYP 5 Q XYP 5 Q XYP 5 n Q 2 MAN 6 Q MAN 6 Q MAN 6 n Q 2 XYP 7 Q XYP 7 Q XYP 7 n Q 2 AHR 8 Q AHR 8 Q AHR 8 n R 2 MAN 1 R MAN 1 R MAN 1 n R 2 NAG 2 R NAG 2 R NAG 2 n R 2 XYP 3 R XYP 3 R XYP 3 n R 2 XYP 4 R XYP 4 R XYP 4 n R 2 XYP 5 R XYP 5 R XYP 5 n R 2 MAN 6 R MAN 6 R MAN 6 n R 2 XYP 7 R XYP 7 R XYP 7 n R 2 AHR 8 R AHR 8 R AHR 8 n S 2 MAN 1 S MAN 1 S MAN 1 n S 2 NAG 2 S NAG 2 S NAG 2 n S 2 XYP 3 S XYP 3 S XYP 3 n S 2 XYP 4 S XYP 4 S XYP 4 n S 2 XYP 5 S XYP 5 S XYP 5 n S 2 MAN 6 S MAN 6 S MAN 6 n S 2 XYP 7 S XYP 7 S XYP 7 n S 2 AHR 8 S AHR 8 S AHR 8 n T 2 MAN 1 T MAN 1 T MAN 1 n T 2 NAG 2 T NAG 2 T NAG 2 n T 2 XYP 3 T XYP 3 T XYP 3 n T 2 XYP 4 T XYP 4 T XYP 4 n T 2 XYP 5 T XYP 5 T XYP 5 n T 2 MAN 6 T MAN 6 T MAN 6 n T 2 XYP 7 T XYP 7 T XYP 7 n T 2 AHR 8 T AHR 8 T AHR 8 n U 2 MAN 1 U MAN 1 U MAN 1 n U 2 NAG 2 U NAG 2 U NAG 2 n U 2 XYP 3 U XYP 3 U XYP 3 n U 2 XYP 4 U XYP 4 U XYP 4 n U 2 XYP 5 U XYP 5 U XYP 5 n U 2 MAN 6 U MAN 6 U MAN 6 n U 2 XYP 7 U XYP 7 U XYP 7 n U 2 AHR 8 U AHR 8 U AHR 8 n V 2 MAN 1 V MAN 1 V MAN 1 n V 2 NAG 2 V NAG 2 V NAG 2 n V 2 XYP 3 V XYP 3 V XYP 3 n V 2 XYP 4 V XYP 4 V XYP 4 n V 2 XYP 5 V XYP 5 V XYP 5 n V 2 MAN 6 V MAN 6 V MAN 6 n V 2 XYP 7 V XYP 7 V XYP 7 n V 2 AHR 8 V AHR 8 V AHR 8 n W 2 MAN 1 W MAN 1 W MAN 1 n W 2 NAG 2 W NAG 2 W NAG 2 n W 2 XYP 3 W XYP 3 W XYP 3 n W 2 XYP 4 W XYP 4 W XYP 4 n W 2 XYP 5 W XYP 5 W XYP 5 n W 2 MAN 6 W MAN 6 W MAN 6 n W 2 XYP 7 W XYP 7 W XYP 7 n W 2 AHR 8 W AHR 8 W AHR 8 n X 2 MAN 1 X MAN 1 X MAN 1 n X 2 NAG 2 X NAG 2 X NAG 2 n X 2 XYP 3 X XYP 3 X XYP 3 n X 2 XYP 4 X XYP 4 X XYP 4 n X 2 XYP 5 X XYP 5 X XYP 5 n X 2 MAN 6 X MAN 6 X MAN 6 n X 2 XYP 7 X XYP 7 X XYP 7 n X 2 AHR 8 X AHR 8 X AHR 8 n Y 2 MAN 1 Y MAN 1 Y MAN 1 n Y 2 NAG 2 Y NAG 2 Y NAG 2 n Y 2 XYP 3 Y XYP 3 Y XYP 3 n Y 2 XYP 4 Y XYP 4 Y XYP 4 n Y 2 XYP 5 Y XYP 5 Y XYP 5 n Y 2 MAN 6 Y MAN 6 Y MAN 6 n Y 2 XYP 7 Y XYP 7 Y XYP 7 n Y 2 AHR 8 Y AHR 8 Y AHR 8 n Z 2 MAN 1 Z MAN 1 Z MAN 1 n Z 2 NAG 2 Z NAG 2 Z NAG 2 n Z 2 XYP 3 Z XYP 3 Z XYP 3 n Z 2 XYP 4 Z XYP 4 Z XYP 4 n Z 2 XYP 5 Z XYP 5 Z XYP 5 n Z 2 MAN 6 Z MAN 6 Z MAN 6 n Z 2 XYP 7 Z XYP 7 Z XYP 7 n Z 2 AHR 8 Z AHR 8 Z AHR 8 n AA 2 MAN 1 a MAN 1 a MAN 1 n AA 2 NAG 2 a NAG 2 a NAG 2 n AA 2 XYP 3 a XYP 3 a XYP 3 n AA 2 XYP 4 a XYP 4 a XYP 4 n AA 2 XYP 5 a XYP 5 a XYP 5 n AA 2 MAN 6 a MAN 6 a MAN 6 n AA 2 XYP 7 a XYP 7 a XYP 7 n AA 2 AHR 8 a AHR 8 a AHR 8 n BA 2 MAN 1 b MAN 1 b MAN 1 n BA 2 NAG 2 b NAG 2 b NAG 2 n BA 2 XYP 3 b XYP 3 b XYP 3 n BA 2 XYP 4 b XYP 4 b XYP 4 n BA 2 XYP 5 b XYP 5 b XYP 5 n BA 2 MAN 6 b MAN 6 b MAN 6 n BA 2 XYP 7 b XYP 7 b XYP 7 n BA 2 AHR 8 b AHR 8 b AHR 8 n CA 2 MAN 1 c MAN 1 c MAN 1 n CA 2 NAG 2 c NAG 2 c NAG 2 n CA 2 XYP 3 c XYP 3 c XYP 3 n CA 2 XYP 4 c XYP 4 c XYP 4 n CA 2 XYP 5 c XYP 5 c XYP 5 n CA 2 MAN 6 c MAN 6 c MAN 6 n CA 2 XYP 7 c XYP 7 c XYP 7 n CA 2 AHR 8 c AHR 8 c AHR 8 n DA 2 MAN 1 d MAN 1 d MAN 1 n DA 2 NAG 2 d NAG 2 d NAG 2 n DA 2 XYP 3 d XYP 3 d XYP 3 n DA 2 XYP 4 d XYP 4 d XYP 4 n DA 2 XYP 5 d XYP 5 d XYP 5 n DA 2 MAN 6 d MAN 6 d MAN 6 n DA 2 XYP 7 d XYP 7 d XYP 7 n DA 2 AHR 8 d AHR 8 d AHR 8 n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 21NT _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 21NT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 21NT _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 21NT _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.5 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 2562 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 1.111 ? 3474 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 11.000 ? 1482 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.038 ? 810 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.002 ? 105 ? f_plane_restr ? ? ? # _struct.entry_id 21NT _struct.title 'Cryo-EM structure of TLP-3' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 21NT _struct_keywords.text 'Glycofibril, CARBOHYDRATE' _struct_keywords.pdbx_keywords CARBOHYDRATE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 2 ? S N N 2 ? T N N 2 ? U N N 2 ? V N N 2 ? W N N 2 ? X N N 2 ? Y N N 2 ? Z N N 2 ? AA N N 2 ? BA N N 2 ? CA N N 2 ? DA N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 21NT _struct_ref.pdbx_db_accession 21NT _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 21NT A 1 ? 27 ? 21NT 1 ? 27 ? 1 27 2 1 21NT B 1 ? 27 ? 21NT 1 ? 27 ? 1 27 3 1 21NT C 1 ? 27 ? 21NT 1 ? 27 ? 1 27 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A SER 3 OG ? ? ? 1_555 D MAN . C1 ? ? A SER 3 D MAN 1 1_555 ? ? ? ? ? ? ? 1.429 ? O-Glycosylation covale2 covale one ? A SER 6 OG ? ? ? 1_555 E MAN . C1 ? ? A SER 6 E MAN 1 1_555 ? ? ? ? ? ? ? 1.429 ? O-Glycosylation covale3 covale one ? A SER 9 OG ? ? ? 1_555 F MAN . C1 ? ? A SER 9 F MAN 1 1_555 ? ? ? ? ? ? ? 1.430 ? O-Glycosylation covale4 covale one ? A SER 12 OG ? ? ? 1_555 G MAN . C1 ? ? A SER 12 G MAN 1 1_555 ? ? ? ? ? ? ? 1.430 ? O-Glycosylation covale5 covale one ? A SER 15 OG ? ? ? 1_555 H MAN . C1 ? ? A SER 15 H MAN 1 1_555 ? ? ? ? ? ? ? 1.430 ? O-Glycosylation covale6 covale one ? A SER 18 OG ? ? ? 1_555 I MAN . C1 ? ? A SER 18 I MAN 1 1_555 ? ? ? ? ? ? ? 1.429 ? O-Glycosylation covale7 covale one ? A SER 21 OG ? ? ? 1_555 J MAN . C1 ? ? A SER 21 J MAN 1 1_555 ? ? ? ? ? ? ? 1.431 ? O-Glycosylation covale8 covale one ? A SER 24 OG ? ? ? 1_555 K MAN . C1 ? ? A SER 24 K MAN 1 1_555 ? ? ? ? ? ? ? 1.430 ? O-Glycosylation covale9 covale one ? A SER 27 OG ? ? ? 1_555 L MAN . C1 ? ? A SER 27 L MAN 1 1_555 ? ? ? ? ? ? ? 1.430 ? O-Glycosylation covale10 covale one ? B SER 3 OG ? ? ? 1_555 M MAN . C1 ? ? B SER 3 M MAN 1 1_555 ? ? ? ? ? ? ? 1.428 ? O-Glycosylation covale11 covale one ? B SER 6 OG ? ? ? 1_555 N MAN . C1 ? ? B SER 6 N MAN 1 1_555 ? ? ? ? ? ? ? 1.429 ? O-Glycosylation covale12 covale one ? B SER 9 OG ? ? ? 1_555 O MAN . C1 ? ? B SER 9 O MAN 1 1_555 ? ? ? ? ? ? ? 1.431 ? O-Glycosylation covale13 covale one ? B SER 12 OG ? ? ? 1_555 P MAN . C1 ? ? B SER 12 P MAN 1 1_555 ? ? ? ? ? ? ? 1.430 ? O-Glycosylation covale14 covale one ? B SER 15 OG ? ? ? 1_555 Q MAN . C1 ? ? B SER 15 Q MAN 1 1_555 ? ? ? ? ? ? ? 1.431 ? O-Glycosylation covale15 covale one ? B SER 18 OG ? ? ? 1_555 R MAN . C1 ? ? B SER 18 R MAN 1 1_555 ? ? ? ? ? ? ? 1.429 ? O-Glycosylation covale16 covale one ? B SER 21 OG ? ? ? 1_555 S MAN . C1 ? ? B SER 21 S MAN 1 1_555 ? ? ? ? ? ? ? 1.430 ? O-Glycosylation covale17 covale one ? B SER 24 OG ? ? ? 1_555 T MAN . C1 ? ? B SER 24 T MAN 1 1_555 ? ? ? ? ? ? ? 1.429 ? O-Glycosylation covale18 covale one ? B SER 27 OG ? ? ? 1_555 U MAN . C1 ? ? B SER 27 U MAN 1 1_555 ? ? ? ? ? ? ? 1.429 ? O-Glycosylation covale19 covale one ? C SER 3 OG ? ? ? 1_555 V MAN . C1 ? ? C SER 3 V MAN 1 1_555 ? ? ? ? ? ? ? 1.430 ? O-Glycosylation covale20 covale one ? C SER 6 OG ? ? ? 1_555 W MAN . C1 ? ? C SER 6 W MAN 1 1_555 ? ? ? ? ? ? ? 1.431 ? O-Glycosylation covale21 covale one ? C SER 9 OG ? ? ? 1_555 X MAN . C1 ? ? C SER 9 X MAN 1 1_555 ? ? ? ? ? ? ? 1.430 ? O-Glycosylation covale22 covale one ? C SER 12 OG ? ? ? 1_555 Y MAN . C1 ? ? C SER 12 Y MAN 1 1_555 ? ? ? ? ? ? ? 1.429 ? O-Glycosylation covale23 covale one ? C SER 15 OG ? ? ? 1_555 Z MAN . C1 ? ? C SER 15 Z MAN 1 1_555 ? ? ? ? ? ? ? 1.430 ? O-Glycosylation covale24 covale one ? C SER 18 OG ? ? ? 1_555 AA MAN . C1 ? ? C SER 18 a MAN 1 1_555 ? ? ? ? ? ? ? 1.430 ? O-Glycosylation covale25 covale one ? C SER 21 OG ? ? ? 1_555 BA MAN . C1 ? ? C SER 21 b MAN 1 1_555 ? ? ? ? ? ? ? 1.430 ? O-Glycosylation covale26 covale one ? C SER 24 OG ? ? ? 1_555 CA MAN . C1 ? ? C SER 24 c MAN 1 1_555 ? ? ? ? ? ? ? 1.430 ? O-Glycosylation covale27 covale one ? C SER 27 OG ? ? ? 1_555 DA MAN . C1 ? ? C SER 27 d MAN 1 1_555 ? ? ? ? ? ? ? 1.430 ? O-Glycosylation covale28 covale both ? D MAN . O2 ? ? ? 1_555 D NAG . C1 ? ? D MAN 1 D NAG 2 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale29 covale both ? D MAN . O4 ? ? ? 1_555 D XYP . C1 ? ? D MAN 1 D XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale30 covale both ? D MAN . O3 ? ? ? 1_555 D AHR . C1 ? ? D MAN 1 D AHR 8 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale31 covale both ? D NAG . O3 ? ? ? 1_555 D XYP . C1 ? ? D NAG 2 D XYP 3 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale32 covale both ? D XYP . O2 ? ? ? 1_555 D XYP . C1 ? ? D XYP 3 D XYP 4 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale33 covale both ? D XYP . O4 ? ? ? 1_555 D MAN . C1 ? ? D XYP 5 D MAN 6 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale34 covale both ? D MAN . O3 ? ? ? 1_555 D XYP . C1 ? ? D MAN 6 D XYP 7 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale35 covale both ? E MAN . O2 ? ? ? 1_555 E NAG . C1 ? ? E MAN 1 E NAG 2 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale36 covale both ? E MAN . O4 ? ? ? 1_555 E XYP . C1 ? ? E MAN 1 E XYP 5 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale37 covale both ? E MAN . O3 ? ? ? 1_555 E AHR . C1 ? ? E MAN 1 E AHR 8 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale38 covale both ? E NAG . O3 ? ? ? 1_555 E XYP . C1 ? ? E NAG 2 E XYP 3 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale39 covale both ? E XYP . O2 ? ? ? 1_555 E XYP . C1 ? ? E XYP 3 E XYP 4 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale40 covale both ? E XYP . O4 ? ? ? 1_555 E MAN . C1 ? ? E XYP 5 E MAN 6 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale41 covale both ? E MAN . O3 ? ? ? 1_555 E XYP . C1 ? ? E MAN 6 E XYP 7 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale42 covale both ? F MAN . O2 ? ? ? 1_555 F NAG . C1 ? ? F MAN 1 F NAG 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale43 covale both ? F MAN . O4 ? ? ? 1_555 F XYP . C1 ? ? F MAN 1 F XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale44 covale both ? F MAN . O3 ? ? ? 1_555 F AHR . C1 ? ? F MAN 1 F AHR 8 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale45 covale both ? F NAG . O3 ? ? ? 1_555 F XYP . C1 ? ? F NAG 2 F XYP 3 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale46 covale both ? F XYP . O2 ? ? ? 1_555 F XYP . C1 ? ? F XYP 3 F XYP 4 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale47 covale both ? F XYP . O4 ? ? ? 1_555 F MAN . C1 ? ? F XYP 5 F MAN 6 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale48 covale both ? F MAN . O3 ? ? ? 1_555 F XYP . C1 ? ? F MAN 6 F XYP 7 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale49 covale both ? G MAN . O2 ? ? ? 1_555 G NAG . C1 ? ? G MAN 1 G NAG 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale50 covale both ? G MAN . O4 ? ? ? 1_555 G XYP . C1 ? ? G MAN 1 G XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale51 covale both ? G MAN . O3 ? ? ? 1_555 G AHR . C1 ? ? G MAN 1 G AHR 8 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale52 covale both ? G NAG . O3 ? ? ? 1_555 G XYP . C1 ? ? G NAG 2 G XYP 3 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale53 covale both ? G XYP . O2 ? ? ? 1_555 G XYP . C1 ? ? G XYP 3 G XYP 4 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale54 covale both ? G XYP . O4 ? ? ? 1_555 G MAN . C1 ? ? G XYP 5 G MAN 6 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale55 covale both ? G MAN . O3 ? ? ? 1_555 G XYP . C1 ? ? G MAN 6 G XYP 7 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale56 covale both ? H MAN . O2 ? ? ? 1_555 H NAG . C1 ? ? H MAN 1 H NAG 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale57 covale both ? H MAN . O4 ? ? ? 1_555 H XYP . C1 ? ? H MAN 1 H XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale58 covale both ? H MAN . O3 ? ? ? 1_555 H AHR . C1 ? ? H MAN 1 H AHR 8 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale59 covale both ? H NAG . O3 ? ? ? 1_555 H XYP . C1 ? ? H NAG 2 H XYP 3 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale60 covale both ? H XYP . O2 ? ? ? 1_555 H XYP . C1 ? ? H XYP 3 H XYP 4 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale61 covale both ? H XYP . O4 ? ? ? 1_555 H MAN . C1 ? ? H XYP 5 H MAN 6 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale62 covale both ? H MAN . O3 ? ? ? 1_555 H XYP . C1 ? ? H MAN 6 H XYP 7 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale63 covale both ? I MAN . O2 ? ? ? 1_555 I NAG . C1 ? ? I MAN 1 I NAG 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale64 covale both ? I MAN . O4 ? ? ? 1_555 I XYP . C1 ? ? I MAN 1 I XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale65 covale both ? I MAN . O3 ? ? ? 1_555 I AHR . C1 ? ? I MAN 1 I AHR 8 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale66 covale both ? I NAG . O3 ? ? ? 1_555 I XYP . C1 ? ? I NAG 2 I XYP 3 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale67 covale both ? I XYP . O2 ? ? ? 1_555 I XYP . C1 ? ? I XYP 3 I XYP 4 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale68 covale both ? I XYP . O4 ? ? ? 1_555 I MAN . C1 ? ? I XYP 5 I MAN 6 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale69 covale both ? I MAN . O3 ? ? ? 1_555 I XYP . C1 ? ? I MAN 6 I XYP 7 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale70 covale both ? J MAN . O2 ? ? ? 1_555 J NAG . C1 ? ? J MAN 1 J NAG 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale71 covale both ? J MAN . O4 ? ? ? 1_555 J XYP . C1 ? ? J MAN 1 J XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale72 covale both ? J MAN . O3 ? ? ? 1_555 J AHR . C1 ? ? J MAN 1 J AHR 8 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale73 covale both ? J NAG . O3 ? ? ? 1_555 J XYP . C1 ? ? J NAG 2 J XYP 3 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale74 covale both ? J XYP . O2 ? ? ? 1_555 J XYP . C1 ? ? J XYP 3 J XYP 4 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale75 covale both ? J XYP . O4 ? ? ? 1_555 J MAN . C1 ? ? J XYP 5 J MAN 6 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale76 covale both ? J MAN . O3 ? ? ? 1_555 J XYP . C1 ? ? J MAN 6 J XYP 7 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale77 covale both ? K MAN . O2 ? ? ? 1_555 K NAG . C1 ? ? K MAN 1 K NAG 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale78 covale both ? K MAN . O4 ? ? ? 1_555 K XYP . C1 ? ? K MAN 1 K XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale79 covale both ? K MAN . O3 ? ? ? 1_555 K AHR . C1 ? ? K MAN 1 K AHR 8 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale80 covale both ? K NAG . O3 ? ? ? 1_555 K XYP . C1 ? ? K NAG 2 K XYP 3 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale81 covale both ? K XYP . O2 ? ? ? 1_555 K XYP . C1 ? ? K XYP 3 K XYP 4 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale82 covale both ? K XYP . O4 ? ? ? 1_555 K MAN . C1 ? ? K XYP 5 K MAN 6 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale83 covale both ? K MAN . O3 ? ? ? 1_555 K XYP . C1 ? ? K MAN 6 K XYP 7 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale84 covale both ? L MAN . O2 ? ? ? 1_555 L NAG . C1 ? ? L MAN 1 L NAG 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale85 covale both ? L MAN . O4 ? ? ? 1_555 L XYP . C1 ? ? L MAN 1 L XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale86 covale both ? L MAN . O3 ? ? ? 1_555 L AHR . C1 ? ? L MAN 1 L AHR 8 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale87 covale both ? L NAG . O3 ? ? ? 1_555 L XYP . C1 ? ? L NAG 2 L XYP 3 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale88 covale both ? L XYP . O2 ? ? ? 1_555 L XYP . C1 ? ? L XYP 3 L XYP 4 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale89 covale both ? L XYP . O4 ? ? ? 1_555 L MAN . C1 ? ? L XYP 5 L MAN 6 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale90 covale both ? L MAN . O3 ? ? ? 1_555 L XYP . C1 ? ? L MAN 6 L XYP 7 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale91 covale both ? M MAN . O2 ? ? ? 1_555 M NAG . C1 ? ? M MAN 1 M NAG 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale92 covale both ? M MAN . O4 ? ? ? 1_555 M XYP . C1 ? ? M MAN 1 M XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale93 covale both ? M MAN . O3 ? ? ? 1_555 M AHR . C1 ? ? M MAN 1 M AHR 8 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale94 covale both ? M NAG . O3 ? ? ? 1_555 M XYP . C1 ? ? M NAG 2 M XYP 3 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale95 covale both ? M XYP . O2 ? ? ? 1_555 M XYP . C1 ? ? M XYP 3 M XYP 4 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale96 covale both ? M XYP . O4 ? ? ? 1_555 M MAN . C1 ? ? M XYP 5 M MAN 6 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale97 covale both ? M MAN . O3 ? ? ? 1_555 M XYP . C1 ? ? M MAN 6 M XYP 7 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale98 covale both ? N MAN . O2 ? ? ? 1_555 N NAG . C1 ? ? N MAN 1 N NAG 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale99 covale both ? N MAN . O4 ? ? ? 1_555 N XYP . C1 ? ? N MAN 1 N XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale100 covale both ? N MAN . O3 ? ? ? 1_555 N AHR . C1 ? ? N MAN 1 N AHR 8 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale101 covale both ? N NAG . O3 ? ? ? 1_555 N XYP . C1 ? ? N NAG 2 N XYP 3 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale102 covale both ? N XYP . O2 ? ? ? 1_555 N XYP . C1 ? ? N XYP 3 N XYP 4 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale103 covale both ? N XYP . O4 ? ? ? 1_555 N MAN . C1 ? ? N XYP 5 N MAN 6 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale104 covale both ? N MAN . O3 ? ? ? 1_555 N XYP . C1 ? ? N MAN 6 N XYP 7 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale105 covale both ? O MAN . O2 ? ? ? 1_555 O NAG . C1 ? ? O MAN 1 O NAG 2 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale106 covale both ? O MAN . O4 ? ? ? 1_555 O XYP . C1 ? ? O MAN 1 O XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale107 covale both ? O MAN . O3 ? ? ? 1_555 O AHR . C1 ? ? O MAN 1 O AHR 8 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale108 covale both ? O NAG . O3 ? ? ? 1_555 O XYP . C1 ? ? O NAG 2 O XYP 3 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale109 covale both ? O XYP . O2 ? ? ? 1_555 O XYP . C1 ? ? O XYP 3 O XYP 4 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale110 covale both ? O XYP . O4 ? ? ? 1_555 O MAN . C1 ? ? O XYP 5 O MAN 6 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale111 covale both ? O MAN . O3 ? ? ? 1_555 O XYP . C1 ? ? O MAN 6 O XYP 7 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale112 covale both ? P MAN . O2 ? ? ? 1_555 P NAG . C1 ? ? P MAN 1 P NAG 2 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale113 covale both ? P MAN . O4 ? ? ? 1_555 P XYP . C1 ? ? P MAN 1 P XYP 5 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale114 covale both ? P MAN . O3 ? ? ? 1_555 P AHR . C1 ? ? P MAN 1 P AHR 8 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale115 covale both ? P NAG . O3 ? ? ? 1_555 P XYP . C1 ? ? P NAG 2 P XYP 3 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale116 covale both ? P XYP . O2 ? ? ? 1_555 P XYP . C1 ? ? P XYP 3 P XYP 4 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale117 covale both ? P XYP . O4 ? ? ? 1_555 P MAN . C1 ? ? P XYP 5 P MAN 6 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale118 covale both ? P MAN . O3 ? ? ? 1_555 P XYP . C1 ? ? P MAN 6 P XYP 7 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale119 covale both ? Q MAN . O2 ? ? ? 1_555 Q NAG . C1 ? ? Q MAN 1 Q NAG 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale120 covale both ? Q MAN . O4 ? ? ? 1_555 Q XYP . C1 ? ? Q MAN 1 Q XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale121 covale both ? Q MAN . O3 ? ? ? 1_555 Q AHR . C1 ? ? Q MAN 1 Q AHR 8 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale122 covale both ? Q NAG . O3 ? ? ? 1_555 Q XYP . C1 ? ? Q NAG 2 Q XYP 3 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale123 covale both ? Q XYP . O2 ? ? ? 1_555 Q XYP . C1 ? ? Q XYP 3 Q XYP 4 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale124 covale both ? Q XYP . O4 ? ? ? 1_555 Q MAN . C1 ? ? Q XYP 5 Q MAN 6 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale125 covale both ? Q MAN . O3 ? ? ? 1_555 Q XYP . C1 ? ? Q MAN 6 Q XYP 7 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale126 covale both ? R MAN . O2 ? ? ? 1_555 R NAG . C1 ? ? R MAN 1 R NAG 2 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale127 covale both ? R MAN . O4 ? ? ? 1_555 R XYP . C1 ? ? R MAN 1 R XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale128 covale both ? R MAN . O3 ? ? ? 1_555 R AHR . C1 ? ? R MAN 1 R AHR 8 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale129 covale both ? R NAG . O3 ? ? ? 1_555 R XYP . C1 ? ? R NAG 2 R XYP 3 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale130 covale both ? R XYP . O2 ? ? ? 1_555 R XYP . C1 ? ? R XYP 3 R XYP 4 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale131 covale both ? R XYP . O4 ? ? ? 1_555 R MAN . C1 ? ? R XYP 5 R MAN 6 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale132 covale both ? R MAN . O3 ? ? ? 1_555 R XYP . C1 ? ? R MAN 6 R XYP 7 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale133 covale both ? S MAN . O2 ? ? ? 1_555 S NAG . C1 ? ? S MAN 1 S NAG 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale134 covale both ? S MAN . O4 ? ? ? 1_555 S XYP . C1 ? ? S MAN 1 S XYP 5 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale135 covale both ? S MAN . O3 ? ? ? 1_555 S AHR . C1 ? ? S MAN 1 S AHR 8 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale136 covale both ? S NAG . O3 ? ? ? 1_555 S XYP . C1 ? ? S NAG 2 S XYP 3 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale137 covale both ? S XYP . O2 ? ? ? 1_555 S XYP . C1 ? ? S XYP 3 S XYP 4 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale138 covale both ? S XYP . O4 ? ? ? 1_555 S MAN . C1 ? ? S XYP 5 S MAN 6 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale139 covale both ? S MAN . O3 ? ? ? 1_555 S XYP . C1 ? ? S MAN 6 S XYP 7 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale140 covale both ? T MAN . O2 ? ? ? 1_555 T NAG . C1 ? ? T MAN 1 T NAG 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale141 covale both ? T MAN . O4 ? ? ? 1_555 T XYP . C1 ? ? T MAN 1 T XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale142 covale both ? T MAN . O3 ? ? ? 1_555 T AHR . C1 ? ? T MAN 1 T AHR 8 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale143 covale both ? T NAG . O3 ? ? ? 1_555 T XYP . C1 ? ? T NAG 2 T XYP 3 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale144 covale both ? T XYP . O2 ? ? ? 1_555 T XYP . C1 ? ? T XYP 3 T XYP 4 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale145 covale both ? T XYP . O4 ? ? ? 1_555 T MAN . C1 ? ? T XYP 5 T MAN 6 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale146 covale both ? T MAN . O3 ? ? ? 1_555 T XYP . C1 ? ? T MAN 6 T XYP 7 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale147 covale both ? U MAN . O2 ? ? ? 1_555 U NAG . C1 ? ? U MAN 1 U NAG 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale148 covale both ? U MAN . O4 ? ? ? 1_555 U XYP . C1 ? ? U MAN 1 U XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale149 covale both ? U MAN . O3 ? ? ? 1_555 U AHR . C1 ? ? U MAN 1 U AHR 8 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale150 covale both ? U NAG . O3 ? ? ? 1_555 U XYP . C1 ? ? U NAG 2 U XYP 3 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale151 covale both ? U XYP . O2 ? ? ? 1_555 U XYP . C1 ? ? U XYP 3 U XYP 4 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale152 covale both ? U XYP . O4 ? ? ? 1_555 U MAN . C1 ? ? U XYP 5 U MAN 6 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale153 covale both ? U MAN . O3 ? ? ? 1_555 U XYP . C1 ? ? U MAN 6 U XYP 7 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale154 covale both ? V MAN . O2 ? ? ? 1_555 V NAG . C1 ? ? V MAN 1 V NAG 2 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale155 covale both ? V MAN . O4 ? ? ? 1_555 V XYP . C1 ? ? V MAN 1 V XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale156 covale both ? V MAN . O3 ? ? ? 1_555 V AHR . C1 ? ? V MAN 1 V AHR 8 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale157 covale both ? V NAG . O3 ? ? ? 1_555 V XYP . C1 ? ? V NAG 2 V XYP 3 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale158 covale both ? V XYP . O2 ? ? ? 1_555 V XYP . C1 ? ? V XYP 3 V XYP 4 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale159 covale both ? V XYP . O4 ? ? ? 1_555 V MAN . C1 ? ? V XYP 5 V MAN 6 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale160 covale both ? V MAN . O3 ? ? ? 1_555 V XYP . C1 ? ? V MAN 6 V XYP 7 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale161 covale both ? W MAN . O2 ? ? ? 1_555 W NAG . C1 ? ? W MAN 1 W NAG 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale162 covale both ? W MAN . O4 ? ? ? 1_555 W XYP . C1 ? ? W MAN 1 W XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale163 covale both ? W MAN . O3 ? ? ? 1_555 W AHR . C1 ? ? W MAN 1 W AHR 8 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale164 covale both ? W NAG . O3 ? ? ? 1_555 W XYP . C1 ? ? W NAG 2 W XYP 3 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale165 covale both ? W XYP . O2 ? ? ? 1_555 W XYP . C1 ? ? W XYP 3 W XYP 4 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale166 covale both ? W XYP . O4 ? ? ? 1_555 W MAN . C1 ? ? W XYP 5 W MAN 6 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale167 covale both ? W MAN . O3 ? ? ? 1_555 W XYP . C1 ? ? W MAN 6 W XYP 7 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale168 covale both ? X MAN . O2 ? ? ? 1_555 X NAG . C1 ? ? X MAN 1 X NAG 2 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale169 covale both ? X MAN . O4 ? ? ? 1_555 X XYP . C1 ? ? X MAN 1 X XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale170 covale both ? X MAN . O3 ? ? ? 1_555 X AHR . C1 ? ? X MAN 1 X AHR 8 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale171 covale both ? X NAG . O3 ? ? ? 1_555 X XYP . C1 ? ? X NAG 2 X XYP 3 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale172 covale both ? X XYP . O2 ? ? ? 1_555 X XYP . C1 ? ? X XYP 3 X XYP 4 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale173 covale both ? X XYP . O4 ? ? ? 1_555 X MAN . C1 ? ? X XYP 5 X MAN 6 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale174 covale both ? X MAN . O3 ? ? ? 1_555 X XYP . C1 ? ? X MAN 6 X XYP 7 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale175 covale both ? Y MAN . O2 ? ? ? 1_555 Y NAG . C1 ? ? Y MAN 1 Y NAG 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale176 covale both ? Y MAN . O4 ? ? ? 1_555 Y XYP . C1 ? ? Y MAN 1 Y XYP 5 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale177 covale both ? Y MAN . O3 ? ? ? 1_555 Y AHR . C1 ? ? Y MAN 1 Y AHR 8 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale178 covale both ? Y NAG . O3 ? ? ? 1_555 Y XYP . C1 ? ? Y NAG 2 Y XYP 3 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale179 covale both ? Y XYP . O2 ? ? ? 1_555 Y XYP . C1 ? ? Y XYP 3 Y XYP 4 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale180 covale both ? Y XYP . O4 ? ? ? 1_555 Y MAN . C1 ? ? Y XYP 5 Y MAN 6 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale181 covale both ? Y MAN . O3 ? ? ? 1_555 Y XYP . C1 ? ? Y MAN 6 Y XYP 7 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale182 covale both ? Z MAN . O2 ? ? ? 1_555 Z NAG . C1 ? ? Z MAN 1 Z NAG 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale183 covale both ? Z MAN . O4 ? ? ? 1_555 Z XYP . C1 ? ? Z MAN 1 Z XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale184 covale both ? Z MAN . O3 ? ? ? 1_555 Z AHR . C1 ? ? Z MAN 1 Z AHR 8 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale185 covale both ? Z NAG . O3 ? ? ? 1_555 Z XYP . C1 ? ? Z NAG 2 Z XYP 3 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale186 covale both ? Z XYP . O2 ? ? ? 1_555 Z XYP . C1 ? ? Z XYP 3 Z XYP 4 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale187 covale both ? Z XYP . O4 ? ? ? 1_555 Z MAN . C1 ? ? Z XYP 5 Z MAN 6 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale188 covale both ? Z MAN . O3 ? ? ? 1_555 Z XYP . C1 ? ? Z MAN 6 Z XYP 7 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale189 covale both ? AA MAN . O2 ? ? ? 1_555 AA NAG . C1 ? ? a MAN 1 a NAG 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale190 covale both ? AA MAN . O4 ? ? ? 1_555 AA XYP . C1 ? ? a MAN 1 a XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale191 covale both ? AA MAN . O3 ? ? ? 1_555 AA AHR . C1 ? ? a MAN 1 a AHR 8 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale192 covale both ? AA NAG . O3 ? ? ? 1_555 AA XYP . C1 ? ? a NAG 2 a XYP 3 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale193 covale both ? AA XYP . O2 ? ? ? 1_555 AA XYP . C1 ? ? a XYP 3 a XYP 4 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale194 covale both ? AA XYP . O4 ? ? ? 1_555 AA MAN . C1 ? ? a XYP 5 a MAN 6 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale195 covale both ? AA MAN . O3 ? ? ? 1_555 AA XYP . C1 ? ? a MAN 6 a XYP 7 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale196 covale both ? BA MAN . O2 ? ? ? 1_555 BA NAG . C1 ? ? b MAN 1 b NAG 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale197 covale both ? BA MAN . O4 ? ? ? 1_555 BA XYP . C1 ? ? b MAN 1 b XYP 5 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale198 covale both ? BA MAN . O3 ? ? ? 1_555 BA AHR . C1 ? ? b MAN 1 b AHR 8 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale199 covale both ? BA NAG . O3 ? ? ? 1_555 BA XYP . C1 ? ? b NAG 2 b XYP 3 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale200 covale both ? BA XYP . O2 ? ? ? 1_555 BA XYP . C1 ? ? b XYP 3 b XYP 4 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale201 covale both ? BA XYP . O4 ? ? ? 1_555 BA MAN . C1 ? ? b XYP 5 b MAN 6 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale202 covale both ? BA MAN . O3 ? ? ? 1_555 BA XYP . C1 ? ? b MAN 6 b XYP 7 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale203 covale both ? CA MAN . O2 ? ? ? 1_555 CA NAG . C1 ? ? c MAN 1 c NAG 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale204 covale both ? CA MAN . O4 ? ? ? 1_555 CA XYP . C1 ? ? c MAN 1 c XYP 5 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale205 covale both ? CA MAN . O3 ? ? ? 1_555 CA AHR . C1 ? ? c MAN 1 c AHR 8 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale206 covale both ? CA NAG . O3 ? ? ? 1_555 CA XYP . C1 ? ? c NAG 2 c XYP 3 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale207 covale both ? CA XYP . O2 ? ? ? 1_555 CA XYP . C1 ? ? c XYP 3 c XYP 4 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale208 covale both ? CA XYP . O4 ? ? ? 1_555 CA MAN . C1 ? ? c XYP 5 c MAN 6 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale209 covale both ? CA MAN . O3 ? ? ? 1_555 CA XYP . C1 ? ? c MAN 6 c XYP 7 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale210 covale both ? DA MAN . O2 ? ? ? 1_555 DA NAG . C1 ? ? d MAN 1 d NAG 2 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale211 covale both ? DA MAN . O4 ? ? ? 1_555 DA XYP . C1 ? ? d MAN 1 d XYP 5 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale212 covale both ? DA MAN . O3 ? ? ? 1_555 DA AHR . C1 ? ? d MAN 1 d AHR 8 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale213 covale both ? DA NAG . O3 ? ? ? 1_555 DA XYP . C1 ? ? d NAG 2 d XYP 3 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale214 covale both ? DA XYP . O2 ? ? ? 1_555 DA XYP . C1 ? ? d XYP 3 d XYP 4 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale215 covale both ? DA XYP . O4 ? ? ? 1_555 DA MAN . C1 ? ? d XYP 5 d MAN 6 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale216 covale both ? DA MAN . O3 ? ? ? 1_555 DA XYP . C1 ? ? d MAN 6 d XYP 7 1_555 ? ? ? ? ? ? ? 1.430 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MAN AA . ? SER C 18 ? MAN a 1 ? 1_555 SER C 18 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 2 MAN BA . ? SER C 21 ? MAN b 1 ? 1_555 SER C 21 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 3 MAN CA . ? SER C 24 ? MAN c 1 ? 1_555 SER C 24 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 4 MAN D . ? SER A 3 ? MAN D 1 ? 1_555 SER A 3 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 5 MAN DA . ? SER C 27 ? MAN d 1 ? 1_555 SER C 27 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 6 MAN E . ? SER A 6 ? MAN E 1 ? 1_555 SER A 6 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 7 MAN F . ? SER A 9 ? MAN F 1 ? 1_555 SER A 9 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 8 MAN G . ? SER A 12 ? MAN G 1 ? 1_555 SER A 12 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 9 MAN H . ? SER A 15 ? MAN H 1 ? 1_555 SER A 15 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 10 MAN I . ? SER A 18 ? MAN I 1 ? 1_555 SER A 18 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 11 MAN J . ? SER A 21 ? MAN J 1 ? 1_555 SER A 21 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 12 MAN K . ? SER A 24 ? MAN K 1 ? 1_555 SER A 24 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 13 MAN L . ? SER A 27 ? MAN L 1 ? 1_555 SER A 27 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 14 MAN M . ? SER B 3 ? MAN M 1 ? 1_555 SER B 3 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 15 MAN N . ? SER B 6 ? MAN N 1 ? 1_555 SER B 6 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 16 MAN O . ? SER B 9 ? MAN O 1 ? 1_555 SER B 9 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 17 MAN P . ? SER B 12 ? MAN P 1 ? 1_555 SER B 12 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 18 MAN Q . ? SER B 15 ? MAN Q 1 ? 1_555 SER B 15 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 19 MAN R . ? SER B 18 ? MAN R 1 ? 1_555 SER B 18 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 20 MAN S . ? SER B 21 ? MAN S 1 ? 1_555 SER B 21 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 21 MAN T . ? SER B 24 ? MAN T 1 ? 1_555 SER B 24 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 22 MAN U . ? SER B 27 ? MAN U 1 ? 1_555 SER B 27 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 23 MAN V . ? SER C 3 ? MAN V 1 ? 1_555 SER C 3 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 24 MAN W . ? SER C 6 ? MAN W 1 ? 1_555 SER C 6 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 25 MAN X . ? SER C 9 ? MAN X 1 ? 1_555 SER C 9 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 26 MAN Y . ? SER C 12 ? MAN Y 1 ? 1_555 SER C 12 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate 27 MAN Z . ? SER C 15 ? MAN Z 1 ? 1_555 SER C 15 ? 1_555 C1 OG SER 1 MAN O-Glycosylation Carbohydrate # _pdbx_entry_details.entry_id 21NT _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 3 ? ? -76.23 -167.98 2 1 SER A 18 ? ? 61.29 66.65 3 1 SER A 21 ? ? 60.64 67.18 4 1 SER A 24 ? ? 60.53 65.45 5 1 SER B 3 ? ? -75.53 -167.93 6 1 SER B 15 ? ? 60.59 67.04 7 1 SER B 18 ? ? 60.56 67.19 8 1 SER B 21 ? ? 60.87 66.76 9 1 SER B 24 ? ? 60.63 66.33 10 1 SER C 3 ? ? -78.64 -166.08 11 1 SER C 15 ? ? 61.72 66.66 12 1 SER C 18 ? ? 61.17 66.48 13 1 SER C 21 ? ? 60.96 66.56 14 1 SER C 24 ? ? 60.67 65.14 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 21NT _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 21NT _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.5 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 28629 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name TLP-3 _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 21NT _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1300 _em_imaging.nominal_defocus_max 1800 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 21NT _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 21NT _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AHR O5 O N N 1 AHR C5 C N N 2 AHR C4 C N S 3 AHR O4 O N N 4 AHR C3 C N R 5 AHR O3 O N N 6 AHR C2 C N R 7 AHR O2 O N N 8 AHR C1 C N R 9 AHR O1 O N N 10 AHR HO5 H N N 11 AHR H51 H N N 12 AHR H52 H N N 13 AHR H4 H N N 14 AHR H3 H N N 15 AHR HO3 H N N 16 AHR H2 H N N 17 AHR HO2 H N N 18 AHR H1 H N N 19 AHR HO1 H N N 20 GLY N N N N 21 GLY CA C N N 22 GLY C C N N 23 GLY O O N N 24 GLY OXT O N N 25 GLY H H N N 26 GLY H2 H N N 27 GLY HA2 H N N 28 GLY HA3 H N N 29 GLY HXT H N N 30 MAN C1 C N S 31 MAN C2 C N S 32 MAN C3 C N S 33 MAN C4 C N S 34 MAN C5 C N R 35 MAN C6 C N N 36 MAN O1 O N N 37 MAN O2 O N N 38 MAN O3 O N N 39 MAN O4 O N N 40 MAN O5 O N N 41 MAN O6 O N N 42 MAN H1 H N N 43 MAN H2 H N N 44 MAN H3 H N N 45 MAN H4 H N N 46 MAN H5 H N N 47 MAN H61 H N N 48 MAN H62 H N N 49 MAN HO1 H N N 50 MAN HO2 H N N 51 MAN HO3 H N N 52 MAN HO4 H N N 53 MAN HO6 H N N 54 NAG C1 C N R 55 NAG C2 C N R 56 NAG C3 C N R 57 NAG C4 C N S 58 NAG C5 C N R 59 NAG C6 C N N 60 NAG C7 C N N 61 NAG C8 C N N 62 NAG N2 N N N 63 NAG O1 O N N 64 NAG O3 O N N 65 NAG O4 O N N 66 NAG O5 O N N 67 NAG O6 O N N 68 NAG O7 O N N 69 NAG H1 H N N 70 NAG H2 H N N 71 NAG H3 H N N 72 NAG H4 H N N 73 NAG H5 H N N 74 NAG H61 H N N 75 NAG H62 H N N 76 NAG H81 H N N 77 NAG H82 H N N 78 NAG H83 H N N 79 NAG HN2 H N N 80 NAG HO1 H N N 81 NAG HO3 H N N 82 NAG HO4 H N N 83 NAG HO6 H N N 84 SER N N N N 85 SER CA C N S 86 SER C C N N 87 SER O O N N 88 SER CB C N N 89 SER OG O N N 90 SER OXT O N N 91 SER H H N N 92 SER H2 H N N 93 SER HA H N N 94 SER HB2 H N N 95 SER HB3 H N N 96 SER HG H N N 97 SER HXT H N N 98 XYP O1 O N N 99 XYP C1 C N R 100 XYP C2 C N R 101 XYP C3 C N S 102 XYP C4 C N R 103 XYP C5 C N N 104 XYP O2 O N N 105 XYP O3 O N N 106 XYP O4 O N N 107 XYP O5 O N N 108 XYP HO1 H N N 109 XYP H1 H N N 110 XYP H2 H N N 111 XYP H3 H N N 112 XYP H4 H N N 113 XYP H51 H N N 114 XYP H52 H N N 115 XYP HO2 H N N 116 XYP HO3 H N N 117 XYP HO4 H N N 118 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AHR O5 C5 sing N N 1 AHR O5 HO5 sing N N 2 AHR C5 C4 sing N N 3 AHR C5 H51 sing N N 4 AHR C5 H52 sing N N 5 AHR C4 O4 sing N N 6 AHR C4 C3 sing N N 7 AHR C4 H4 sing N N 8 AHR O4 C1 sing N N 9 AHR C3 O3 sing N N 10 AHR C3 C2 sing N N 11 AHR C3 H3 sing N N 12 AHR O3 HO3 sing N N 13 AHR C2 O2 sing N N 14 AHR C2 C1 sing N N 15 AHR C2 H2 sing N N 16 AHR O2 HO2 sing N N 17 AHR C1 O1 sing N N 18 AHR C1 H1 sing N N 19 AHR O1 HO1 sing N N 20 GLY N CA sing N N 21 GLY N H sing N N 22 GLY N H2 sing N N 23 GLY CA C sing N N 24 GLY CA HA2 sing N N 25 GLY CA HA3 sing N N 26 GLY C O doub N N 27 GLY C OXT sing N N 28 GLY OXT HXT sing N N 29 MAN C1 C2 sing N N 30 MAN C1 O1 sing N N 31 MAN C1 O5 sing N N 32 MAN C1 H1 sing N N 33 MAN C2 C3 sing N N 34 MAN C2 O2 sing N N 35 MAN C2 H2 sing N N 36 MAN C3 C4 sing N N 37 MAN C3 O3 sing N N 38 MAN C3 H3 sing N N 39 MAN C4 C5 sing N N 40 MAN C4 O4 sing N N 41 MAN C4 H4 sing N N 42 MAN C5 C6 sing N N 43 MAN C5 O5 sing N N 44 MAN C5 H5 sing N N 45 MAN C6 O6 sing N N 46 MAN C6 H61 sing N N 47 MAN C6 H62 sing N N 48 MAN O1 HO1 sing N N 49 MAN O2 HO2 sing N N 50 MAN O3 HO3 sing N N 51 MAN O4 HO4 sing N N 52 MAN O6 HO6 sing N N 53 NAG C1 C2 sing N N 54 NAG C1 O1 sing N N 55 NAG C1 O5 sing N N 56 NAG C1 H1 sing N N 57 NAG C2 C3 sing N N 58 NAG C2 N2 sing N N 59 NAG C2 H2 sing N N 60 NAG C3 C4 sing N N 61 NAG C3 O3 sing N N 62 NAG C3 H3 sing N N 63 NAG C4 C5 sing N N 64 NAG C4 O4 sing N N 65 NAG C4 H4 sing N N 66 NAG C5 C6 sing N N 67 NAG C5 O5 sing N N 68 NAG C5 H5 sing N N 69 NAG C6 O6 sing N N 70 NAG C6 H61 sing N N 71 NAG C6 H62 sing N N 72 NAG C7 C8 sing N N 73 NAG C7 N2 sing N N 74 NAG C7 O7 doub N N 75 NAG C8 H81 sing N N 76 NAG C8 H82 sing N N 77 NAG C8 H83 sing N N 78 NAG N2 HN2 sing N N 79 NAG O1 HO1 sing N N 80 NAG O3 HO3 sing N N 81 NAG O4 HO4 sing N N 82 NAG O6 HO6 sing N N 83 SER N CA sing N N 84 SER N H sing N N 85 SER N H2 sing N N 86 SER CA C sing N N 87 SER CA CB sing N N 88 SER CA HA sing N N 89 SER C O doub N N 90 SER C OXT sing N N 91 SER CB OG sing N N 92 SER CB HB2 sing N N 93 SER CB HB3 sing N N 94 SER OG HG sing N N 95 SER OXT HXT sing N N 96 XYP O1 C1 sing N N 97 XYP O1 HO1 sing N N 98 XYP C1 C2 sing N N 99 XYP C1 O5 sing N N 100 XYP C1 H1 sing N N 101 XYP C2 C3 sing N N 102 XYP C2 O2 sing N N 103 XYP C2 H2 sing N N 104 XYP C3 C4 sing N N 105 XYP C3 O3 sing N N 106 XYP C3 H3 sing N N 107 XYP C4 C5 sing N N 108 XYP C4 O4 sing N N 109 XYP C4 H4 sing N N 110 XYP C5 O5 sing N N 111 XYP C5 H51 sing N N 112 XYP C5 H52 sing N N 113 XYP O2 HO2 sing N N 114 XYP O3 HO3 sing N N 115 XYP O4 HO4 sing N N 116 # _em_admin.current_status REL _em_admin.deposition_date 2025-12-21 _em_admin.deposition_site PDBJ _em_admin.entry_id 21NT _em_admin.last_update 2026-06-24 _em_admin.map_release_date 2026-06-24 _em_admin.title 'Cryo-EM structure of TLP-3' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 1300146 _em_entity_assembly_naturalsource.organism 'algae metagenome' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C3 _em_helical_entity.angular_rotation_per_subunit 105.6 _em_helical_entity.axial_rise_per_subunit 2.9 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 92478205 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 MAN 1 n 2 NAG 2 n 2 XYP 3 n 2 XYP 4 n 2 XYP 5 n 2 MAN 6 n 2 XYP 7 n 2 AHR 8 n # _atom_sites.entry_id 21NT _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ #