HEADER VIRAL PROTEIN 31-DEC-25 21WL TITLE CRYO-EM STRUCTURE OF THE TAIL SHEATH FROM THE CONTRACTED PHI92 TITLE 2 BACTERIOPHAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHI92_GP130; COMPND 3 CHAIN: G SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE PHI92; SOURCE 3 ORGANISM_TAXID: 948870 KEYWDS CONTRACTED SHEATH, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR Y.CHEN,H.R.LIU REVDAT 1 22-JUL-26 21WL 0 JRNL AUTH Y.CHEN,H.R.LIU JRNL TITL CRYO-EM STRUCTURE OF THE TAIL SHEATH FROM THE CONTRACTED JRNL TITL 2 PHI92 BACTERIOPHAGE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.700 REMARK 3 NUMBER OF PARTICLES : 4500 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 21WL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 08-JAN-26. REMARK 100 THE DEPOSITION ID IS D_1300067988. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ESCHERICHIA PHAGE PHI92 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3200.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET G 1 REMARK 465 ALA G 2 REMARK 465 THR G 455 REMARK 465 ALA G 456 REMARK 465 ASN G 457 REMARK 465 SER G 458 REMARK 465 GLN G 459 REMARK 465 ASN G 460 REMARK 465 SER G 461 REMARK 465 ASN G 462 REMARK 465 SER G 463 REMARK 465 SER G 464 REMARK 465 THR G 465 REMARK 465 VAL G 466 REMARK 465 SER G 467 REMARK 465 SER G 468 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR G 37 -112.97 39.72 REMARK 500 LEU G 40 -123.54 58.23 REMARK 500 SER G 46 156.02 68.88 REMARK 500 ALA G 106 -60.52 -102.81 REMARK 500 ASN G 135 10.05 -153.18 REMARK 500 SER G 168 -61.17 -92.41 REMARK 500 MET G 245 61.92 39.63 REMARK 500 THR G 276 67.61 -118.38 REMARK 500 PRO G 277 71.39 20.43 REMARK 500 GLU G 314 -131.26 64.86 REMARK 500 ASP G 322 154.81 69.68 REMARK 500 LEU G 358 -75.58 -64.31 REMARK 500 SER G 366 -23.91 -140.40 REMARK 500 LEU G 371 -73.24 -49.80 REMARK 500 ILE G 390 148.35 72.10 REMARK 500 THR G 419 -147.65 44.90 REMARK 500 ASP G 429 -130.72 59.96 REMARK 500 HIS G 442 -66.21 -120.29 REMARK 500 ASN G 453 127.94 -173.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-68052 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE TAIL SHEATH FROM THE CONTRACTED PHI92 REMARK 900 BACTERIOPHAGE DBREF 21WL G 1 468 UNP I7I022 I7I022_9CAUD 1 468 SEQRES 1 G 468 MET ALA THR PHE ARG ASP LYS VAL VAL SER VAL THR LEU SEQRES 2 G 468 THR TYR GLY ALA THR SER ILE SER GLU THR GLN PHE ASP SEQRES 3 G 468 ILE PRO LEU ILE LEU THR GLY HIS ASN VAL THR GLY ASN SEQRES 4 G 468 LEU VAL ASP TYR PHE THR SER SER ASP ALA LEU LEU GLN SEQRES 5 G 468 ALA GLY PHE GLY THR ALA ASP PRO ALA TYR LYS MET ALA SEQRES 6 G 468 LYS LEU LEU PHE ASP GLY LEU PHE ALA PRO GLU GLN VAL SEQRES 7 G 468 ILE VAL GLY LYS ARG ASP VAL SER LYS THR THR LEU THR SEQRES 8 G 468 PRO VAL VAL GLU ASP SER ALA THR TYR VAL ILE THR ILE SEQRES 9 G 468 LYS ALA ASN SER LYS SER LYS ASP PHE LYS PHE VAL ALA SEQRES 10 G 468 ASP ASP THR ALA THR ALA GLN GLU ILE VAL VAL GLY LEU SEQRES 11 G 468 THR GLU MET ILE ASN ALA ASP VAL VAL TYR LYS GLU PHE SEQRES 12 G 468 PHE THR VAL SER ASN ASP GLY SER VAL ILE THR VAL THR SEQRES 13 G 468 PRO VAL ALA GLY LYS TYR ALA THR MET ASP SER SER GLY SEQRES 14 G 468 PHE THR THR LYS VAL GLU TYR ALA ASN ASP ILE LEU GLU SEQRES 15 G 468 ASP ILE ALA LYS ILE ALA ASP TYR GLU ASN SER TRP PHE SEQRES 16 G 468 TRP LEU LEU SER ASP SER HIS ALA GLU GLN ASP ILE ILE SEQRES 17 G 468 ASP LEU ALA GLY TYR VAL GLU GLU HIS ASP LYS VAL TYR SEQRES 18 G 468 PHE PHE SER THR SER GLN PRO GLY VAL LEU THR LYS GLU SEQRES 19 G 468 GLU ASP ASN ILE LEU GLU ARG LEU GLY ASP MET GLY TYR SEQRES 20 G 468 ASN ASN THR CYS MET ALA LEU TRP MET THR ASN ALA ASP SEQRES 21 G 468 THR VAL PHE PRO GLU ALA ALA VAL VAL GLY SER ILE CYS SEQRES 22 G 468 SER ALA THR PRO GLY THR THR THR LEU HIS GLY LYS THR SEQRES 23 G 468 LEU VAL GLY ILE GLU ILE GLU LYS LEU GLY GLN THR ALA SEQRES 24 G 468 GLU ASN PHE ILE VAL GLN GLN ASN GLY ASN ILE TYR ARG SEQRES 25 G 468 LYS GLU HIS GLY VAL LEU PHE TYR ARG ASP GLY PHE MET SEQRES 26 G 468 VAL SER GLY PHE TYR VAL ASP TYR VAL VAL HIS ALA LEU SEQRES 27 G 468 TRP PHE LYS ALA ARG VAL GLU GLU SER LEU PHE ALA LEU SEQRES 28 G 468 PHE LYS GLN GLN SER MET LEU GLY SER GLY VAL ARG ALA SEQRES 29 G 468 THR SER ALA GLY LEU ALA LEU ILE ARG GLN ALA VAL THR SEQRES 30 G 468 ALA ASN PRO ILE GLN VAL GLY ILE ASN ASN GLY SER ILE SEQRES 31 G 468 ALA ASN GLU VAL VAL THR SER GLU GLU THR GLY LEU LEU SEQRES 32 G 468 VAL SER LEU LYS PRO THR ILE TYR ILE PRO SER ARG ALA SEQRES 33 G 468 ASP MET THR ASP ALA GLN ILE ASN ALA ARG LEU VAL ASP SEQRES 34 G 468 GLY MET VAL ILE GLU TYR VAL TYR ALA GLY PHE PHE HIS SEQRES 35 G 468 TYR VAL LYS VAL GLN VAL ASN VAL LEU THR ASN ARG THR SEQRES 36 G 468 ALA ASN SER GLN ASN SER ASN SER SER THR VAL SER SER HELIX 1 AA1 SER G 47 GLY G 54 1 8 HELIX 2 AA2 ASP G 59 ASP G 70 1 12 HELIX 3 AA3 THR G 122 ILE G 134 1 13 HELIX 4 AA4 VAL G 139 PHE G 143 1 5 HELIX 5 AA5 ASP G 179 GLU G 191 1 13 HELIX 6 AA6 ALA G 203 HIS G 217 1 15 HELIX 7 AA7 GLN G 227 LEU G 231 5 5 HELIX 8 AA8 ASN G 237 ASP G 244 1 8 HELIX 9 AA9 ASN G 258 PHE G 263 1 6 HELIX 10 AB1 PRO G 264 CYS G 273 1 10 HELIX 11 AB2 GLY G 296 GLN G 306 1 11 HELIX 12 AB3 TYR G 330 GLY G 359 1 30 HELIX 13 AB4 SER G 366 GLY G 388 1 23 HELIX 14 AB5 ASP G 420 ARG G 426 1 7 SHEET 1 AA1 6 ASP G 42 PHE G 44 0 SHEET 2 AA1 6 VAL G 78 GLY G 81 -1 O VAL G 80 N ASP G 42 SHEET 3 AA1 6 PRO G 28 LEU G 31 1 N ILE G 30 O GLY G 81 SHEET 4 AA1 6 TRP G 196 LEU G 198 1 O LEU G 198 N LEU G 31 SHEET 5 AA1 6 VAL G 220 PHE G 223 1 O VAL G 220 N LEU G 197 SHEET 6 AA1 6 THR G 250 MET G 252 1 O CYS G 251 N TYR G 221 SHEET 1 AA2 4 PHE G 144 ASP G 149 0 SHEET 2 AA2 4 VAL G 152 PRO G 157 -1 O VAL G 152 N ASP G 149 SHEET 3 AA2 4 VAL G 85 THR G 91 -1 N THR G 88 O VAL G 155 SHEET 4 AA2 4 THR G 171 TYR G 176 -1 O GLU G 175 N SER G 86 SHEET 1 AA3 3 SER G 110 VAL G 116 0 SHEET 2 AA3 3 THR G 99 LYS G 105 -1 N TYR G 100 O PHE G 115 SHEET 3 AA3 3 THR G 164 SER G 167 -1 O ASP G 166 N THR G 103 SHEET 1 AA4 2 ILE G 310 ARG G 312 0 SHEET 2 AA4 2 PHE G 319 ARG G 321 -1 O PHE G 319 N ARG G 312 SHEET 1 AA5 2 GLU G 393 THR G 396 0 SHEET 2 AA5 2 LEU G 403 LEU G 406 -1 O LEU G 406 N GLU G 393 SHEET 1 AA6 2 THR G 409 TYR G 411 0 SHEET 2 AA6 2 VAL G 432 GLU G 434 -1 O GLU G 434 N THR G 409 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 156 0 0 14 19 0 0 6 3491 1 0 36 END