data_21ZT # _entry.id 21ZT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.414 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 21ZT pdb_000021zt 10.2210/pdb21zt/pdb WWPDB D_1300065593 ? ? EMDB EMD-68122 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-06-24 ? 2 'EM metadata' 1 0 2026-06-24 ? 3 'Half map' 1 0 2026-06-24 1 4 'Half map' 1 0 2026-06-24 2 5 Image 1 0 2026-06-24 ? 6 'Primary map' 1 0 2026-06-24 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Half map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 Image repository 'Initial release' ? ? 6 6 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 21ZT _pdbx_database_status.recvd_initial_deposition_date 2026-01-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of TLP-2' _pdbx_database_related.db_id EMD-68122 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email nyan@tsinghua.edu.cn _pdbx_contact_author.name_first Nieng _pdbx_contact_author.name_last Yan _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4829-7416 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yan, N.' 1 ? 'Li, Z.' 2 ? 'Wang, T.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Chem Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2451-9456 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 33 _citation.language ? _citation.page_first 699 _citation.page_last 710.e2 _citation.title 'CryoSeek identification of glycofibrils with diverse compositions and structural assemblies.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2026.03.008 _citation.pdbx_database_id_PubMed 42013841 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, Z.' 1 ? primary 'Wang, T.' 2 ? primary 'Sun, Y.' 3 ? primary 'Xu, K.' 4 ? primary 'Huang, W.' 5 ? primary 'Zhang, Q.C.' 6 ? primary 'Yan, C.' 7 ? primary 'Hu, M.' 8 ? primary 'Yan, N.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat TLP-2 650.638 1 ? ? ? ? 2 branched syn ;alpha-L-arabinofuranose-(1-4)-alpha-D-mannopyranose-(1-2)-alpha-L-arabinofuranose-(1-2)-beta-L-arabinofuranose-(1-2)-alpha-L-arabinofuranose-(1-2)-[alpha-L-arabinofuranose-(1-2)-beta-D-xylopyranose-(1-3)-beta-D-glucopyranose-(1-3)][alpha-L-arabinofuranose-(1-6)]alpha-D-mannopyranose-(1-2)-alpha-L-arabinofuranose-(1-2)-beta-L-arabinofuranose-(1-3)-[beta-D-xylopyranose-(1-3)-beta-D-xylopyranose-(1-3)-beta-D-xylopyranose-(1-4)-[alpha-L-arabinofuranose-(1-2)]beta-D-xylopyranose-(1-4)][alpha-L-arabinofuranose-(1-2)-alpha-L-arabinofuranose-(1-2)]beta-D-xylopyranose-(1-4)-[alpha-L-arabinofuranose-(1-2)-[alpha-L-arabinofuranose-(1-4)]beta-D-xylopyranose-(1-2)-[alpha-L-arabinofuranose-(1-3)]alpha-D-glucopyranose-(1-5)-alpha-L-arabinofuranose-(1-5)-alpha-L-arabinofuranose-(1-2)-[beta-D-glucopyranose-(1-3)]alpha-L-arabinofuranose-(1-4)-[beta-L-arabinofuranose-(1-2)-alpha-L-arabinofuranose-(1-2)-[beta-D-xylopyranose-(1-3)]beta-L-arabinofuranose-(1-2)][alpha-L-arabinofuranose-(1-3)-beta-D-xylopyranose-(1-3)]beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-3)]2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose ; 5339.562 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ASASASAS _entity_poly.pdbx_seq_one_letter_code_can ASASASAS _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 SER n 1 3 ALA n 1 4 SER n 1 5 ALA n 1 6 SER n 1 7 ALA n 1 8 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 8 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'algae metagenome' _entity_src_nat.pdbx_ncbi_taxonomy_id 1300146 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 ;WURCS=2.0/7,38,37/[a2122h-1a_1-5_1*OPO/3O/3=O_2*NCC/3=O][a212h-1b_1-5][a211h-1b_1-4][a211h-1a_1-4][a2122h-1a_1-5][a2122h-1b_1-5][a1122h-1a_1-5]/1-2-2-3-4-3-2-2-4-4-4-4-5-2-4-4-4-6-2-4-4-3-4-7-4-3-4-7-4-6-2-4-4-2-4-2-2-2/a3-b1_a4-s1_b4-c1_c2-d1_c3-h1_c4-j1_d2-e1_d3-g1_e2-f1_h3-i1_j2-k1_j3-r1_k5-l1_l5-m1_m2-n1_m3-q1_n2-o1_n4-p1_s2-t1_s3-v1_s4-H1_t2-u1_v2-w1_w2-x1_x2-y1_x3-D1_x6-G1_y2-z1_z2-A1_A2-B1_B4-C1_D3-E1_E2-F1_H2-I1_H4-J1_J3-K1_K3-L1 ; WURCS PDB2Glycan 1.1.0 2 2 ;[][<O2P1>]{[(1+1)][a-D-GlcpNAc]{[(3+1)][b-D-Xylp]{[(4+1)][b-D-Xylp]{[(2+1)][b-L-Araf]{[(2+1)][a-L-Araf]{[(2+1)][b-L-Araf]{}}[(3+1)][b-D-Xylp]{}}[(3+1)][b-D-Xylp]{[(3+1)][a-L-Araf]{}}[(4+1)][a-L-Araf]{[(2+1)][a-L-Araf]{[(5+1)][a-L-Araf]{[(5+1)][a-D-Glcp]{[(2+1)][b-D-Xylp]{[(2+1)][a-L-Araf]{}[(4+1)][a-L-Araf]{}}[(3+1)][a-L-Araf]{}}}}[(3+1)][b-D-Glcp]{}}}}[(4+1)][b-D-Xylp]{[(2+1)][a-L-Araf]{[(2+1)][a-L-Araf]{}}[(3+1)][b-L-Araf]{[(2+1)][a-L-Araf]{[(2+1)][a-D-Manp]{[(2+1)][a-L-Araf]{[(2+1)][b-L-Araf]{[(2+1)][a-L-Araf]{[(2+1)][a-D-Manp]{[(4+1)][a-L-Araf]{}}}}}[(3+1)][b-D-Glcp]{[(3+1)][b-D-Xylp]{[(2+1)][a-L-Araf]{}}}[(6+1)][a-L-Araf]{}}}}[(4+1)][b-D-Xylp]{[(2+1)][a-L-Araf]{}[(4+1)][b-D-Xylp]{[(3+1)][b-D-Xylp]{[(3+1)][b-D-Xylp]{}}}}}}} ; LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 XYP C1 O1 1 GN1 O4 HO4 sing ? 2 2 3 FUB C1 O1 2 XYP O3 HO3 sing ? 3 2 4 AHR C1 O1 3 FUB O2 HO2 sing ? 4 2 5 MAN C1 O1 4 AHR O2 HO2 sing ? 5 2 6 AHR C1 O1 5 MAN O2 HO2 sing ? 6 2 7 FUB C1 O1 6 AHR O2 HO2 sing ? 7 2 8 AHR C1 O1 7 FUB O2 HO2 sing ? 8 2 9 MAN C1 O1 8 AHR O2 HO2 sing ? 9 2 10 AHR C1 O1 9 MAN O4 HO4 sing ? 10 2 11 BGC C1 O1 5 MAN O3 HO3 sing ? 11 2 12 XYP C1 O1 11 BGC O3 HO3 sing ? 12 2 13 AHR C1 O1 12 XYP O2 HO2 sing ? 13 2 14 AHR C1 O1 5 MAN O6 HO6 sing ? 14 2 15 XYP C1 O1 2 XYP O4 HO4 sing ? 15 2 16 XYP C1 O1 15 XYP O4 HO4 sing ? 16 2 17 XYP C1 O1 16 XYP O3 HO3 sing ? 17 2 18 XYP C1 O1 17 XYP O3 HO3 sing ? 18 2 19 AHR C1 O1 15 XYP O2 HO2 sing ? 19 2 20 AHR C1 O1 2 XYP O2 HO2 sing ? 20 2 21 AHR C1 O1 20 AHR O2 HO2 sing ? 21 2 22 XYP C1 O1 1 GN1 O3 HO3 sing ? 22 2 23 XYP C1 O1 22 XYP O4 HO4 sing ? 23 2 24 AHR C1 O1 23 XYP O4 HO4 sing ? 24 2 25 AHR C1 O1 24 AHR O2 HO2 sing ? 25 2 26 AHR C1 O1 25 AHR O5 HO5 sing ? 26 2 27 GLC C1 O1 26 AHR O5 HO5 sing ? 27 2 28 XYP C1 O1 27 GLC O2 HO2 sing ? 28 2 29 AHR C1 O1 28 XYP O2 HO2 sing ? 29 2 30 AHR C1 O1 28 XYP O4 HO4 sing ? 30 2 31 AHR C1 O1 27 GLC O3 HO3 sing ? 31 2 32 BGC C1 O1 24 AHR O3 HO3 sing ? 32 2 33 FUB C1 O1 23 XYP O2 HO2 sing ? 33 2 34 AHR C1 O1 33 FUB O2 HO2 sing ? 34 2 35 FUB C1 O1 34 AHR O2 HO2 sing ? 35 2 36 XYP C1 O1 33 FUB O3 HO3 sing ? 36 2 37 XYP C1 O1 23 XYP O3 HO3 sing ? 37 2 38 AHR C1 O1 37 XYP O3 HO3 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AHR 'L-saccharide, alpha linking' . alpha-L-arabinofuranose 'alpha-L-arabinose; L-arabinose; arabinose' 'C5 H10 O5' 150.130 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 FUB 'L-saccharide, beta linking' . beta-L-arabinofuranose 'beta-L-arabinose; L-arabinose; arabinose' 'C5 H10 O5' 150.130 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose 'alpha-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 GN1 D-saccharide n 2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose ;2-(ACETYLAMINO)-2-DEOXY-1-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE; N-ACETYL-D-GLUCOSAMINE-1-PHOSPHATE; N-acetyl-1-O-phosphono-alpha-D-glucosamine; 2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucose; 2-acetamido-2-deoxy-1-O-phosphono-D-glucose; 2-acetamido-2-deoxy-1-O-phosphono-glucose ; 'C8 H16 N O9 P' 301.188 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 XYP 'D-saccharide, beta linking' . beta-D-xylopyranose 'beta-D-xylose; D-xylose; xylose' 'C5 H10 O5' 150.130 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AHR 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LArafa AHR 'COMMON NAME' GMML 1.0 a-L-arabinofuranose AHR 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Araf AHR 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Ara BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc FUB 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LArafb FUB 'COMMON NAME' GMML 1.0 b-L-arabinofuranose FUB 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-L-Araf FUB 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Ara GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc GN1 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp1PO3NAc MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man XYP 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DXylpb XYP 'COMMON NAME' GMML 1.0 b-D-xylopyranose XYP 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Xylp XYP 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Xyl # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 SER 8 8 8 SER SER A . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 GN1 1 B GN1 1 A GN1 101 n B 2 XYP 2 B XYP 2 A XYP 119 n B 2 FUB 3 B FUB 3 A FUB 127 n B 2 AHR 4 B AHR 4 A AHR 128 n B 2 MAN 5 B MAN 5 A MAN 129 n B 2 AHR 6 B AHR 6 A AHR 130 n B 2 FUB 7 B FUB 7 A FUB 131 n B 2 AHR 8 B AHR 8 A AHR 132 n B 2 MAN 9 B MAN 9 A MAN 137 n B 2 AHR 10 B AHR 10 A AHR 138 n B 2 BGC 11 B BGC 11 A BGC 133 n B 2 XYP 12 B XYP 12 A XYP 135 n B 2 AHR 13 B AHR 13 A AHR 136 n B 2 AHR 14 B AHR 14 A AHR 134 n B 2 XYP 15 B XYP 15 A XYP 122 n B 2 XYP 16 B XYP 16 A XYP 124 n B 2 XYP 17 B XYP 17 A XYP 125 n B 2 XYP 18 B XYP 18 A XYP 126 n B 2 AHR 19 B AHR 19 A AHR 123 n B 2 AHR 20 B AHR 20 A AHR 120 n B 2 AHR 21 B AHR 21 A AHR 121 n B 2 XYP 22 B XYP 22 A XYP 102 n B 2 XYP 23 B XYP 23 A XYP 103 n B 2 AHR 24 B AHR 24 A AHR 110 n B 2 AHR 25 B AHR 25 A AHR 112 n B 2 AHR 26 B AHR 26 A AHR 113 n B 2 GLC 27 B GLC 27 A GLC 114 n B 2 XYP 28 B XYP 28 A XYP 116 n B 2 AHR 29 B AHR 29 A AHR 117 n B 2 AHR 30 B AHR 30 A AHR 118 n B 2 AHR 31 B AHR 31 A AHR 115 n B 2 BGC 32 B BGC 32 A BGC 111 n B 2 FUB 33 B FUB 33 A FUB 104 n B 2 AHR 34 B AHR 34 A AHR 106 n B 2 FUB 35 B FUB 35 A FUB 107 n B 2 XYP 36 B XYP 36 A XYP 105 n B 2 XYP 37 B XYP 37 A XYP 108 n B 2 AHR 38 B AHR 38 A AHR 109 n C 2 GN1 1 C GN1 1 B GN1 101 n C 2 XYP 2 C XYP 2 B XYP 119 n C 2 FUB 3 C FUB 3 B FUB 127 n C 2 AHR 4 C AHR 4 B AHR 128 n C 2 MAN 5 C MAN 5 B MAN 129 n C 2 AHR 6 C AHR 6 B AHR 130 n C 2 FUB 7 C FUB 7 B FUB 131 n C 2 AHR 8 C AHR 8 B AHR 132 n C 2 MAN 9 C MAN 9 B MAN 137 n C 2 AHR 10 C AHR 10 B AHR 138 n C 2 BGC 11 C BGC 11 B BGC 133 n C 2 XYP 12 C XYP 12 B XYP 135 n C 2 AHR 13 C AHR 13 B AHR 136 n C 2 AHR 14 C AHR 14 B AHR 134 n C 2 XYP 15 C XYP 15 B XYP 122 n C 2 XYP 16 C XYP 16 B XYP 124 n C 2 XYP 17 C XYP 17 B XYP 125 n C 2 XYP 18 C XYP 18 B XYP 126 n C 2 AHR 19 C AHR 19 B AHR 123 n C 2 AHR 20 C AHR 20 B AHR 120 n C 2 AHR 21 C AHR 21 B AHR 121 n C 2 XYP 22 C XYP 22 B XYP 102 n C 2 XYP 23 C XYP 23 B XYP 103 n C 2 AHR 24 C AHR 24 B AHR 110 n C 2 AHR 25 C AHR 25 B AHR 112 n C 2 AHR 26 C AHR 26 B AHR 113 n C 2 GLC 27 C GLC 27 B GLC 114 n C 2 XYP 28 C XYP 28 B XYP 116 n C 2 AHR 29 C AHR 29 B AHR 117 n C 2 AHR 30 C AHR 30 B AHR 118 n C 2 AHR 31 C AHR 31 B AHR 115 n C 2 BGC 32 C BGC 32 B BGC 111 n C 2 FUB 33 C FUB 33 B FUB 104 n C 2 AHR 34 C AHR 34 B AHR 106 n C 2 FUB 35 C FUB 35 B FUB 107 n C 2 XYP 36 C XYP 36 B XYP 105 n C 2 XYP 37 C XYP 37 B XYP 108 n C 2 AHR 38 C AHR 38 B AHR 109 n D 2 GN1 1 D GN1 1 C GN1 101 n D 2 XYP 2 D XYP 2 C XYP 119 n D 2 FUB 3 D FUB 3 C FUB 127 n D 2 AHR 4 D AHR 4 C AHR 128 n D 2 MAN 5 D MAN 5 C MAN 129 n D 2 AHR 6 D AHR 6 C AHR 130 n D 2 FUB 7 D FUB 7 C FUB 131 n D 2 AHR 8 D AHR 8 C AHR 132 n D 2 MAN 9 D MAN 9 C MAN 137 n D 2 AHR 10 D AHR 10 C AHR 138 n D 2 BGC 11 D BGC 11 C BGC 133 n D 2 XYP 12 D XYP 12 C XYP 135 n D 2 AHR 13 D AHR 13 C AHR 136 n D 2 AHR 14 D AHR 14 C AHR 134 n D 2 XYP 15 D XYP 15 C XYP 122 n D 2 XYP 16 D XYP 16 C XYP 124 n D 2 XYP 17 D XYP 17 C XYP 125 n D 2 XYP 18 D XYP 18 C XYP 126 n D 2 AHR 19 D AHR 19 C AHR 123 n D 2 AHR 20 D AHR 20 C AHR 120 n D 2 AHR 21 D AHR 21 C AHR 121 n D 2 XYP 22 D XYP 22 C XYP 102 n D 2 XYP 23 D XYP 23 C XYP 103 n D 2 AHR 24 D AHR 24 C AHR 110 n D 2 AHR 25 D AHR 25 C AHR 112 n D 2 AHR 26 D AHR 26 C AHR 113 n D 2 GLC 27 D GLC 27 C GLC 114 n D 2 XYP 28 D XYP 28 C XYP 116 n D 2 AHR 29 D AHR 29 C AHR 117 n D 2 AHR 30 D AHR 30 C AHR 118 n D 2 AHR 31 D AHR 31 C AHR 115 n D 2 BGC 32 D BGC 32 C BGC 111 n D 2 FUB 33 D FUB 33 C FUB 104 n D 2 AHR 34 D AHR 34 C AHR 106 n D 2 FUB 35 D FUB 35 C FUB 107 n D 2 XYP 36 D XYP 36 C XYP 105 n D 2 XYP 37 D XYP 37 C XYP 108 n D 2 AHR 38 D AHR 38 C AHR 109 n E 2 GN1 1 E GN1 1 D GN1 101 n E 2 XYP 2 E XYP 2 D XYP 119 n E 2 FUB 3 E FUB 3 D FUB 127 n E 2 AHR 4 E AHR 4 D AHR 128 n E 2 MAN 5 E MAN 5 D MAN 129 n E 2 AHR 6 E AHR 6 D AHR 130 n E 2 FUB 7 E FUB 7 D FUB 131 n E 2 AHR 8 E AHR 8 D AHR 132 n E 2 MAN 9 E MAN 9 D MAN 137 n E 2 AHR 10 E AHR 10 D AHR 138 n E 2 BGC 11 E BGC 11 D BGC 133 n E 2 XYP 12 E XYP 12 D XYP 135 n E 2 AHR 13 E AHR 13 D AHR 136 n E 2 AHR 14 E AHR 14 D AHR 134 n E 2 XYP 15 E XYP 15 D XYP 122 n E 2 XYP 16 E XYP 16 D XYP 124 n E 2 XYP 17 E XYP 17 D XYP 125 n E 2 XYP 18 E XYP 18 D XYP 126 n E 2 AHR 19 E AHR 19 D AHR 123 n E 2 AHR 20 E AHR 20 D AHR 120 n E 2 AHR 21 E AHR 21 D AHR 121 n E 2 XYP 22 E XYP 22 D XYP 102 n E 2 XYP 23 E XYP 23 D XYP 103 n E 2 AHR 24 E AHR 24 D AHR 110 n E 2 AHR 25 E AHR 25 D AHR 112 n E 2 AHR 26 E AHR 26 D AHR 113 n E 2 GLC 27 E GLC 27 D GLC 114 n E 2 XYP 28 E XYP 28 D XYP 116 n E 2 AHR 29 E AHR 29 D AHR 117 n E 2 AHR 30 E AHR 30 D AHR 118 n E 2 AHR 31 E AHR 31 D AHR 115 n E 2 BGC 32 E BGC 32 D BGC 111 n E 2 FUB 33 E FUB 33 D FUB 104 n E 2 AHR 34 E AHR 34 D AHR 106 n E 2 FUB 35 E FUB 35 D FUB 107 n E 2 XYP 36 E XYP 36 D XYP 105 n E 2 XYP 37 E XYP 37 D XYP 108 n E 2 AHR 38 E AHR 38 D AHR 109 n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 B GN1 1 ? OP2 ? B GN1 1 OP2 2 1 N 1 C GN1 1 ? OP2 ? C GN1 1 OP2 3 1 N 1 D GN1 1 ? OP2 ? D GN1 1 OP2 4 1 N 1 E GN1 1 ? OP2 ? E GN1 1 OP2 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 21ZT _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 21ZT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 21ZT _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 21ZT _struct.title 'Cryo-EM structure of TLP-2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 21ZT _struct_keywords.text 'Glycofibril, CARBOHYDRATE' _struct_keywords.pdbx_keywords CARBOHYDRATE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 21ZT _struct_ref.pdbx_db_accession 21ZT _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 21ZT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 21ZT _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B GN1 . O4 ? ? ? 1_555 B XYP . C1 ? ? B GN1 1 B XYP 2 1_555 ? ? ? ? ? ? ? 1.403 ? ? covale2 covale both ? B GN1 . O3 ? ? ? 1_555 B XYP . C1 ? ? B GN1 1 B XYP 22 1_555 ? ? ? ? ? ? ? 1.437 ? ? covale3 covale both ? B XYP . O3 ? ? ? 1_555 B FUB . C1 ? ? B XYP 2 B FUB 3 1_555 ? ? ? ? ? ? ? 1.450 ? ? covale4 covale both ? B XYP . O4 ? ? ? 1_555 B XYP . C1 ? ? B XYP 2 B XYP 15 1_555 ? ? ? ? ? ? ? 1.404 ? ? covale5 covale both ? B XYP . O2 ? ? ? 1_555 B AHR . C1 ? ? B XYP 2 B AHR 20 1_555 ? ? ? ? ? ? ? 1.417 ? ? covale6 covale both ? B FUB . O2 ? ? ? 1_555 B AHR . C1 ? ? B FUB 3 B AHR 4 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale7 covale both ? B AHR . O2 ? ? ? 1_555 B MAN . C1 ? ? B AHR 4 B MAN 5 1_555 ? ? ? ? ? ? ? 1.410 ? ? covale8 covale both ? B MAN . O2 ? ? ? 1_555 B AHR . C1 ? ? B MAN 5 B AHR 6 1_555 ? ? ? ? ? ? ? 1.451 ? ? covale9 covale both ? B MAN . O3 ? ? ? 1_555 B BGC . C1 ? ? B MAN 5 B BGC 11 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale10 covale both ? B MAN . O6 ? ? ? 1_555 B AHR . C1 ? ? B MAN 5 B AHR 14 1_555 ? ? ? ? ? ? ? 1.412 ? ? covale11 covale both ? B AHR . O2 ? ? ? 1_555 B FUB . C1 ? ? B AHR 6 B FUB 7 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale12 covale both ? B FUB . O2 ? ? ? 1_555 B AHR . C1 ? ? B FUB 7 B AHR 8 1_555 ? ? ? ? ? ? ? 1.432 ? ? covale13 covale both ? B AHR . O2 ? ? ? 1_555 B MAN . C1 ? ? B AHR 8 B MAN 9 1_555 ? ? ? ? ? ? ? 1.437 ? ? covale14 covale both ? B MAN . O4 ? ? ? 1_555 B AHR . C1 ? ? B MAN 9 B AHR 10 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale15 covale both ? B BGC . O3 ? ? ? 1_555 B XYP . C1 ? ? B BGC 11 B XYP 12 1_555 ? ? ? ? ? ? ? 1.423 ? ? covale16 covale both ? B XYP . O2 ? ? ? 1_555 B AHR . C1 ? ? B XYP 12 B AHR 13 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale17 covale both ? B XYP . O4 ? ? ? 1_555 B XYP . C1 ? ? B XYP 15 B XYP 16 1_555 ? ? ? ? ? ? ? 1.438 ? ? covale18 covale both ? B XYP . O2 ? ? ? 1_555 B AHR . C1 ? ? B XYP 15 B AHR 19 1_555 ? ? ? ? ? ? ? 1.427 ? ? covale19 covale both ? B XYP . O3 ? ? ? 1_555 B XYP . C1 ? ? B XYP 16 B XYP 17 1_555 ? ? ? ? ? ? ? 1.447 ? ? covale20 covale both ? B XYP . O3 ? ? ? 1_555 B XYP . C1 ? ? B XYP 17 B XYP 18 1_555 ? ? ? ? ? ? ? 1.441 ? ? covale21 covale both ? B AHR . O2 ? ? ? 1_555 B AHR . C1 ? ? B AHR 20 B AHR 21 1_555 ? ? ? ? ? ? ? 1.452 ? ? covale22 covale both ? B XYP . O4 ? ? ? 1_555 B XYP . C1 ? ? B XYP 22 B XYP 23 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale23 covale both ? B XYP . O4 ? ? ? 1_555 B AHR . C1 ? ? B XYP 23 B AHR 24 1_555 ? ? ? ? ? ? ? 1.426 ? ? covale24 covale both ? B XYP . O2 ? ? ? 1_555 B FUB . C1 ? ? B XYP 23 B FUB 33 1_555 ? ? ? ? ? ? ? 1.425 ? ? covale25 covale both ? B XYP . O3 ? ? ? 1_555 B XYP . C1 ? ? B XYP 23 B XYP 37 1_555 ? ? ? ? ? ? ? 1.453 ? ? covale26 covale both ? B AHR . O2 ? ? ? 1_555 B AHR . C1 ? ? B AHR 24 B AHR 25 1_555 ? ? ? ? ? ? ? 1.410 ? ? covale27 covale both ? B AHR . O3 ? ? ? 1_555 B BGC . C1 ? ? B AHR 24 B BGC 32 1_555 ? ? ? ? ? ? ? 1.425 ? ? covale28 covale both ? B AHR . O5 ? ? ? 1_555 B AHR . C1 ? ? B AHR 25 B AHR 26 1_555 ? ? ? ? ? ? ? 1.441 ? ? covale29 covale both ? B AHR . O5 ? ? ? 1_555 B GLC . C1 ? ? B AHR 26 B GLC 27 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale30 covale both ? B GLC . O2 ? ? ? 1_555 B XYP . C1 ? ? B GLC 27 B XYP 28 1_555 ? ? ? ? ? ? ? 1.438 ? ? covale31 covale both ? B GLC . O3 ? ? ? 1_555 B AHR . C1 ? ? B GLC 27 B AHR 31 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale32 covale both ? B XYP . O2 ? ? ? 1_555 B AHR . C1 ? ? B XYP 28 B AHR 29 1_555 ? ? ? ? ? ? ? 1.413 ? ? covale33 covale both ? B XYP . O4 ? ? ? 1_555 B AHR . C1 ? ? B XYP 28 B AHR 30 1_555 ? ? ? ? ? ? ? 1.420 ? ? covale34 covale both ? B FUB . O2 ? ? ? 1_555 B AHR . C1 ? ? B FUB 33 B AHR 34 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale35 covale both ? B FUB . O3 ? ? ? 1_555 B XYP . C1 ? ? B FUB 33 B XYP 36 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale36 covale both ? B AHR . O2 ? ? ? 1_555 B FUB . C1 ? ? B AHR 34 B FUB 35 1_555 ? ? ? ? ? ? ? 1.425 ? ? covale37 covale both ? B XYP . O3 ? ? ? 1_555 B AHR . C1 ? ? B XYP 37 B AHR 38 1_555 ? ? ? ? ? ? ? 1.447 ? ? covale38 covale both ? C GN1 . O4 ? ? ? 1_555 C XYP . C1 ? ? C GN1 1 C XYP 2 1_555 ? ? ? ? ? ? ? 1.402 ? ? covale39 covale both ? C GN1 . O3 ? ? ? 1_555 C XYP . C1 ? ? C GN1 1 C XYP 22 1_555 ? ? ? ? ? ? ? 1.437 ? ? covale40 covale both ? C XYP . O3 ? ? ? 1_555 C FUB . C1 ? ? C XYP 2 C FUB 3 1_555 ? ? ? ? ? ? ? 1.450 ? ? covale41 covale both ? C XYP . O4 ? ? ? 1_555 C XYP . C1 ? ? C XYP 2 C XYP 15 1_555 ? ? ? ? ? ? ? 1.404 ? ? covale42 covale both ? C XYP . O2 ? ? ? 1_555 C AHR . C1 ? ? C XYP 2 C AHR 20 1_555 ? ? ? ? ? ? ? 1.417 ? ? covale43 covale both ? C FUB . O2 ? ? ? 1_555 C AHR . C1 ? ? C FUB 3 C AHR 4 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale44 covale both ? C AHR . O2 ? ? ? 1_555 C MAN . C1 ? ? C AHR 4 C MAN 5 1_555 ? ? ? ? ? ? ? 1.410 ? ? covale45 covale both ? C MAN . O2 ? ? ? 1_555 C AHR . C1 ? ? C MAN 5 C AHR 6 1_555 ? ? ? ? ? ? ? 1.451 ? ? covale46 covale both ? C MAN . O3 ? ? ? 1_555 C BGC . C1 ? ? C MAN 5 C BGC 11 1_555 ? ? ? ? ? ? ? 1.420 ? ? covale47 covale both ? C MAN . O6 ? ? ? 1_555 C AHR . C1 ? ? C MAN 5 C AHR 14 1_555 ? ? ? ? ? ? ? 1.412 ? ? covale48 covale both ? C AHR . O2 ? ? ? 1_555 C FUB . C1 ? ? C AHR 6 C FUB 7 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale49 covale both ? C FUB . O2 ? ? ? 1_555 C AHR . C1 ? ? C FUB 7 C AHR 8 1_555 ? ? ? ? ? ? ? 1.432 ? ? covale50 covale both ? C AHR . O2 ? ? ? 1_555 C MAN . C1 ? ? C AHR 8 C MAN 9 1_555 ? ? ? ? ? ? ? 1.438 ? ? covale51 covale both ? C MAN . O4 ? ? ? 1_555 C AHR . C1 ? ? C MAN 9 C AHR 10 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale52 covale both ? C BGC . O3 ? ? ? 1_555 C XYP . C1 ? ? C BGC 11 C XYP 12 1_555 ? ? ? ? ? ? ? 1.422 ? ? covale53 covale both ? C XYP . O2 ? ? ? 1_555 C AHR . C1 ? ? C XYP 12 C AHR 13 1_555 ? ? ? ? ? ? ? 1.422 ? ? covale54 covale both ? C XYP . O4 ? ? ? 1_555 C XYP . C1 ? ? C XYP 15 C XYP 16 1_555 ? ? ? ? ? ? ? 1.438 ? ? covale55 covale both ? C XYP . O2 ? ? ? 1_555 C AHR . C1 ? ? C XYP 15 C AHR 19 1_555 ? ? ? ? ? ? ? 1.427 ? ? covale56 covale both ? C XYP . O3 ? ? ? 1_555 C XYP . C1 ? ? C XYP 16 C XYP 17 1_555 ? ? ? ? ? ? ? 1.447 ? ? covale57 covale both ? C XYP . O3 ? ? ? 1_555 C XYP . C1 ? ? C XYP 17 C XYP 18 1_555 ? ? ? ? ? ? ? 1.441 ? ? covale58 covale both ? C AHR . O2 ? ? ? 1_555 C AHR . C1 ? ? C AHR 20 C AHR 21 1_555 ? ? ? ? ? ? ? 1.451 ? ? covale59 covale both ? C XYP . O4 ? ? ? 1_555 C XYP . C1 ? ? C XYP 22 C XYP 23 1_555 ? ? ? ? ? ? ? 1.434 ? ? covale60 covale both ? C XYP . O4 ? ? ? 1_555 C AHR . C1 ? ? C XYP 23 C AHR 24 1_555 ? ? ? ? ? ? ? 1.426 ? ? covale61 covale both ? C XYP . O2 ? ? ? 1_555 C FUB . C1 ? ? C XYP 23 C FUB 33 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale62 covale both ? C XYP . O3 ? ? ? 1_555 C XYP . C1 ? ? C XYP 23 C XYP 37 1_555 ? ? ? ? ? ? ? 1.453 ? ? covale63 covale both ? C AHR . O2 ? ? ? 1_555 C AHR . C1 ? ? C AHR 24 C AHR 25 1_555 ? ? ? ? ? ? ? 1.411 ? ? covale64 covale both ? C AHR . O3 ? ? ? 1_555 C BGC . C1 ? ? C AHR 24 C BGC 32 1_555 ? ? ? ? ? ? ? 1.425 ? ? covale65 covale both ? C AHR . O5 ? ? ? 1_555 C AHR . C1 ? ? C AHR 25 C AHR 26 1_555 ? ? ? ? ? ? ? 1.441 ? ? covale66 covale both ? C AHR . O5 ? ? ? 1_555 C GLC . C1 ? ? C AHR 26 C GLC 27 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale67 covale both ? C GLC . O2 ? ? ? 1_555 C XYP . C1 ? ? C GLC 27 C XYP 28 1_555 ? ? ? ? ? ? ? 1.439 ? ? covale68 covale both ? C GLC . O3 ? ? ? 1_555 C AHR . C1 ? ? C GLC 27 C AHR 31 1_555 ? ? ? ? ? ? ? 1.420 ? ? covale69 covale both ? C XYP . O2 ? ? ? 1_555 C AHR . C1 ? ? C XYP 28 C AHR 29 1_555 ? ? ? ? ? ? ? 1.414 ? ? covale70 covale both ? C XYP . O4 ? ? ? 1_555 C AHR . C1 ? ? C XYP 28 C AHR 30 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale71 covale both ? C FUB . O2 ? ? ? 1_555 C AHR . C1 ? ? C FUB 33 C AHR 34 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale72 covale both ? C FUB . O3 ? ? ? 1_555 C XYP . C1 ? ? C FUB 33 C XYP 36 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale73 covale both ? C AHR . O2 ? ? ? 1_555 C FUB . C1 ? ? C AHR 34 C FUB 35 1_555 ? ? ? ? ? ? ? 1.425 ? ? covale74 covale both ? C XYP . O3 ? ? ? 1_555 C AHR . C1 ? ? C XYP 37 C AHR 38 1_555 ? ? ? ? ? ? ? 1.446 ? ? covale75 covale both ? D GN1 . O4 ? ? ? 1_555 D XYP . C1 ? ? D GN1 1 D XYP 2 1_555 ? ? ? ? ? ? ? 1.403 ? ? covale76 covale both ? D GN1 . O3 ? ? ? 1_555 D XYP . C1 ? ? D GN1 1 D XYP 22 1_555 ? ? ? ? ? ? ? 1.437 ? ? covale77 covale both ? D XYP . O3 ? ? ? 1_555 D FUB . C1 ? ? D XYP 2 D FUB 3 1_555 ? ? ? ? ? ? ? 1.450 ? ? covale78 covale both ? D XYP . O4 ? ? ? 1_555 D XYP . C1 ? ? D XYP 2 D XYP 15 1_555 ? ? ? ? ? ? ? 1.405 ? ? covale79 covale both ? D XYP . O2 ? ? ? 1_555 D AHR . C1 ? ? D XYP 2 D AHR 20 1_555 ? ? ? ? ? ? ? 1.417 ? ? covale80 covale both ? D FUB . O2 ? ? ? 1_555 D AHR . C1 ? ? D FUB 3 D AHR 4 1_555 ? ? ? ? ? ? ? 1.434 ? ? covale81 covale both ? D AHR . O2 ? ? ? 1_555 D MAN . C1 ? ? D AHR 4 D MAN 5 1_555 ? ? ? ? ? ? ? 1.409 ? ? covale82 covale both ? D MAN . O2 ? ? ? 1_555 D AHR . C1 ? ? D MAN 5 D AHR 6 1_555 ? ? ? ? ? ? ? 1.450 ? ? covale83 covale both ? D MAN . O3 ? ? ? 1_555 D BGC . C1 ? ? D MAN 5 D BGC 11 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale84 covale both ? D MAN . O6 ? ? ? 1_555 D AHR . C1 ? ? D MAN 5 D AHR 14 1_555 ? ? ? ? ? ? ? 1.412 ? ? covale85 covale both ? D AHR . O2 ? ? ? 1_555 D FUB . C1 ? ? D AHR 6 D FUB 7 1_555 ? ? ? ? ? ? ? 1.422 ? ? covale86 covale both ? D FUB . O2 ? ? ? 1_555 D AHR . C1 ? ? D FUB 7 D AHR 8 1_555 ? ? ? ? ? ? ? 1.432 ? ? covale87 covale both ? D AHR . O2 ? ? ? 1_555 D MAN . C1 ? ? D AHR 8 D MAN 9 1_555 ? ? ? ? ? ? ? 1.437 ? ? covale88 covale both ? D MAN . O4 ? ? ? 1_555 D AHR . C1 ? ? D MAN 9 D AHR 10 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale89 covale both ? D BGC . O3 ? ? ? 1_555 D XYP . C1 ? ? D BGC 11 D XYP 12 1_555 ? ? ? ? ? ? ? 1.423 ? ? covale90 covale both ? D XYP . O2 ? ? ? 1_555 D AHR . C1 ? ? D XYP 12 D AHR 13 1_555 ? ? ? ? ? ? ? 1.422 ? ? covale91 covale both ? D XYP . O4 ? ? ? 1_555 D XYP . C1 ? ? D XYP 15 D XYP 16 1_555 ? ? ? ? ? ? ? 1.438 ? ? covale92 covale both ? D XYP . O2 ? ? ? 1_555 D AHR . C1 ? ? D XYP 15 D AHR 19 1_555 ? ? ? ? ? ? ? 1.427 ? ? covale93 covale both ? D XYP . O3 ? ? ? 1_555 D XYP . C1 ? ? D XYP 16 D XYP 17 1_555 ? ? ? ? ? ? ? 1.448 ? ? covale94 covale both ? D XYP . O3 ? ? ? 1_555 D XYP . C1 ? ? D XYP 17 D XYP 18 1_555 ? ? ? ? ? ? ? 1.442 ? ? covale95 covale both ? D AHR . O2 ? ? ? 1_555 D AHR . C1 ? ? D AHR 20 D AHR 21 1_555 ? ? ? ? ? ? ? 1.452 ? ? covale96 covale both ? D XYP . O4 ? ? ? 1_555 D XYP . C1 ? ? D XYP 22 D XYP 23 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale97 covale both ? D XYP . O4 ? ? ? 1_555 D AHR . C1 ? ? D XYP 23 D AHR 24 1_555 ? ? ? ? ? ? ? 1.426 ? ? covale98 covale both ? D XYP . O2 ? ? ? 1_555 D FUB . C1 ? ? D XYP 23 D FUB 33 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale99 covale both ? D XYP . O3 ? ? ? 1_555 D XYP . C1 ? ? D XYP 23 D XYP 37 1_555 ? ? ? ? ? ? ? 1.452 ? ? covale100 covale both ? D AHR . O2 ? ? ? 1_555 D AHR . C1 ? ? D AHR 24 D AHR 25 1_555 ? ? ? ? ? ? ? 1.410 ? ? covale101 covale both ? D AHR . O3 ? ? ? 1_555 D BGC . C1 ? ? D AHR 24 D BGC 32 1_555 ? ? ? ? ? ? ? 1.425 ? ? covale102 covale both ? D AHR . O5 ? ? ? 1_555 D AHR . C1 ? ? D AHR 25 D AHR 26 1_555 ? ? ? ? ? ? ? 1.441 ? ? covale103 covale both ? D AHR . O5 ? ? ? 1_555 D GLC . C1 ? ? D AHR 26 D GLC 27 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale104 covale both ? D GLC . O2 ? ? ? 1_555 D XYP . C1 ? ? D GLC 27 D XYP 28 1_555 ? ? ? ? ? ? ? 1.438 ? ? covale105 covale both ? D GLC . O3 ? ? ? 1_555 D AHR . C1 ? ? D GLC 27 D AHR 31 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale106 covale both ? D XYP . O2 ? ? ? 1_555 D AHR . C1 ? ? D XYP 28 D AHR 29 1_555 ? ? ? ? ? ? ? 1.414 ? ? covale107 covale both ? D XYP . O4 ? ? ? 1_555 D AHR . C1 ? ? D XYP 28 D AHR 30 1_555 ? ? ? ? ? ? ? 1.420 ? ? covale108 covale both ? D FUB . O2 ? ? ? 1_555 D AHR . C1 ? ? D FUB 33 D AHR 34 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale109 covale both ? D FUB . O3 ? ? ? 1_555 D XYP . C1 ? ? D FUB 33 D XYP 36 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale110 covale both ? D AHR . O2 ? ? ? 1_555 D FUB . C1 ? ? D AHR 34 D FUB 35 1_555 ? ? ? ? ? ? ? 1.425 ? ? covale111 covale both ? D XYP . O3 ? ? ? 1_555 D AHR . C1 ? ? D XYP 37 D AHR 38 1_555 ? ? ? ? ? ? ? 1.446 ? ? covale112 covale both ? E GN1 . O4 ? ? ? 1_555 E XYP . C1 ? ? E GN1 1 E XYP 2 1_555 ? ? ? ? ? ? ? 1.403 ? ? covale113 covale both ? E GN1 . O3 ? ? ? 1_555 E XYP . C1 ? ? E GN1 1 E XYP 22 1_555 ? ? ? ? ? ? ? 1.437 ? ? covale114 covale both ? E XYP . O3 ? ? ? 1_555 E FUB . C1 ? ? E XYP 2 E FUB 3 1_555 ? ? ? ? ? ? ? 1.450 ? ? covale115 covale both ? E XYP . O4 ? ? ? 1_555 E XYP . C1 ? ? E XYP 2 E XYP 15 1_555 ? ? ? ? ? ? ? 1.404 ? ? covale116 covale both ? E XYP . O2 ? ? ? 1_555 E AHR . C1 ? ? E XYP 2 E AHR 20 1_555 ? ? ? ? ? ? ? 1.417 ? ? covale117 covale both ? E FUB . O2 ? ? ? 1_555 E AHR . C1 ? ? E FUB 3 E AHR 4 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale118 covale both ? E AHR . O2 ? ? ? 1_555 E MAN . C1 ? ? E AHR 4 E MAN 5 1_555 ? ? ? ? ? ? ? 1.410 ? ? covale119 covale both ? E MAN . O2 ? ? ? 1_555 E AHR . C1 ? ? E MAN 5 E AHR 6 1_555 ? ? ? ? ? ? ? 1.451 ? ? covale120 covale both ? E MAN . O3 ? ? ? 1_555 E BGC . C1 ? ? E MAN 5 E BGC 11 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale121 covale both ? E MAN . O6 ? ? ? 1_555 E AHR . C1 ? ? E MAN 5 E AHR 14 1_555 ? ? ? ? ? ? ? 1.411 ? ? covale122 covale both ? E AHR . O2 ? ? ? 1_555 E FUB . C1 ? ? E AHR 6 E FUB 7 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale123 covale both ? E FUB . O2 ? ? ? 1_555 E AHR . C1 ? ? E FUB 7 E AHR 8 1_555 ? ? ? ? ? ? ? 1.432 ? ? covale124 covale both ? E AHR . O2 ? ? ? 1_555 E MAN . C1 ? ? E AHR 8 E MAN 9 1_555 ? ? ? ? ? ? ? 1.436 ? ? covale125 covale both ? E MAN . O4 ? ? ? 1_555 E AHR . C1 ? ? E MAN 9 E AHR 10 1_555 ? ? ? ? ? ? ? 1.425 ? ? covale126 covale both ? E BGC . O3 ? ? ? 1_555 E XYP . C1 ? ? E BGC 11 E XYP 12 1_555 ? ? ? ? ? ? ? 1.423 ? ? covale127 covale both ? E XYP . O2 ? ? ? 1_555 E AHR . C1 ? ? E XYP 12 E AHR 13 1_555 ? ? ? ? ? ? ? 1.422 ? ? covale128 covale both ? E XYP . O4 ? ? ? 1_555 E XYP . C1 ? ? E XYP 15 E XYP 16 1_555 ? ? ? ? ? ? ? 1.438 ? ? covale129 covale both ? E XYP . O2 ? ? ? 1_555 E AHR . C1 ? ? E XYP 15 E AHR 19 1_555 ? ? ? ? ? ? ? 1.427 ? ? covale130 covale both ? E XYP . O3 ? ? ? 1_555 E XYP . C1 ? ? E XYP 16 E XYP 17 1_555 ? ? ? ? ? ? ? 1.448 ? ? covale131 covale both ? E XYP . O3 ? ? ? 1_555 E XYP . C1 ? ? E XYP 17 E XYP 18 1_555 ? ? ? ? ? ? ? 1.441 ? ? covale132 covale both ? E AHR . O2 ? ? ? 1_555 E AHR . C1 ? ? E AHR 20 E AHR 21 1_555 ? ? ? ? ? ? ? 1.452 ? ? covale133 covale both ? E XYP . O4 ? ? ? 1_555 E XYP . C1 ? ? E XYP 22 E XYP 23 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale134 covale both ? E XYP . O4 ? ? ? 1_555 E AHR . C1 ? ? E XYP 23 E AHR 24 1_555 ? ? ? ? ? ? ? 1.427 ? ? covale135 covale both ? E XYP . O2 ? ? ? 1_555 E FUB . C1 ? ? E XYP 23 E FUB 33 1_555 ? ? ? ? ? ? ? 1.425 ? ? covale136 covale both ? E XYP . O3 ? ? ? 1_555 E XYP . C1 ? ? E XYP 23 E XYP 37 1_555 ? ? ? ? ? ? ? 1.453 ? ? covale137 covale both ? E AHR . O2 ? ? ? 1_555 E AHR . C1 ? ? E AHR 24 E AHR 25 1_555 ? ? ? ? ? ? ? 1.410 ? ? covale138 covale both ? E AHR . O3 ? ? ? 1_555 E BGC . C1 ? ? E AHR 24 E BGC 32 1_555 ? ? ? ? ? ? ? 1.425 ? ? covale139 covale both ? E AHR . O5 ? ? ? 1_555 E AHR . C1 ? ? E AHR 25 E AHR 26 1_555 ? ? ? ? ? ? ? 1.442 ? ? covale140 covale both ? E AHR . O5 ? ? ? 1_555 E GLC . C1 ? ? E AHR 26 E GLC 27 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale141 covale both ? E GLC . O2 ? ? ? 1_555 E XYP . C1 ? ? E GLC 27 E XYP 28 1_555 ? ? ? ? ? ? ? 1.438 ? ? covale142 covale both ? E GLC . O3 ? ? ? 1_555 E AHR . C1 ? ? E GLC 27 E AHR 31 1_555 ? ? ? ? ? ? ? 1.420 ? ? covale143 covale both ? E XYP . O2 ? ? ? 1_555 E AHR . C1 ? ? E XYP 28 E AHR 29 1_555 ? ? ? ? ? ? ? 1.413 ? ? covale144 covale both ? E XYP . O4 ? ? ? 1_555 E AHR . C1 ? ? E XYP 28 E AHR 30 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale145 covale both ? E FUB . O2 ? ? ? 1_555 E AHR . C1 ? ? E FUB 33 E AHR 34 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale146 covale both ? E FUB . O3 ? ? ? 1_555 E XYP . C1 ? ? E FUB 33 E XYP 36 1_555 ? ? ? ? ? ? ? 1.427 ? ? covale147 covale both ? E AHR . O2 ? ? ? 1_555 E FUB . C1 ? ? E AHR 34 E FUB 35 1_555 ? ? ? ? ? ? ? 1.425 ? ? covale148 covale both ? E XYP . O3 ? ? ? 1_555 E AHR . C1 ? ? E XYP 37 E AHR 38 1_555 ? ? ? ? ? ? ? 1.446 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 21ZT _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG A SER 2 ? ? P E GN1 1 ? ? 1.63 2 1 OG A SER 8 ? ? P B GN1 1 ? ? 1.63 3 1 OG A SER 4 ? ? P D GN1 1 ? ? 1.63 4 1 OG A SER 6 ? ? P C GN1 1 ? ? 1.63 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 21ZT _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 21ZT _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.50 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 16082 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name TLP-2 _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 21ZT _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1300 _em_imaging.nominal_defocus_max 1800 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 21ZT _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 21ZT _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AHR O5 O N N 1 AHR C5 C N N 2 AHR C4 C N S 3 AHR O4 O N N 4 AHR C3 C N R 5 AHR O3 O N N 6 AHR C2 C N R 7 AHR O2 O N N 8 AHR C1 C N R 9 AHR O1 O N N 10 AHR HO5 H N N 11 AHR H51 H N N 12 AHR H52 H N N 13 AHR H4 H N N 14 AHR H3 H N N 15 AHR HO3 H N N 16 AHR H2 H N N 17 AHR HO2 H N N 18 AHR H1 H N N 19 AHR HO1 H N N 20 ALA N N N N 21 ALA CA C N S 22 ALA C C N N 23 ALA O O N N 24 ALA CB C N N 25 ALA OXT O N N 26 ALA H H N N 27 ALA H2 H N N 28 ALA HA H N N 29 ALA HB1 H N N 30 ALA HB2 H N N 31 ALA HB3 H N N 32 ALA HXT H N N 33 BGC C2 C N R 34 BGC C3 C N S 35 BGC C4 C N S 36 BGC C5 C N R 37 BGC C6 C N N 38 BGC C1 C N R 39 BGC O1 O N N 40 BGC O2 O N N 41 BGC O3 O N N 42 BGC O4 O N N 43 BGC O5 O N N 44 BGC O6 O N N 45 BGC H2 H N N 46 BGC H3 H N N 47 BGC H4 H N N 48 BGC H5 H N N 49 BGC H61 H N N 50 BGC H62 H N N 51 BGC H1 H N N 52 BGC HO1 H N N 53 BGC HO2 H N N 54 BGC HO3 H N N 55 BGC HO4 H N N 56 BGC HO6 H N N 57 FUB O5 O N N 58 FUB C5 C N N 59 FUB C4 C N S 60 FUB O4 O N N 61 FUB C3 C N R 62 FUB O3 O N N 63 FUB C2 C N R 64 FUB O2 O N N 65 FUB C1 C N S 66 FUB O1 O N N 67 FUB HO5 H N N 68 FUB H51 H N N 69 FUB H52 H N N 70 FUB H4 H N N 71 FUB H3 H N N 72 FUB HO3 H N N 73 FUB H2 H N N 74 FUB HO2 H N N 75 FUB H1 H N N 76 FUB HO1 H N N 77 GLC C1 C N S 78 GLC C2 C N R 79 GLC C3 C N S 80 GLC C4 C N S 81 GLC C5 C N R 82 GLC C6 C N N 83 GLC O1 O N N 84 GLC O2 O N N 85 GLC O3 O N N 86 GLC O4 O N N 87 GLC O5 O N N 88 GLC O6 O N N 89 GLC H1 H N N 90 GLC H2 H N N 91 GLC H3 H N N 92 GLC H4 H N N 93 GLC H5 H N N 94 GLC H61 H N N 95 GLC H62 H N N 96 GLC HO1 H N N 97 GLC HO2 H N N 98 GLC HO3 H N N 99 GLC HO4 H N N 100 GLC HO6 H N N 101 GN1 C1 C N R 102 GN1 OP1 O N N 103 GN1 P P N N 104 GN1 OP2 O N N 105 GN1 OP3 O N N 106 GN1 C2 C N R 107 GN1 C3 C N R 108 GN1 C4 C N S 109 GN1 C5 C N R 110 GN1 C6 C N N 111 GN1 C8 C N N 112 GN1 O1 O N N 113 GN1 O3 O N N 114 GN1 O4 O N N 115 GN1 O5 O N N 116 GN1 N2 N N N 117 GN1 C7 C N N 118 GN1 O6 O N N 119 GN1 O7 O N N 120 GN1 H1 H N N 121 GN1 HOP1 H N N 122 GN1 HOP2 H N N 123 GN1 H2 H N N 124 GN1 H3 H N N 125 GN1 H4 H N N 126 GN1 H5 H N N 127 GN1 H61 H N N 128 GN1 H62 H N N 129 GN1 H81 H N N 130 GN1 H82 H N N 131 GN1 H83 H N N 132 GN1 HO3 H N N 133 GN1 HO4 H N N 134 GN1 HN2 H N N 135 GN1 HO6 H N N 136 MAN C1 C N S 137 MAN C2 C N S 138 MAN C3 C N S 139 MAN C4 C N S 140 MAN C5 C N R 141 MAN C6 C N N 142 MAN O1 O N N 143 MAN O2 O N N 144 MAN O3 O N N 145 MAN O4 O N N 146 MAN O5 O N N 147 MAN O6 O N N 148 MAN H1 H N N 149 MAN H2 H N N 150 MAN H3 H N N 151 MAN H4 H N N 152 MAN H5 H N N 153 MAN H61 H N N 154 MAN H62 H N N 155 MAN HO1 H N N 156 MAN HO2 H N N 157 MAN HO3 H N N 158 MAN HO4 H N N 159 MAN HO6 H N N 160 SER N N N N 161 SER CA C N S 162 SER C C N N 163 SER O O N N 164 SER CB C N N 165 SER OG O N N 166 SER OXT O N N 167 SER H H N N 168 SER H2 H N N 169 SER HA H N N 170 SER HB2 H N N 171 SER HB3 H N N 172 SER HG H N N 173 SER HXT H N N 174 XYP O1 O N N 175 XYP C1 C N R 176 XYP C2 C N R 177 XYP C3 C N S 178 XYP C4 C N R 179 XYP C5 C N N 180 XYP O2 O N N 181 XYP O3 O N N 182 XYP O4 O N N 183 XYP O5 O N N 184 XYP HO1 H N N 185 XYP H1 H N N 186 XYP H2 H N N 187 XYP H3 H N N 188 XYP H4 H N N 189 XYP H51 H N N 190 XYP H52 H N N 191 XYP HO2 H N N 192 XYP HO3 H N N 193 XYP HO4 H N N 194 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AHR O5 C5 sing N N 1 AHR O5 HO5 sing N N 2 AHR C5 C4 sing N N 3 AHR C5 H51 sing N N 4 AHR C5 H52 sing N N 5 AHR C4 O4 sing N N 6 AHR C4 C3 sing N N 7 AHR C4 H4 sing N N 8 AHR O4 C1 sing N N 9 AHR C3 O3 sing N N 10 AHR C3 C2 sing N N 11 AHR C3 H3 sing N N 12 AHR O3 HO3 sing N N 13 AHR C2 O2 sing N N 14 AHR C2 C1 sing N N 15 AHR C2 H2 sing N N 16 AHR O2 HO2 sing N N 17 AHR C1 O1 sing N N 18 AHR C1 H1 sing N N 19 AHR O1 HO1 sing N N 20 ALA N CA sing N N 21 ALA N H sing N N 22 ALA N H2 sing N N 23 ALA CA C sing N N 24 ALA CA CB sing N N 25 ALA CA HA sing N N 26 ALA C O doub N N 27 ALA C OXT sing N N 28 ALA CB HB1 sing N N 29 ALA CB HB2 sing N N 30 ALA CB HB3 sing N N 31 ALA OXT HXT sing N N 32 BGC C2 C3 sing N N 33 BGC C2 C1 sing N N 34 BGC C2 O2 sing N N 35 BGC C2 H2 sing N N 36 BGC C3 C4 sing N N 37 BGC C3 O3 sing N N 38 BGC C3 H3 sing N N 39 BGC C4 C5 sing N N 40 BGC C4 O4 sing N N 41 BGC C4 H4 sing N N 42 BGC C5 C6 sing N N 43 BGC C5 O5 sing N N 44 BGC C5 H5 sing N N 45 BGC C6 O6 sing N N 46 BGC C6 H61 sing N N 47 BGC C6 H62 sing N N 48 BGC C1 O1 sing N N 49 BGC C1 O5 sing N N 50 BGC C1 H1 sing N N 51 BGC O1 HO1 sing N N 52 BGC O2 HO2 sing N N 53 BGC O3 HO3 sing N N 54 BGC O4 HO4 sing N N 55 BGC O6 HO6 sing N N 56 FUB C5 O5 sing N N 57 FUB O5 HO5 sing N N 58 FUB C4 C5 sing N N 59 FUB C5 H51 sing N N 60 FUB C5 H52 sing N N 61 FUB C3 C4 sing N N 62 FUB C4 O4 sing N N 63 FUB C4 H4 sing N N 64 FUB C1 O4 sing N N 65 FUB O3 C3 sing N N 66 FUB C2 C3 sing N N 67 FUB C3 H3 sing N N 68 FUB O3 HO3 sing N N 69 FUB C2 O2 sing N N 70 FUB C2 C1 sing N N 71 FUB C2 H2 sing N N 72 FUB O2 HO2 sing N N 73 FUB C1 O1 sing N N 74 FUB C1 H1 sing N N 75 FUB O1 HO1 sing N N 76 GLC C1 C2 sing N N 77 GLC C1 O1 sing N N 78 GLC C1 O5 sing N N 79 GLC C1 H1 sing N N 80 GLC C2 C3 sing N N 81 GLC C2 O2 sing N N 82 GLC C2 H2 sing N N 83 GLC C3 C4 sing N N 84 GLC C3 O3 sing N N 85 GLC C3 H3 sing N N 86 GLC C4 C5 sing N N 87 GLC C4 O4 sing N N 88 GLC C4 H4 sing N N 89 GLC C5 C6 sing N N 90 GLC C5 O5 sing N N 91 GLC C5 H5 sing N N 92 GLC C6 O6 sing N N 93 GLC C6 H61 sing N N 94 GLC C6 H62 sing N N 95 GLC O1 HO1 sing N N 96 GLC O2 HO2 sing N N 97 GLC O3 HO3 sing N N 98 GLC O4 HO4 sing N N 99 GLC O6 HO6 sing N N 100 GN1 C1 O1 sing N N 101 GN1 C1 O5 sing N N 102 GN1 C1 C2 sing N N 103 GN1 C1 H1 sing N N 104 GN1 OP1 P sing N N 105 GN1 OP1 HOP1 sing N N 106 GN1 P OP3 doub N N 107 GN1 P OP2 sing N N 108 GN1 P O1 sing N N 109 GN1 OP2 HOP2 sing N N 110 GN1 C2 C3 sing N N 111 GN1 C2 N2 sing N N 112 GN1 C2 H2 sing N N 113 GN1 C3 C4 sing N N 114 GN1 C3 O3 sing N N 115 GN1 C3 H3 sing N N 116 GN1 C4 C5 sing N N 117 GN1 C4 O4 sing N N 118 GN1 C4 H4 sing N N 119 GN1 C5 C6 sing N N 120 GN1 C5 O5 sing N N 121 GN1 C5 H5 sing N N 122 GN1 C6 O6 sing N N 123 GN1 C6 H61 sing N N 124 GN1 C6 H62 sing N N 125 GN1 C8 C7 sing N N 126 GN1 C8 H81 sing N N 127 GN1 C8 H82 sing N N 128 GN1 C8 H83 sing N N 129 GN1 O3 HO3 sing N N 130 GN1 O4 HO4 sing N N 131 GN1 N2 C7 sing N N 132 GN1 N2 HN2 sing N N 133 GN1 C7 O7 doub N N 134 GN1 O6 HO6 sing N N 135 MAN C1 C2 sing N N 136 MAN C1 O1 sing N N 137 MAN C1 O5 sing N N 138 MAN C1 H1 sing N N 139 MAN C2 C3 sing N N 140 MAN C2 O2 sing N N 141 MAN C2 H2 sing N N 142 MAN C3 C4 sing N N 143 MAN C3 O3 sing N N 144 MAN C3 H3 sing N N 145 MAN C4 C5 sing N N 146 MAN C4 O4 sing N N 147 MAN C4 H4 sing N N 148 MAN C5 C6 sing N N 149 MAN C5 O5 sing N N 150 MAN C5 H5 sing N N 151 MAN C6 O6 sing N N 152 MAN C6 H61 sing N N 153 MAN C6 H62 sing N N 154 MAN O1 HO1 sing N N 155 MAN O2 HO2 sing N N 156 MAN O3 HO3 sing N N 157 MAN O4 HO4 sing N N 158 MAN O6 HO6 sing N N 159 SER N CA sing N N 160 SER N H sing N N 161 SER N H2 sing N N 162 SER CA C sing N N 163 SER CA CB sing N N 164 SER CA HA sing N N 165 SER C O doub N N 166 SER C OXT sing N N 167 SER CB OG sing N N 168 SER CB HB2 sing N N 169 SER CB HB3 sing N N 170 SER OG HG sing N N 171 SER OXT HXT sing N N 172 XYP O1 C1 sing N N 173 XYP O1 HO1 sing N N 174 XYP C1 C2 sing N N 175 XYP C1 O5 sing N N 176 XYP C1 H1 sing N N 177 XYP C2 C3 sing N N 178 XYP C2 O2 sing N N 179 XYP C2 H2 sing N N 180 XYP C3 C4 sing N N 181 XYP C3 O3 sing N N 182 XYP C3 H3 sing N N 183 XYP C4 C5 sing N N 184 XYP C4 O4 sing N N 185 XYP C4 H4 sing N N 186 XYP C5 O5 sing N N 187 XYP C5 H51 sing N N 188 XYP C5 H52 sing N N 189 XYP O2 HO2 sing N N 190 XYP O3 HO3 sing N N 191 XYP O4 HO4 sing N N 192 # _em_admin.current_status REL _em_admin.deposition_date 2026-01-05 _em_admin.deposition_site PDBJ _em_admin.entry_id 21ZT _em_admin.last_update 2026-06-24 _em_admin.map_release_date 2026-06-24 _em_admin.title 'Cryo-EM structure of TLP-2' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 1300146 _em_entity_assembly_naturalsource.organism 'algae metagenome' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 108.7 _em_helical_entity.axial_rise_per_subunit 6.2 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 92478205 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GN1 1 n 2 XYP 2 n 2 FUB 3 n 2 AHR 4 n 2 MAN 5 n 2 AHR 6 n 2 FUB 7 n 2 AHR 8 n 2 MAN 9 n 2 AHR 10 n 2 BGC 11 n 2 XYP 12 n 2 AHR 13 n 2 AHR 14 n 2 XYP 15 n 2 XYP 16 n 2 XYP 17 n 2 XYP 18 n 2 AHR 19 n 2 AHR 20 n 2 AHR 21 n 2 XYP 22 n 2 XYP 23 n 2 AHR 24 n 2 AHR 25 n 2 AHR 26 n 2 GLC 27 n 2 XYP 28 n 2 AHR 29 n 2 AHR 30 n 2 AHR 31 n 2 BGC 32 n 2 FUB 33 n 2 AHR 34 n 2 FUB 35 n 2 XYP 36 n 2 XYP 37 n 2 AHR 38 n # _atom_sites.entry_id 21ZT _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P # loop_ #