HEADER DE NOVO PROTEIN 16-JAN-26 22LY TITLE DE NOVO DESIGNED S-LOCUS PROTEIN 11 (SP11)-LIKE PROTEIN (P212121 FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DE NOVO DESIGNED SP11-LIKE PROTEIN; COMPND 3 CHAIN: A, C, B, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS S-LOCUS PROTEIN 11, POLLEN DETERMINANT, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.MIYOSHI,K.SAKUMA,Y.MORIWAKI,S.FUSHINOBU REVDAT 1 05-AUG-26 22LY 0 JRNL AUTH H.MIYOSHI,K.SAKUMA,Y.MORIWAKI,N.AOYAMA,T.KASHIMA,T.TERADA, JRNL AUTH 2 A.MIYANAGA,S.FUSHINOBU JRNL TITL STRUCTURAL AND STABILITY ANALYSIS OF DE NOVO DESIGNED JRNL TITL 2 PROTEINS INCORPORATING A PLANT SELF-INCOMPATIBILITY MOTIF. JRNL REF PROTEINS 2026 JRNL REFN ESSN 1097-0134 JRNL PMID 42499170 JRNL DOI 10.1002/PROT.70162 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0431 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2321 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3238 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4354 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.60000 REMARK 3 B22 (A**2) : 2.21000 REMARK 3 B33 (A**2) : -1.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4447 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4450 ; 0.000 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6074 ; 1.682 ; 1.873 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10197 ; 0.573 ; 1.750 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 575 ; 5.908 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;14.054 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 709 ;17.489 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 755 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5360 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 916 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2315 ; 5.288 ; 5.477 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2315 ; 5.287 ; 5.477 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2885 ; 7.266 ; 9.804 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2886 ; 7.265 ; 9.804 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2132 ; 6.753 ; 6.330 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2131 ; 6.753 ; 6.331 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3189 ; 9.939 ;11.253 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4613 ;11.776 ;60.040 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4574 ;11.798 ;59.340 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 22LY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JAN-26. REMARK 100 THE DEPOSITION ID IS D_1300068686. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46962 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 48.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 27.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5M DI-AMMONIUM TARTRATE, 17.5% (W/V) REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.11700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.10500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.41400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.10500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.11700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.41400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 ARG A 19 REMARK 465 ARG A 20 REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 465 HIS A 150 REMARK 465 HIS A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 MET C 1 REMARK 465 HIS C 150 REMARK 465 HIS C 151 REMARK 465 HIS C 152 REMARK 465 HIS C 153 REMARK 465 HIS B 148 REMARK 465 HIS B 149 REMARK 465 HIS B 150 REMARK 465 HIS B 151 REMARK 465 HIS B 152 REMARK 465 HIS B 153 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 GLU D 147 REMARK 465 HIS D 148 REMARK 465 HIS D 149 REMARK 465 HIS D 150 REMARK 465 HIS D 151 REMARK 465 HIS D 152 REMARK 465 HIS D 153 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 LEU A 146 CG CD1 CD2 REMARK 470 GLU D 104 CG CD OE1 OE2 REMARK 470 ARG D 132 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 137 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 333 O HOH A 335 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 29 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 143 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG C 29 CD - NE - CZ ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG C 29 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 LEU C 113 CB - CG - CD1 ANGL. DEV. = -10.8 DEGREES REMARK 500 ARG C 143 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG C 143 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG B 29 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 132 CD - NE - CZ ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG B 132 NE - CZ - NH1 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG B 132 NE - CZ - NH2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG D 29 CD - NE - CZ ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG D 29 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG D 29 NE - CZ - NH2 ANGL. DEV. = -8.7 DEGREES REMARK 500 LEU D 116 CB - CG - CD2 ANGL. DEV. = -11.8 DEGREES REMARK 500 ARG D 143 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 87.13 -153.48 REMARK 500 PHE A 74 -118.18 -142.35 REMARK 500 ASP A 107 74.15 -152.44 REMARK 500 ASP C 39 87.57 -153.25 REMARK 500 PHE C 74 117.08 163.65 REMARK 500 ARG C 75 -30.29 93.38 REMARK 500 ASP C 107 74.68 -153.21 REMARK 500 ASP B 39 86.97 -153.06 REMARK 500 SER B 72 53.37 -140.31 REMARK 500 PHE B 74 -123.90 -132.02 REMARK 500 ASP B 107 75.95 -152.13 REMARK 500 ASP D 39 87.97 -154.80 REMARK 500 ARG D 75 -59.48 71.67 REMARK 500 ASP D 107 72.77 -152.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 26 0.10 SIDE CHAIN REMARK 500 ARG A 29 0.08 SIDE CHAIN REMARK 500 ARG A 143 0.10 SIDE CHAIN REMARK 500 ARG C 20 0.12 SIDE CHAIN REMARK 500 ARG C 26 0.09 SIDE CHAIN REMARK 500 ARG C 75 0.09 SIDE CHAIN REMARK 500 ARG B 20 0.12 SIDE CHAIN REMARK 500 ARG B 26 0.09 SIDE CHAIN REMARK 500 ARG B 34 0.11 SIDE CHAIN REMARK 500 ARG B 132 0.15 SIDE CHAIN REMARK 500 ARG D 7 0.08 SIDE CHAIN REMARK 500 ARG D 26 0.09 SIDE CHAIN REMARK 500 ARG D 29 0.20 SIDE CHAIN REMARK 500 ARG D 111 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 22LY A 1 153 PDB 22LY 22LY 1 153 DBREF 22LY C 1 153 PDB 22LY 22LY 1 153 DBREF 22LY B 1 153 PDB 22LY 22LY 1 153 DBREF 22LY D 1 153 PDB 22LY 22LY 1 153 SEQRES 1 A 153 MET GLU ARG VAL GLU VAL ARG VAL VAL LEU PRO ALA PRO SEQRES 2 A 153 ASP PRO GLU ALA ALA ARG ARG PRO GLU GLU ALA ARG ARG SEQRES 3 A 153 LEU ALA ARG GLU ALA ALA GLU ARG ALA LEU ALA ALA ASP SEQRES 4 A 153 PRO GLU ASP GLU ALA ALA GLN LYS VAL LEU LYS ALA LEU SEQRES 5 A 153 SER GLY GLU LEU ALA ARG GLU LEU GLY VAL PRO VAL VAL SEQRES 6 A 153 LEU ILE ALA HIS LEU THR SER PRO PHE ARG THR LEU HIS SEQRES 7 A 153 VAL THR LEU THR VAL LEU VAL GLY GLU ASP PRO ALA GLU SEQRES 8 A 153 LEU LEU ALA ALA THR ARG ALA GLU VAL ALA ALA LEU GLU SEQRES 9 A 153 ALA ALA ASP PRO GLU GLY ARG VAL LEU VAL TYR LEU SER SEQRES 10 A 153 ASP PRO ASP PRO ALA VAL VAL GLU ARG LEU ALA ALA GLU SEQRES 11 A 153 LEU ARG ALA ALA THR ARG ARG ALA GLU VAL VAL ALA ARG SEQRES 12 A 153 VAL ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 153 MET GLU ARG VAL GLU VAL ARG VAL VAL LEU PRO ALA PRO SEQRES 2 C 153 ASP PRO GLU ALA ALA ARG ARG PRO GLU GLU ALA ARG ARG SEQRES 3 C 153 LEU ALA ARG GLU ALA ALA GLU ARG ALA LEU ALA ALA ASP SEQRES 4 C 153 PRO GLU ASP GLU ALA ALA GLN LYS VAL LEU LYS ALA LEU SEQRES 5 C 153 SER GLY GLU LEU ALA ARG GLU LEU GLY VAL PRO VAL VAL SEQRES 6 C 153 LEU ILE ALA HIS LEU THR SER PRO PHE ARG THR LEU HIS SEQRES 7 C 153 VAL THR LEU THR VAL LEU VAL GLY GLU ASP PRO ALA GLU SEQRES 8 C 153 LEU LEU ALA ALA THR ARG ALA GLU VAL ALA ALA LEU GLU SEQRES 9 C 153 ALA ALA ASP PRO GLU GLY ARG VAL LEU VAL TYR LEU SER SEQRES 10 C 153 ASP PRO ASP PRO ALA VAL VAL GLU ARG LEU ALA ALA GLU SEQRES 11 C 153 LEU ARG ALA ALA THR ARG ARG ALA GLU VAL VAL ALA ARG SEQRES 12 C 153 VAL ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 153 MET GLU ARG VAL GLU VAL ARG VAL VAL LEU PRO ALA PRO SEQRES 2 B 153 ASP PRO GLU ALA ALA ARG ARG PRO GLU GLU ALA ARG ARG SEQRES 3 B 153 LEU ALA ARG GLU ALA ALA GLU ARG ALA LEU ALA ALA ASP SEQRES 4 B 153 PRO GLU ASP GLU ALA ALA GLN LYS VAL LEU LYS ALA LEU SEQRES 5 B 153 SER GLY GLU LEU ALA ARG GLU LEU GLY VAL PRO VAL VAL SEQRES 6 B 153 LEU ILE ALA HIS LEU THR SER PRO PHE ARG THR LEU HIS SEQRES 7 B 153 VAL THR LEU THR VAL LEU VAL GLY GLU ASP PRO ALA GLU SEQRES 8 B 153 LEU LEU ALA ALA THR ARG ALA GLU VAL ALA ALA LEU GLU SEQRES 9 B 153 ALA ALA ASP PRO GLU GLY ARG VAL LEU VAL TYR LEU SER SEQRES 10 B 153 ASP PRO ASP PRO ALA VAL VAL GLU ARG LEU ALA ALA GLU SEQRES 11 B 153 LEU ARG ALA ALA THR ARG ARG ALA GLU VAL VAL ALA ARG SEQRES 12 B 153 VAL ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 153 MET GLU ARG VAL GLU VAL ARG VAL VAL LEU PRO ALA PRO SEQRES 2 D 153 ASP PRO GLU ALA ALA ARG ARG PRO GLU GLU ALA ARG ARG SEQRES 3 D 153 LEU ALA ARG GLU ALA ALA GLU ARG ALA LEU ALA ALA ASP SEQRES 4 D 153 PRO GLU ASP GLU ALA ALA GLN LYS VAL LEU LYS ALA LEU SEQRES 5 D 153 SER GLY GLU LEU ALA ARG GLU LEU GLY VAL PRO VAL VAL SEQRES 6 D 153 LEU ILE ALA HIS LEU THR SER PRO PHE ARG THR LEU HIS SEQRES 7 D 153 VAL THR LEU THR VAL LEU VAL GLY GLU ASP PRO ALA GLU SEQRES 8 D 153 LEU LEU ALA ALA THR ARG ALA GLU VAL ALA ALA LEU GLU SEQRES 9 D 153 ALA ALA ASP PRO GLU GLY ARG VAL LEU VAL TYR LEU SER SEQRES 10 D 153 ASP PRO ASP PRO ALA VAL VAL GLU ARG LEU ALA ALA GLU SEQRES 11 D 153 LEU ARG ALA ALA THR ARG ARG ALA GLU VAL VAL ALA ARG SEQRES 12 D 153 VAL ALA LEU GLU HIS HIS HIS HIS HIS HIS HET TLA A 201 10 HET TLA C 201 10 HET TLA B 201 10 HET TLA D 201 10 HETNAM TLA L(+)-TARTARIC ACID FORMUL 5 TLA 4(C4 H6 O6) FORMUL 9 HOH *216(H2 O) HELIX 1 AA1 GLU A 22 ASP A 39 1 18 HELIX 2 AA2 ASP A 42 GLY A 54 1 13 HELIX 3 AA3 GLY A 54 GLY A 61 1 8 HELIX 4 AA4 ASP A 88 ASP A 107 1 20 HELIX 5 AA5 ASP A 120 THR A 135 1 16 HELIX 6 AA6 GLU C 22 ASP C 39 1 18 HELIX 7 AA7 ASP C 42 GLY C 54 1 13 HELIX 8 AA8 GLY C 54 GLY C 61 1 8 HELIX 9 AA9 ASP C 88 ASP C 107 1 20 HELIX 10 AB1 ASP C 120 THR C 135 1 16 HELIX 11 AB2 GLU B 22 ASP B 39 1 18 HELIX 12 AB3 ASP B 42 GLY B 54 1 13 HELIX 13 AB4 GLY B 54 GLY B 61 1 8 HELIX 14 AB5 ASP B 88 ASP B 107 1 20 HELIX 15 AB6 ASP B 120 THR B 135 1 16 HELIX 16 AB7 ASP D 14 ARG D 19 1 6 HELIX 17 AB8 GLU D 22 ASP D 39 1 18 HELIX 18 AB9 ASP D 42 GLY D 54 1 13 HELIX 19 AC1 GLY D 54 GLY D 61 1 8 HELIX 20 AC2 ASP D 88 ASP D 107 1 20 HELIX 21 AC3 ASP D 120 THR D 135 1 16 SHEET 1 AA1 5 ARG A 3 PRO A 11 0 SHEET 2 AA1 5 THR A 76 VAL A 85 -1 O VAL A 79 N VAL A 8 SHEET 3 AA1 5 VAL A 64 THR A 71 -1 N THR A 71 O HIS A 78 SHEET 4 AA1 5 ARG A 111 SER A 117 -1 O TYR A 115 N LEU A 66 SHEET 5 AA1 5 GLU A 139 VAL A 141 1 O VAL A 141 N VAL A 114 SHEET 1 AA210 ARG C 3 PRO C 11 0 SHEET 2 AA210 THR C 76 VAL C 85 -1 O VAL C 79 N VAL C 8 SHEET 3 AA210 VAL C 64 THR C 71 -1 N THR C 71 O HIS C 78 SHEET 4 AA210 ARG C 111 SER C 117 -1 O TYR C 115 N LEU C 66 SHEET 5 AA210 GLU C 139 ALA C 145 1 O VAL C 141 N VAL C 114 SHEET 6 AA210 GLU B 139 ALA B 145 -1 O ALA B 142 N VAL C 144 SHEET 7 AA210 ARG B 111 SER B 117 1 N VAL B 114 O VAL B 141 SHEET 8 AA210 VAL B 64 THR B 71 -1 N LEU B 66 O TYR B 115 SHEET 9 AA210 THR B 76 VAL B 85 -1 O HIS B 78 N THR B 71 SHEET 10 AA210 GLU B 2 PRO B 11 -1 N VAL B 8 O VAL B 79 SHEET 1 AA3 5 VAL D 4 PRO D 11 0 SHEET 2 AA3 5 THR D 76 VAL D 85 -1 O VAL D 79 N VAL D 8 SHEET 3 AA3 5 VAL D 64 LEU D 70 -1 N ILE D 67 O THR D 82 SHEET 4 AA3 5 ARG D 111 SER D 117 -1 O LEU D 113 N ALA D 68 SHEET 5 AA3 5 GLU D 139 VAL D 141 1 O VAL D 141 N VAL D 114 CRYST1 80.234 82.828 118.210 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012464 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008460 0.00000 CONECT 4359 4361 CONECT 4360 4361 CONECT 4361 4359 4360 4362 CONECT 4362 4361 4363 4364 CONECT 4363 4362 CONECT 4364 4362 4365 4366 CONECT 4365 4364 CONECT 4366 4364 4367 4368 CONECT 4367 4366 CONECT 4368 4366 CONECT 4369 4371 CONECT 4370 4371 CONECT 4371 4369 4370 4372 CONECT 4372 4371 4373 4374 CONECT 4373 4372 CONECT 4374 4372 4375 4376 CONECT 4375 4374 CONECT 4376 4374 4377 4378 CONECT 4377 4376 CONECT 4378 4376 CONECT 4379 4381 CONECT 4380 4381 CONECT 4381 4379 4380 4382 CONECT 4382 4381 4383 4384 CONECT 4383 4382 CONECT 4384 4382 4385 4386 CONECT 4385 4384 CONECT 4386 4384 4387 4388 CONECT 4387 4386 CONECT 4388 4386 CONECT 4389 4391 CONECT 4390 4391 CONECT 4391 4389 4390 4392 CONECT 4392 4391 4393 4394 CONECT 4393 4392 CONECT 4394 4392 4395 4396 CONECT 4395 4394 CONECT 4396 4394 4397 4398 CONECT 4397 4396 CONECT 4398 4396 MASTER 409 0 4 21 20 0 0 6 4610 4 40 48 END