data_22AG # _entry.id 22AG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.414 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 22AG pdb_000022ag 10.2210/pdb22ag/pdb WWPDB D_1300065598 ? ? EMDB EMD-68132 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-06-24 ? 2 'EM metadata' 1 0 2026-06-24 ? 3 'Half map' 1 0 2026-06-24 1 4 'Half map' 1 0 2026-06-24 2 5 Image 1 0 2026-06-24 ? 6 'Primary map' 1 0 2026-06-24 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Half map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 Image repository 'Initial release' ? ? 6 6 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 22AG _pdbx_database_status.recvd_initial_deposition_date 2026-01-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of TLP-0' _pdbx_database_related.db_id EMD-68132 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email nyan@tsinghua.edu.cn _pdbx_contact_author.name_first Nieng _pdbx_contact_author.name_last Yan _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4829-7416 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yan, N.' 1 ? 'Li, Z.' 2 ? 'Wang, T.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Chem Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2451-9456 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 33 _citation.language ? _citation.page_first 699 _citation.page_last 710.e2 _citation.title 'CryoSeek identification of glycofibrils with diverse compositions and structural assemblies.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2026.03.008 _citation.pdbx_database_id_PubMed 42013841 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, Z.' 1 ? primary 'Wang, T.' 2 ? primary 'Sun, Y.' 3 ? primary 'Xu, K.' 4 ? primary 'Huang, W.' 5 ? primary 'Zhang, Q.C.' 6 ? primary 'Yan, C.' 7 ? primary 'Hu, M.' 8 ? primary 'Yan, N.' 9 ? # _entity.id 1 _entity.type branched _entity.src_method man _entity.pdbx_description ;beta-L-arabinofuranose-(1-2)-[alpha-D-glucopyranose-(1-3)][2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-[alpha-D-glucopyranose-(1-3)]beta-D-mannopyranose-(1-2)-[beta-L-xylopyranose-(1-3)-alpha-L-arabinofuranose-(1-3)-[beta-L-arabinofuranose-(1-2)]beta-D-glucopyranose-(1-4)][alpha-D-mannopyranose-(1-3)-[beta-D-glucopyranose-(1-4)]alpha-D-galactopyranose-(1-3)]alpha-D-mannopyranose-(1-4)-[beta-D-xylopyranose-(1-4)-alpha-L-fucopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)][alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-2)]alpha-D-mannopyranose ; _entity.formula_weight 3338.946 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _pdbx_entity_branch.entity_id 1 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 1 ;LArafb1-2[DGlcpa1-3][DGlcpNAcb1-4]DGlcpb1-4DGlcpb1-4[DGlcpa1-3]DManpb1-2[LXylpb1-3LArafa1-3[LArafb1-2]DGlcpb1-4][DManpa1-3[DGlcpb1-4]DGalpa1-3]DManpa1-4[DXylpb1-4LFucpa1-3DGalpNAca1-3][DManpa1-3DManpa1-2]DManpa1-ROH ; 'Glycam Condensed Sequence' GMML 1.0 2 1 ;WURCS=2.0/12,21,20/[a1122h-1a_1-5][a2112h-1a_1-5_2*NCC/3=O][a1221m-1a_1-5][a212h-1b_1-5][a1122h-1b_1-5][a2122h-1a_1-5][a2122h-1b_1-5][a211h-1b_1-4][a2122h-1b_1-5_2*NCC/3=O][a2112h-1a_1-5][a211h-1a_1-4][a121h-1b_1-5]/1-1-1-2-3-4-1-5-6-7-7-8-6-9-10-1-7-7-8-11-12/a2-b1_a3-d1_a4-g1_b3-c1_d3-e1_e4-f1_g2-h1_g3-o1_g4-r1_h3-i1_h4-j1_j4-k1_k2-l1_k3-m1_k4-n1_o3-p1_o4-q1_r2-s1_r3-t1_t3-u1 ; WURCS PDB2Glycan 1.1.0 3 1 ;[][D-1-deoxy-Manp]{[(2+1)][a-D-Manp]{[(3+1)][a-D-Manp]{}}[(3+1)][a-D-GalpNAc]{[(3+1)][a-L-Fucp]{[(4+1)][b-D-Xylp]{}}}[(4+1)][a-D-Manp]{[(2+1)][b-D-Manp]{[(3+1)][a-D-Glcp]{}[(4+1)][b-D-Glcp]{[(4+1)][b-D-Glcp]{[(2+1)][b-L-Araf]{}[(3+1)][a-D-Glcp]{}[(4+1)][b-D-GlcpNAc]{}}}}[(3+1)][a-D-Galp]{[(3+1)][a-D-Manp]{}[(4+1)][b-D-Glcp]{}}[(4+1)][b-D-Glcp]{[(2+1)][b-L-Araf]{}[(3+1)][a-L-Araf]{[(3+1)][b-L-Xylp]{}}}}} ; LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 1 2 MAN C1 O1 1 MAN O4 HO4 sing ? 2 1 3 BMA C1 O1 2 MAN O2 HO2 sing ? 3 1 4 BGC C1 O1 3 BMA O4 HO4 sing ? 4 1 5 BGC C1 O1 4 BGC O4 HO4 sing ? 5 1 6 FUB C1 O1 5 BGC O2 HO2 sing ? 6 1 7 GLC C1 O1 5 BGC O3 HO3 sing ? 7 1 8 NAG C1 O1 5 BGC O4 HO4 sing ? 8 1 9 GLC C1 O1 3 BMA O3 HO3 sing ? 9 1 10 BGC C1 O1 2 MAN O4 HO4 sing ? 10 1 11 AHR C1 O1 10 BGC O3 HO3 sing ? 11 1 12 LXC C1 O1 11 AHR O3 HO3 sing ? 12 1 13 FUB C1 O1 10 BGC O2 HO2 sing ? 13 1 14 GLA C1 O1 2 MAN O3 HO3 sing ? 14 1 15 MAN C1 O1 14 GLA O3 HO3 sing ? 15 1 16 BGC C1 O1 14 GLA O4 HO4 sing ? 16 1 17 A2G C1 O1 1 MAN O3 HO3 sing ? 17 1 18 FUC C1 O1 17 A2G O3 HO3 sing ? 18 1 19 XYP C1 O1 18 FUC O4 HO4 sing ? 19 1 20 MAN C1 O1 1 MAN O2 HO2 sing ? 20 1 21 MAN C1 O1 20 MAN O3 HO3 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A2G 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-galactopyranose ;N-acetyl-alpha-D-galactosamine; 2-acetamido-2-deoxy-alpha-D-galactose; 2-acetamido-2-deoxy-D-galactose; 2-acetamido-2-deoxy-galactose; N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE ; 'C8 H15 N O6' 221.208 AHR 'L-saccharide, alpha linking' . alpha-L-arabinofuranose 'alpha-L-arabinose; L-arabinose; arabinose' 'C5 H10 O5' 150.130 BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 FUB 'L-saccharide, beta linking' . beta-L-arabinofuranose 'beta-L-arabinose; L-arabinose; arabinose' 'C5 H10 O5' 150.130 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GLA 'D-saccharide, alpha linking' . alpha-D-galactopyranose 'alpha-D-galactose; D-galactose; galactose; ALPHA D-GALACTOSE' 'C6 H12 O6' 180.156 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose 'alpha-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 LXC 'L-saccharide, beta linking' . beta-L-xylopyranose 'beta-L-xylose; L-xylose; xylose; L-XYLOSE (CYCLIC FORM)' 'C5 H10 O5' 150.130 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 XYP 'D-saccharide, beta linking' . beta-D-xylopyranose 'beta-D-xylose; D-xylose; xylose' 'C5 H10 O5' 150.130 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A2G 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAca A2G 'COMMON NAME' GMML 1.0 N-acetyl-a-D-galactopyranosamine A2G 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GalpNAc A2G 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc AHR 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LArafa AHR 'COMMON NAME' GMML 1.0 a-L-arabinofuranose AHR 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Araf AHR 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Ara BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man FUB 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LArafb FUB 'COMMON NAME' GMML 1.0 b-L-arabinofuranose FUB 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-L-Araf FUB 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Ara FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc GLA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpa GLA 'COMMON NAME' GMML 1.0 a-D-galactopyranose GLA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Galp GLA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc LXC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LXylpb LXC 'COMMON NAME' GMML 1.0 b-L-xylopyranose LXC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-L-Xylp LXC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Xyl MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc XYP 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DXylpb XYP 'COMMON NAME' GMML 1.0 b-D-xylopyranose XYP 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Xylp XYP 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Xyl # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero A 1 MAN 1 A MAN 1 A MAN 1 n A 1 MAN 2 A MAN 2 A MAN 7 n A 1 BMA 3 A BMA 3 A BMA 15 n A 1 BGC 4 A BGC 4 A BGC 17 n A 1 BGC 5 A BGC 5 A BGC 18 n A 1 FUB 6 A FUB 6 A FUB 19 n A 1 GLC 7 A GLC 7 A GLC 21 n A 1 NAG 8 A NAG 8 A NAG 20 n A 1 GLC 9 A GLC 9 A GLC 16 n A 1 BGC 10 A BGC 10 A BGC 8 n A 1 AHR 11 A AHR 11 A AHR 10 n A 1 LXC 12 A LXC 12 A LXC 11 n A 1 FUB 13 A FUB 13 A FUB 9 n A 1 GLA 14 A GLA 14 A GLA 12 n A 1 MAN 15 A MAN 15 A MAN 14 n A 1 BGC 16 A BGC 16 A BGC 13 n A 1 A2G 17 A A2G 17 A A2G 2 n A 1 FUC 18 A FUC 18 A FUC 3 n A 1 XYP 19 A XYP 19 A XYP 4 n A 1 MAN 20 A MAN 20 A MAN 5 n A 1 MAN 21 A MAN 21 A MAN 6 n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 MAN ? ? MAN ? ? 'SUBJECT OF INVESTIGATION' ? 2 FUC ? ? FUC ? ? 'SUBJECT OF INVESTIGATION' ? 3 NAG ? ? NAG ? ? 'SUBJECT OF INVESTIGATION' ? # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag N _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id MAN _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id O1 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id MAN _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id O1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 22AG _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 22AG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 22AG _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 22AG _struct.title 'Cryo-EM structure of TLP-0' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 22AG _struct_keywords.text 'Glycofibril, CARBOHYDRATE' _struct_keywords.pdbx_keywords CARBOHYDRATE # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details ? _pdbx_struct_assembly.oligomeric_count 0 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MAN . O4 ? ? ? 1_555 A MAN . C1 ? ? A MAN 1 A MAN 2 1_555 ? ? ? ? ? ? ? 1.407 ? ? covale2 covale both ? A MAN . O3 ? ? ? 1_555 A A2G . C1 ? ? A MAN 1 A A2G 17 1_555 ? ? ? ? ? ? ? 1.414 ? ? covale3 covale both ? A MAN . O2 ? ? ? 1_555 A MAN . C1 ? ? A MAN 1 A MAN 20 1_555 ? ? ? ? ? ? ? 1.436 ? ? covale4 covale both ? A MAN . O2 ? ? ? 1_555 A BMA . C1 ? ? A MAN 2 A BMA 3 1_555 ? ? ? ? ? ? ? 1.377 ? ? covale5 covale both ? A MAN . O4 ? ? ? 1_555 A BGC . C1 ? ? A MAN 2 A BGC 10 1_555 ? ? ? ? ? ? ? 1.407 ? ? covale6 covale both ? A MAN . O3 ? ? ? 1_555 A GLA . C1 ? ? A MAN 2 A GLA 14 1_555 ? ? ? ? ? ? ? 1.446 ? ? covale7 covale both ? A BMA . O4 ? ? ? 1_555 A BGC . C1 ? ? A BMA 3 A BGC 4 1_555 ? ? ? ? ? ? ? 1.389 ? ? covale8 covale both ? A BMA . O3 ? ? ? 1_555 A GLC . C1 ? ? A BMA 3 A GLC 9 1_555 ? ? ? ? ? ? ? 1.413 ? ? covale9 covale both ? A BGC . O4 ? ? ? 1_555 A BGC . C1 ? ? A BGC 4 A BGC 5 1_555 ? ? ? ? ? ? ? 1.419 ? ? covale10 covale both ? A BGC . O2 ? ? ? 1_555 A FUB . C1 ? ? A BGC 5 A FUB 6 1_555 ? ? ? ? ? ? ? 1.414 ? ? covale11 covale both ? A BGC . O3 ? ? ? 1_555 A GLC . C1 ? ? A BGC 5 A GLC 7 1_555 ? ? ? ? ? ? ? 1.422 ? ? covale12 covale both ? A BGC . O4 ? ? ? 1_555 A NAG . C1 ? ? A BGC 5 A NAG 8 1_555 ? ? ? ? ? ? ? 1.391 ? ? covale13 covale both ? A BGC . O3 ? ? ? 1_555 A AHR . C1 ? ? A BGC 10 A AHR 11 1_555 ? ? ? ? ? ? ? 1.403 ? ? covale14 covale both ? A BGC . O2 ? ? ? 1_555 A FUB . C1 ? ? A BGC 10 A FUB 13 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale15 covale both ? A AHR . O3 ? ? ? 1_555 A LXC . C1 ? ? A AHR 11 A LXC 12 1_555 ? ? ? ? ? ? ? 1.469 ? ? covale16 covale both ? A GLA . O3 ? ? ? 1_555 A MAN . C1 ? ? A GLA 14 A MAN 15 1_555 ? ? ? ? ? ? ? 1.404 ? ? covale17 covale both ? A GLA . O4 ? ? ? 1_555 A BGC . C1 ? ? A GLA 14 A BGC 16 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale18 covale both ? A A2G . O3 ? ? ? 1_555 A FUC . C1 ? ? A A2G 17 A FUC 18 1_555 ? ? ? ? ? ? ? 1.402 ? ? covale19 covale both ? A FUC . O4 ? ? ? 1_555 A XYP . C1 ? ? A FUC 18 A XYP 19 1_555 ? ? ? ? ? ? ? 1.422 ? ? covale20 covale both ? A MAN . O3 ? ? ? 1_555 A MAN . C1 ? ? A MAN 20 A MAN 21 1_555 ? ? ? ? ? ? ? 1.405 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 22AG _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 22AG _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 22AG _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.10 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 35270 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name TLP-0 _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list ? # _em_imaging.entry_id 22AG _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1300 _em_imaging.nominal_defocus_max 1800 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 22AG _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 22AG _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A2G O5 O N N 1 A2G C1 C N S 2 A2G O1 O N N 3 A2G C2 C N R 4 A2G N2 N N N 5 A2G C3 C N R 6 A2G O3 O N N 7 A2G C4 C N R 8 A2G O4 O N N 9 A2G C5 C N R 10 A2G C6 C N N 11 A2G O6 O N N 12 A2G C7 C N N 13 A2G O7 O N N 14 A2G C8 C N N 15 A2G H1 H N N 16 A2G HO1 H N N 17 A2G H2 H N N 18 A2G HN2 H N N 19 A2G H3 H N N 20 A2G HO3 H N N 21 A2G H4 H N N 22 A2G HO4 H N N 23 A2G H5 H N N 24 A2G H61 H N N 25 A2G H81 H N N 26 A2G H82 H N N 27 A2G H83 H N N 28 A2G H62 H N N 29 A2G HO6 H N N 30 AHR O5 O N N 31 AHR C5 C N N 32 AHR C4 C N S 33 AHR O4 O N N 34 AHR C3 C N R 35 AHR O3 O N N 36 AHR C2 C N R 37 AHR O2 O N N 38 AHR C1 C N R 39 AHR O1 O N N 40 AHR HO5 H N N 41 AHR H51 H N N 42 AHR H52 H N N 43 AHR H4 H N N 44 AHR H3 H N N 45 AHR HO3 H N N 46 AHR H2 H N N 47 AHR HO2 H N N 48 AHR H1 H N N 49 AHR HO1 H N N 50 BGC C2 C N R 51 BGC C3 C N S 52 BGC C4 C N S 53 BGC C5 C N R 54 BGC C6 C N N 55 BGC C1 C N R 56 BGC O1 O N N 57 BGC O2 O N N 58 BGC O3 O N N 59 BGC O4 O N N 60 BGC O5 O N N 61 BGC O6 O N N 62 BGC H2 H N N 63 BGC H3 H N N 64 BGC H4 H N N 65 BGC H5 H N N 66 BGC H61 H N N 67 BGC H62 H N N 68 BGC H1 H N N 69 BGC HO1 H N N 70 BGC HO2 H N N 71 BGC HO3 H N N 72 BGC HO4 H N N 73 BGC HO6 H N N 74 BMA C1 C N R 75 BMA C2 C N S 76 BMA C3 C N S 77 BMA C4 C N S 78 BMA C5 C N R 79 BMA C6 C N N 80 BMA O1 O N N 81 BMA O2 O N N 82 BMA O3 O N N 83 BMA O4 O N N 84 BMA O5 O N N 85 BMA O6 O N N 86 BMA H1 H N N 87 BMA H2 H N N 88 BMA H3 H N N 89 BMA H4 H N N 90 BMA H5 H N N 91 BMA H61 H N N 92 BMA H62 H N N 93 BMA HO1 H N N 94 BMA HO2 H N N 95 BMA HO3 H N N 96 BMA HO4 H N N 97 BMA HO6 H N N 98 FUB O5 O N N 99 FUB C5 C N N 100 FUB C4 C N S 101 FUB O4 O N N 102 FUB C3 C N R 103 FUB O3 O N N 104 FUB C2 C N R 105 FUB O2 O N N 106 FUB C1 C N S 107 FUB O1 O N N 108 FUB HO5 H N N 109 FUB H51 H N N 110 FUB H52 H N N 111 FUB H4 H N N 112 FUB H3 H N N 113 FUB HO3 H N N 114 FUB H2 H N N 115 FUB HO2 H N N 116 FUB H1 H N N 117 FUB HO1 H N N 118 FUC C1 C N R 119 FUC C2 C N S 120 FUC C3 C N R 121 FUC C4 C N S 122 FUC C5 C N S 123 FUC C6 C N N 124 FUC O1 O N N 125 FUC O2 O N N 126 FUC O3 O N N 127 FUC O4 O N N 128 FUC O5 O N N 129 FUC H1 H N N 130 FUC H2 H N N 131 FUC H3 H N N 132 FUC H4 H N N 133 FUC H5 H N N 134 FUC H61 H N N 135 FUC H62 H N N 136 FUC H63 H N N 137 FUC HO1 H N N 138 FUC HO2 H N N 139 FUC HO3 H N N 140 FUC HO4 H N N 141 GLA C1 C N S 142 GLA C2 C N R 143 GLA C3 C N S 144 GLA C4 C N R 145 GLA C5 C N R 146 GLA C6 C N N 147 GLA O1 O N N 148 GLA O2 O N N 149 GLA O3 O N N 150 GLA O4 O N N 151 GLA O5 O N N 152 GLA O6 O N N 153 GLA H1 H N N 154 GLA H2 H N N 155 GLA H3 H N N 156 GLA H4 H N N 157 GLA H5 H N N 158 GLA H61 H N N 159 GLA H62 H N N 160 GLA HO1 H N N 161 GLA HO2 H N N 162 GLA HO3 H N N 163 GLA HO4 H N N 164 GLA HO6 H N N 165 GLC C1 C N S 166 GLC C2 C N R 167 GLC C3 C N S 168 GLC C4 C N S 169 GLC C5 C N R 170 GLC C6 C N N 171 GLC O1 O N N 172 GLC O2 O N N 173 GLC O3 O N N 174 GLC O4 O N N 175 GLC O5 O N N 176 GLC O6 O N N 177 GLC H1 H N N 178 GLC H2 H N N 179 GLC H3 H N N 180 GLC H4 H N N 181 GLC H5 H N N 182 GLC H61 H N N 183 GLC H62 H N N 184 GLC HO1 H N N 185 GLC HO2 H N N 186 GLC HO3 H N N 187 GLC HO4 H N N 188 GLC HO6 H N N 189 LXC C5 C N N 190 LXC O5 O N N 191 LXC C1 C N S 192 LXC O1 O N N 193 LXC C2 C N S 194 LXC O2 O N N 195 LXC C3 C N R 196 LXC O3 O N N 197 LXC C4 C N S 198 LXC O4 O N N 199 LXC H51 H N N 200 LXC H52 H N N 201 LXC H1 H N N 202 LXC HO1 H N N 203 LXC H2 H N N 204 LXC HO2 H N N 205 LXC H3 H N N 206 LXC HO3 H N N 207 LXC H4 H N N 208 LXC HO4 H N N 209 MAN C1 C N S 210 MAN C2 C N S 211 MAN C3 C N S 212 MAN C4 C N S 213 MAN C5 C N R 214 MAN C6 C N N 215 MAN O1 O N N 216 MAN O2 O N N 217 MAN O3 O N N 218 MAN O4 O N N 219 MAN O5 O N N 220 MAN O6 O N N 221 MAN H1 H N N 222 MAN H2 H N N 223 MAN H3 H N N 224 MAN H4 H N N 225 MAN H5 H N N 226 MAN H61 H N N 227 MAN H62 H N N 228 MAN HO1 H N N 229 MAN HO2 H N N 230 MAN HO3 H N N 231 MAN HO4 H N N 232 MAN HO6 H N N 233 NAG C1 C N R 234 NAG C2 C N R 235 NAG C3 C N R 236 NAG C4 C N S 237 NAG C5 C N R 238 NAG C6 C N N 239 NAG C7 C N N 240 NAG C8 C N N 241 NAG N2 N N N 242 NAG O1 O N N 243 NAG O3 O N N 244 NAG O4 O N N 245 NAG O5 O N N 246 NAG O6 O N N 247 NAG O7 O N N 248 NAG H1 H N N 249 NAG H2 H N N 250 NAG H3 H N N 251 NAG H4 H N N 252 NAG H5 H N N 253 NAG H61 H N N 254 NAG H62 H N N 255 NAG H81 H N N 256 NAG H82 H N N 257 NAG H83 H N N 258 NAG HN2 H N N 259 NAG HO1 H N N 260 NAG HO3 H N N 261 NAG HO4 H N N 262 NAG HO6 H N N 263 XYP O1 O N N 264 XYP C1 C N R 265 XYP C2 C N R 266 XYP C3 C N S 267 XYP C4 C N R 268 XYP C5 C N N 269 XYP O2 O N N 270 XYP O3 O N N 271 XYP O4 O N N 272 XYP O5 O N N 273 XYP HO1 H N N 274 XYP H1 H N N 275 XYP H2 H N N 276 XYP H3 H N N 277 XYP H4 H N N 278 XYP H51 H N N 279 XYP H52 H N N 280 XYP HO2 H N N 281 XYP HO3 H N N 282 XYP HO4 H N N 283 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A2G O5 C5 sing N N 1 A2G C1 O5 sing N N 2 A2G C1 C2 sing N N 3 A2G C1 H1 sing N N 4 A2G O1 C1 sing N N 5 A2G O1 HO1 sing N N 6 A2G C2 C3 sing N N 7 A2G C2 H2 sing N N 8 A2G N2 C2 sing N N 9 A2G N2 HN2 sing N N 10 A2G C3 C4 sing N N 11 A2G C3 O3 sing N N 12 A2G C3 H3 sing N N 13 A2G O3 HO3 sing N N 14 A2G C4 O4 sing N N 15 A2G C4 H4 sing N N 16 A2G O4 HO4 sing N N 17 A2G C5 C4 sing N N 18 A2G C5 C6 sing N N 19 A2G C5 H5 sing N N 20 A2G C6 O6 sing N N 21 A2G C6 H61 sing N N 22 A2G C7 N2 sing N N 23 A2G O7 C7 doub N N 24 A2G C8 C7 sing N N 25 A2G C8 H81 sing N N 26 A2G C8 H82 sing N N 27 A2G C8 H83 sing N N 28 A2G C6 H62 sing N N 29 A2G O6 HO6 sing N N 30 AHR O5 C5 sing N N 31 AHR O5 HO5 sing N N 32 AHR C5 C4 sing N N 33 AHR C5 H51 sing N N 34 AHR C5 H52 sing N N 35 AHR C4 O4 sing N N 36 AHR C4 C3 sing N N 37 AHR C4 H4 sing N N 38 AHR O4 C1 sing N N 39 AHR C3 O3 sing N N 40 AHR C3 C2 sing N N 41 AHR C3 H3 sing N N 42 AHR O3 HO3 sing N N 43 AHR C2 O2 sing N N 44 AHR C2 C1 sing N N 45 AHR C2 H2 sing N N 46 AHR O2 HO2 sing N N 47 AHR C1 O1 sing N N 48 AHR C1 H1 sing N N 49 AHR O1 HO1 sing N N 50 BGC C2 C3 sing N N 51 BGC C2 C1 sing N N 52 BGC C2 O2 sing N N 53 BGC C2 H2 sing N N 54 BGC C3 C4 sing N N 55 BGC C3 O3 sing N N 56 BGC C3 H3 sing N N 57 BGC C4 C5 sing N N 58 BGC C4 O4 sing N N 59 BGC C4 H4 sing N N 60 BGC C5 C6 sing N N 61 BGC C5 O5 sing N N 62 BGC C5 H5 sing N N 63 BGC C6 O6 sing N N 64 BGC C6 H61 sing N N 65 BGC C6 H62 sing N N 66 BGC C1 O1 sing N N 67 BGC C1 O5 sing N N 68 BGC C1 H1 sing N N 69 BGC O1 HO1 sing N N 70 BGC O2 HO2 sing N N 71 BGC O3 HO3 sing N N 72 BGC O4 HO4 sing N N 73 BGC O6 HO6 sing N N 74 BMA C1 C2 sing N N 75 BMA C1 O1 sing N N 76 BMA C1 O5 sing N N 77 BMA C1 H1 sing N N 78 BMA C2 C3 sing N N 79 BMA C2 O2 sing N N 80 BMA C2 H2 sing N N 81 BMA C3 C4 sing N N 82 BMA C3 O3 sing N N 83 BMA C3 H3 sing N N 84 BMA C4 C5 sing N N 85 BMA C4 O4 sing N N 86 BMA C4 H4 sing N N 87 BMA C5 C6 sing N N 88 BMA C5 O5 sing N N 89 BMA C5 H5 sing N N 90 BMA C6 O6 sing N N 91 BMA C6 H61 sing N N 92 BMA C6 H62 sing N N 93 BMA O1 HO1 sing N N 94 BMA O2 HO2 sing N N 95 BMA O3 HO3 sing N N 96 BMA O4 HO4 sing N N 97 BMA O6 HO6 sing N N 98 FUB C5 O5 sing N N 99 FUB O5 HO5 sing N N 100 FUB C4 C5 sing N N 101 FUB C5 H51 sing N N 102 FUB C5 H52 sing N N 103 FUB C3 C4 sing N N 104 FUB C4 O4 sing N N 105 FUB C4 H4 sing N N 106 FUB C1 O4 sing N N 107 FUB O3 C3 sing N N 108 FUB C2 C3 sing N N 109 FUB C3 H3 sing N N 110 FUB O3 HO3 sing N N 111 FUB C2 O2 sing N N 112 FUB C2 C1 sing N N 113 FUB C2 H2 sing N N 114 FUB O2 HO2 sing N N 115 FUB C1 O1 sing N N 116 FUB C1 H1 sing N N 117 FUB O1 HO1 sing N N 118 FUC C1 C2 sing N N 119 FUC C1 O1 sing N N 120 FUC C1 O5 sing N N 121 FUC C1 H1 sing N N 122 FUC C2 C3 sing N N 123 FUC C2 O2 sing N N 124 FUC C2 H2 sing N N 125 FUC C3 C4 sing N N 126 FUC C3 O3 sing N N 127 FUC C3 H3 sing N N 128 FUC C4 C5 sing N N 129 FUC C4 O4 sing N N 130 FUC C4 H4 sing N N 131 FUC C5 C6 sing N N 132 FUC C5 O5 sing N N 133 FUC C5 H5 sing N N 134 FUC C6 H61 sing N N 135 FUC C6 H62 sing N N 136 FUC C6 H63 sing N N 137 FUC O1 HO1 sing N N 138 FUC O2 HO2 sing N N 139 FUC O3 HO3 sing N N 140 FUC O4 HO4 sing N N 141 GLA C1 C2 sing N N 142 GLA C1 O1 sing N N 143 GLA C1 O5 sing N N 144 GLA C1 H1 sing N N 145 GLA C2 C3 sing N N 146 GLA C2 O2 sing N N 147 GLA C2 H2 sing N N 148 GLA C3 C4 sing N N 149 GLA C3 O3 sing N N 150 GLA C3 H3 sing N N 151 GLA C4 C5 sing N N 152 GLA C4 O4 sing N N 153 GLA C4 H4 sing N N 154 GLA C5 C6 sing N N 155 GLA C5 O5 sing N N 156 GLA C5 H5 sing N N 157 GLA C6 O6 sing N N 158 GLA C6 H61 sing N N 159 GLA C6 H62 sing N N 160 GLA O1 HO1 sing N N 161 GLA O2 HO2 sing N N 162 GLA O3 HO3 sing N N 163 GLA O4 HO4 sing N N 164 GLA O6 HO6 sing N N 165 GLC C1 C2 sing N N 166 GLC C1 O1 sing N N 167 GLC C1 O5 sing N N 168 GLC C1 H1 sing N N 169 GLC C2 C3 sing N N 170 GLC C2 O2 sing N N 171 GLC C2 H2 sing N N 172 GLC C3 C4 sing N N 173 GLC C3 O3 sing N N 174 GLC C3 H3 sing N N 175 GLC C4 C5 sing N N 176 GLC C4 O4 sing N N 177 GLC C4 H4 sing N N 178 GLC C5 C6 sing N N 179 GLC C5 O5 sing N N 180 GLC C5 H5 sing N N 181 GLC C6 O6 sing N N 182 GLC C6 H61 sing N N 183 GLC C6 H62 sing N N 184 GLC O1 HO1 sing N N 185 GLC O2 HO2 sing N N 186 GLC O3 HO3 sing N N 187 GLC O4 HO4 sing N N 188 GLC O6 HO6 sing N N 189 LXC C5 O5 sing N N 190 LXC C5 C4 sing N N 191 LXC C5 H51 sing N N 192 LXC C5 H52 sing N N 193 LXC O5 C1 sing N N 194 LXC C1 O1 sing N N 195 LXC C1 C2 sing N N 196 LXC C1 H1 sing N N 197 LXC O1 HO1 sing N N 198 LXC C2 O2 sing N N 199 LXC C2 C3 sing N N 200 LXC C2 H2 sing N N 201 LXC O2 HO2 sing N N 202 LXC C3 O3 sing N N 203 LXC C3 C4 sing N N 204 LXC C3 H3 sing N N 205 LXC O3 HO3 sing N N 206 LXC C4 O4 sing N N 207 LXC C4 H4 sing N N 208 LXC O4 HO4 sing N N 209 MAN C1 C2 sing N N 210 MAN C1 O1 sing N N 211 MAN C1 O5 sing N N 212 MAN C1 H1 sing N N 213 MAN C2 C3 sing N N 214 MAN C2 O2 sing N N 215 MAN C2 H2 sing N N 216 MAN C3 C4 sing N N 217 MAN C3 O3 sing N N 218 MAN C3 H3 sing N N 219 MAN C4 C5 sing N N 220 MAN C4 O4 sing N N 221 MAN C4 H4 sing N N 222 MAN C5 C6 sing N N 223 MAN C5 O5 sing N N 224 MAN C5 H5 sing N N 225 MAN C6 O6 sing N N 226 MAN C6 H61 sing N N 227 MAN C6 H62 sing N N 228 MAN O1 HO1 sing N N 229 MAN O2 HO2 sing N N 230 MAN O3 HO3 sing N N 231 MAN O4 HO4 sing N N 232 MAN O6 HO6 sing N N 233 NAG C1 C2 sing N N 234 NAG C1 O1 sing N N 235 NAG C1 O5 sing N N 236 NAG C1 H1 sing N N 237 NAG C2 C3 sing N N 238 NAG C2 N2 sing N N 239 NAG C2 H2 sing N N 240 NAG C3 C4 sing N N 241 NAG C3 O3 sing N N 242 NAG C3 H3 sing N N 243 NAG C4 C5 sing N N 244 NAG C4 O4 sing N N 245 NAG C4 H4 sing N N 246 NAG C5 C6 sing N N 247 NAG C5 O5 sing N N 248 NAG C5 H5 sing N N 249 NAG C6 O6 sing N N 250 NAG C6 H61 sing N N 251 NAG C6 H62 sing N N 252 NAG C7 C8 sing N N 253 NAG C7 N2 sing N N 254 NAG C7 O7 doub N N 255 NAG C8 H81 sing N N 256 NAG C8 H82 sing N N 257 NAG C8 H83 sing N N 258 NAG N2 HN2 sing N N 259 NAG O1 HO1 sing N N 260 NAG O3 HO3 sing N N 261 NAG O4 HO4 sing N N 262 NAG O6 HO6 sing N N 263 XYP O1 C1 sing N N 264 XYP O1 HO1 sing N N 265 XYP C1 C2 sing N N 266 XYP C1 O5 sing N N 267 XYP C1 H1 sing N N 268 XYP C2 C3 sing N N 269 XYP C2 O2 sing N N 270 XYP C2 H2 sing N N 271 XYP C3 C4 sing N N 272 XYP C3 O3 sing N N 273 XYP C3 H3 sing N N 274 XYP C4 C5 sing N N 275 XYP C4 O4 sing N N 276 XYP C4 H4 sing N N 277 XYP C5 O5 sing N N 278 XYP C5 H51 sing N N 279 XYP C5 H52 sing N N 280 XYP O2 HO2 sing N N 281 XYP O3 HO3 sing N N 282 XYP O4 HO4 sing N N 283 # _em_admin.current_status REL _em_admin.deposition_date 2026-01-05 _em_admin.deposition_site PDBJ _em_admin.entry_id 22AG _em_admin.last_update 2026-06-24 _em_admin.map_release_date 2026-06-24 _em_admin.title 'Cryo-EM structure of TLP-0' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 1300146 _em_entity_assembly_naturalsource.organism 'algae metagenome' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 80.0 _em_helical_entity.axial_rise_per_subunit 2.7 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX ? ? 'IMAGE ACQUISITION' ? 3 1 1 1 ? ? ? MASKING ? 4 1 1 1 ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 6 1 1 1 ? ? ? 'DIFFRACTION INDEXING' ? 7 1 1 1 ? ? ? 'MODEL FITTING' ? 8 1 1 1 ? ? ? OTHER ? 9 1 1 1 ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 92478205 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 1 MAN 1 n 1 MAN 2 n 1 BMA 3 n 1 BGC 4 n 1 BGC 5 n 1 FUB 6 n 1 GLC 7 n 1 NAG 8 n 1 GLC 9 n 1 BGC 10 n 1 AHR 11 n 1 LXC 12 n 1 FUB 13 n 1 GLA 14 n 1 MAN 15 n 1 BGC 16 n 1 A2G 17 n 1 FUC 18 n 1 XYP 19 n 1 MAN 20 n 1 MAN 21 n # _atom_sites.entry_id 22AG _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ #