HEADER OXIDOREDUCTASE 08-JAN-26 22FK TITLE CRYSTAL STRUCTURE OF THE REDUCED STATE OF TRX1 FROM SCHISTOSOMA TITLE 2 JAPONICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA JAPONICUM; SOURCE 3 ORGANISM_TAXID: 6182; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS THIOREDOXIN-1, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.Q.WANG,S.Q.HUANG,T.W.LIN REVDAT 1 15-APR-26 22FK 0 JRNL AUTH S.Q.WANG,S.Q.HUANG,T.W.LIN JRNL TITL CRYSTAL STRUCTURE OF THE REDUCED STATE OF TRX1 FROM JRNL TITL 2 SCHISTOSOMA JAPONICUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 43078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2154 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2942 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.4000 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.4310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4169 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.85500 REMARK 3 B22 (A**2) : 0.42600 REMARK 3 B33 (A**2) : -1.28100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.183 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.501 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4239 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4112 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5730 ; 1.568 ; 1.829 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9503 ; 0.516 ; 1.794 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 523 ; 5.795 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 20 ; 8.657 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 774 ;15.621 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 673 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4811 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 883 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 716 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 89 ; 0.217 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2054 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 124 ; 0.196 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2107 ; 4.017 ; 4.413 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2107 ; 4.017 ; 4.413 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2625 ; 6.025 ; 7.898 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2626 ; 6.024 ; 7.900 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2132 ; 5.051 ; 5.062 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2133 ; 5.050 ; 5.064 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3105 ; 7.967 ; 8.988 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3106 ; 7.966 ; 8.990 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 10 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 106 NULL REMARK 3 1 A 1 A 106 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 2 A 2 A 105 NULL REMARK 3 2 A 2 A 105 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 3 A 1 A 106 NULL REMARK 3 3 A 1 A 106 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 4 A 2 A 105 NULL REMARK 3 4 A 2 A 105 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 5 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 5 A 2 A 105 NULL REMARK 3 5 A 2 A 105 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 6 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 6 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 6 A 1 A 106 NULL REMARK 3 6 A 1 A 106 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 7 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 7 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 7 A 2 A 105 NULL REMARK 3 7 A 2 A 105 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 8 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 8 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 8 A 2 A 105 NULL REMARK 3 8 A 2 A 105 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 9 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 9 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 9 A 2 A 106 NULL REMARK 3 9 A 2 A 106 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 10 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 10 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 10 A 2 A 105 NULL REMARK 3 10 A 2 A 105 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 22FK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 30-JAN-26. REMARK 100 THE DEPOSITION ID IS D_1300068436. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979183 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43078 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5MM DTT, 4% TASSIMATE (PH 6.5-8.0) AND REMARK 280 15-20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.95800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.68600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.42950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.68600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.95800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.42950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 MET E 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CG - SD - CE ANGL. DEV. = 10.7 DEGREES REMARK 500 MET C 75 CG - SD - CE ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG D 86 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 -165.31 -78.56 REMARK 500 ALA A 93 59.23 -90.77 REMARK 500 LEU C 63 63.48 -119.77 REMARK 500 LEU D 63 63.57 -119.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 86 0.10 SIDE CHAIN REMARK 500 ARG C 51 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 22FK A 1 106 UNP C1L9K4 C1L9K4_SCHJA 1 106 DBREF 22FK B 1 106 UNP C1L9K4 C1L9K4_SCHJA 1 106 DBREF 22FK C 1 106 UNP C1L9K4 C1L9K4_SCHJA 1 106 DBREF 22FK D 1 106 UNP C1L9K4 C1L9K4_SCHJA 1 106 DBREF 22FK E 1 106 UNP C1L9K4 C1L9K4_SCHJA 1 106 SEQRES 1 A 106 MET SER ASN VAL LEU HIS ILE GLU THR ASP ASP ASP PHE SEQRES 2 A 106 ASP SER PHE LEU LYS GLU ASN LYS ASP LYS LEU ILE VAL SEQRES 3 A 106 VAL ASP PHE PHE ALA THR TRP CYS GLY PRO CYS LYS LYS SEQRES 4 A 106 ILE ALA PRO ALA PHE GLU ALA LEU SER ALA ASP ARG SER SEQRES 5 A 106 ALA LEU TYR VAL LYS VAL ASP VAL ASP LYS LEU GLU GLU SEQRES 6 A 106 THR ALA LYS ARG TYR ASP VAL THR ALA MET PRO THR PHE SEQRES 7 A 106 ILE VAL ILE LYS ASN GLY GLU ARG VAL ASP THR VAL VAL SEQRES 8 A 106 GLY ALA SER ILE GLU ASN VAL GLU ALA VAL ILE ARG LYS SEQRES 9 A 106 HIS LYS SEQRES 1 B 106 MET SER ASN VAL LEU HIS ILE GLU THR ASP ASP ASP PHE SEQRES 2 B 106 ASP SER PHE LEU LYS GLU ASN LYS ASP LYS LEU ILE VAL SEQRES 3 B 106 VAL ASP PHE PHE ALA THR TRP CYS GLY PRO CYS LYS LYS SEQRES 4 B 106 ILE ALA PRO ALA PHE GLU ALA LEU SER ALA ASP ARG SER SEQRES 5 B 106 ALA LEU TYR VAL LYS VAL ASP VAL ASP LYS LEU GLU GLU SEQRES 6 B 106 THR ALA LYS ARG TYR ASP VAL THR ALA MET PRO THR PHE SEQRES 7 B 106 ILE VAL ILE LYS ASN GLY GLU ARG VAL ASP THR VAL VAL SEQRES 8 B 106 GLY ALA SER ILE GLU ASN VAL GLU ALA VAL ILE ARG LYS SEQRES 9 B 106 HIS LYS SEQRES 1 C 106 MET SER ASN VAL LEU HIS ILE GLU THR ASP ASP ASP PHE SEQRES 2 C 106 ASP SER PHE LEU LYS GLU ASN LYS ASP LYS LEU ILE VAL SEQRES 3 C 106 VAL ASP PHE PHE ALA THR TRP CYS GLY PRO CYS LYS LYS SEQRES 4 C 106 ILE ALA PRO ALA PHE GLU ALA LEU SER ALA ASP ARG SER SEQRES 5 C 106 ALA LEU TYR VAL LYS VAL ASP VAL ASP LYS LEU GLU GLU SEQRES 6 C 106 THR ALA LYS ARG TYR ASP VAL THR ALA MET PRO THR PHE SEQRES 7 C 106 ILE VAL ILE LYS ASN GLY GLU ARG VAL ASP THR VAL VAL SEQRES 8 C 106 GLY ALA SER ILE GLU ASN VAL GLU ALA VAL ILE ARG LYS SEQRES 9 C 106 HIS LYS SEQRES 1 D 106 MET SER ASN VAL LEU HIS ILE GLU THR ASP ASP ASP PHE SEQRES 2 D 106 ASP SER PHE LEU LYS GLU ASN LYS ASP LYS LEU ILE VAL SEQRES 3 D 106 VAL ASP PHE PHE ALA THR TRP CYS GLY PRO CYS LYS LYS SEQRES 4 D 106 ILE ALA PRO ALA PHE GLU ALA LEU SER ALA ASP ARG SER SEQRES 5 D 106 ALA LEU TYR VAL LYS VAL ASP VAL ASP LYS LEU GLU GLU SEQRES 6 D 106 THR ALA LYS ARG TYR ASP VAL THR ALA MET PRO THR PHE SEQRES 7 D 106 ILE VAL ILE LYS ASN GLY GLU ARG VAL ASP THR VAL VAL SEQRES 8 D 106 GLY ALA SER ILE GLU ASN VAL GLU ALA VAL ILE ARG LYS SEQRES 9 D 106 HIS LYS SEQRES 1 E 106 MET SER ASN VAL LEU HIS ILE GLU THR ASP ASP ASP PHE SEQRES 2 E 106 ASP SER PHE LEU LYS GLU ASN LYS ASP LYS LEU ILE VAL SEQRES 3 E 106 VAL ASP PHE PHE ALA THR TRP CYS GLY PRO CYS LYS LYS SEQRES 4 E 106 ILE ALA PRO ALA PHE GLU ALA LEU SER ALA ASP ARG SER SEQRES 5 E 106 ALA LEU TYR VAL LYS VAL ASP VAL ASP LYS LEU GLU GLU SEQRES 6 E 106 THR ALA LYS ARG TYR ASP VAL THR ALA MET PRO THR PHE SEQRES 7 E 106 ILE VAL ILE LYS ASN GLY GLU ARG VAL ASP THR VAL VAL SEQRES 8 E 106 GLY ALA SER ILE GLU ASN VAL GLU ALA VAL ILE ARG LYS SEQRES 9 E 106 HIS LYS FORMUL 6 HOH *120(H2 O) HELIX 1 AA1 THR A 9 GLU A 19 1 11 HELIX 2 AA2 CYS A 34 SER A 48 1 15 HELIX 3 AA3 LEU A 63 TYR A 70 1 8 HELIX 4 AA4 SER A 94 HIS A 105 1 12 HELIX 5 AA5 THR B 9 ASN B 20 1 12 HELIX 6 AA6 CYS B 34 SER B 48 1 15 HELIX 7 AA7 LEU B 63 TYR B 70 1 8 HELIX 8 AA8 SER B 94 HIS B 105 1 12 HELIX 9 AA9 THR C 9 ASN C 20 1 12 HELIX 10 AB1 CYS C 34 SER C 48 1 15 HELIX 11 AB2 LEU C 63 TYR C 70 1 8 HELIX 12 AB3 SER C 94 HIS C 105 1 12 HELIX 13 AB4 THR D 9 ASN D 20 1 12 HELIX 14 AB5 CYS D 34 SER D 48 1 15 HELIX 15 AB6 LEU D 63 TYR D 70 1 8 HELIX 16 AB7 SER D 94 HIS D 105 1 12 HELIX 17 AB8 THR E 9 ASN E 20 1 12 HELIX 18 AB9 CYS E 34 SER E 48 1 15 HELIX 19 AC1 LEU E 63 TYR E 70 1 8 HELIX 20 AC2 SER E 94 HIS E 105 1 12 SHEET 1 AA1 5 LEU A 5 HIS A 6 0 SHEET 2 AA1 5 LEU A 54 ASP A 59 1 O TYR A 55 N LEU A 5 SHEET 3 AA1 5 LEU A 24 PHE A 30 1 N ASP A 28 O VAL A 56 SHEET 4 AA1 5 THR A 77 LYS A 82 -1 O ILE A 81 N ILE A 25 SHEET 5 AA1 5 GLU A 85 VAL A 91 -1 O VAL A 90 N PHE A 78 SHEET 1 AA2 5 VAL B 4 HIS B 6 0 SHEET 2 AA2 5 LEU B 54 ASP B 59 1 O TYR B 55 N LEU B 5 SHEET 3 AA2 5 LEU B 24 PHE B 30 1 N ASP B 28 O VAL B 56 SHEET 4 AA2 5 THR B 77 LYS B 82 -1 O ILE B 81 N ILE B 25 SHEET 5 AA2 5 GLU B 85 VAL B 91 -1 O VAL B 90 N PHE B 78 SHEET 1 AA3 5 LEU C 5 ILE C 7 0 SHEET 2 AA3 5 LEU C 54 ASP C 59 1 O LYS C 57 N LEU C 5 SHEET 3 AA3 5 LEU C 24 PHE C 30 1 N ASP C 28 O VAL C 56 SHEET 4 AA3 5 THR C 77 LYS C 82 -1 O ILE C 81 N ILE C 25 SHEET 5 AA3 5 GLU C 85 VAL C 91 -1 O VAL C 90 N PHE C 78 SHEET 1 AA4 5 LEU D 5 HIS D 6 0 SHEET 2 AA4 5 ALA D 53 ASP D 59 1 O TYR D 55 N LEU D 5 SHEET 3 AA4 5 LEU D 24 PHE D 30 1 N ASP D 28 O VAL D 56 SHEET 4 AA4 5 THR D 77 LYS D 82 -1 O THR D 77 N PHE D 29 SHEET 5 AA4 5 GLU D 85 VAL D 91 -1 O VAL D 90 N PHE D 78 SHEET 1 AA5 5 LEU E 5 HIS E 6 0 SHEET 2 AA5 5 LEU E 54 ASP E 59 1 O TYR E 55 N LEU E 5 SHEET 3 AA5 5 LEU E 24 PHE E 30 1 N ASP E 28 O VAL E 56 SHEET 4 AA5 5 THR E 77 LYS E 82 -1 O THR E 77 N PHE E 29 SHEET 5 AA5 5 GLU E 85 VAL E 91 -1 O VAL E 90 N PHE E 78 SSBOND 1 CYS A 34 CYS A 37 1555 1555 2.84 SSBOND 2 CYS B 34 CYS B 37 1555 1555 2.74 SSBOND 3 CYS C 34 CYS C 37 1555 1555 2.84 SSBOND 4 CYS D 34 CYS D 37 1555 1555 2.70 SSBOND 5 CYS E 34 CYS E 37 1555 1555 2.83 CISPEP 1 MET A 75 PRO A 76 0 -4.52 CISPEP 2 MET B 75 PRO B 76 0 -6.66 CISPEP 3 MET C 75 PRO C 76 0 -7.00 CISPEP 4 MET D 75 PRO D 76 0 -4.77 CISPEP 5 MET E 75 PRO E 76 0 -7.67 CRYST1 39.916 90.859 151.372 90.00 90.00 90.00 P 21 21 21 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025053 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011006 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006606 0.00000 CONECT 283 300 CONECT 300 283 CONECT 1121 1138 CONECT 1138 1121 CONECT 1951 1968 CONECT 1968 1951 CONECT 2789 2806 CONECT 2806 2789 CONECT 3619 3636 CONECT 3636 3619 MASTER 411 0 0 20 25 0 0 6 4289 5 10 45 END