HEADER IMMUNE SYSTEM 29-JAN-26 23AA TITLE TYPE II-A ANTI-CRISPR PROTEIN ACRIIA17 FROM STREPTOCOCCUS GALLOLYTICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-CRISPR PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS GALLOLYTICUS; SOURCE 3 ORGANISM_TAXID: 315405; SOURCE 4 GENE: SAMN04487840_10126; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CRISPR-CAS SYSTEM, ANTI-CRISPR PROTEIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.B.JIN,H.H.PARK REVDAT 1 12-AUG-26 23AA 0 JRNL AUTH G.E.KIM,H.B.JIN,H.H.PARK JRNL TITL ANTI-CRISPR PROTEIN TYPE II-A 17 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.18.2_3874: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 14137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.8400 - 4.3700 0.99 1375 154 0.2066 0.2186 REMARK 3 2 4.3700 - 3.4700 1.00 1299 144 0.2023 0.2345 REMARK 3 3 3.4700 - 3.0300 1.00 1283 142 0.2243 0.2621 REMARK 3 4 3.0300 - 2.7500 1.00 1283 142 0.2459 0.2969 REMARK 3 5 2.7500 - 2.5600 1.00 1270 141 0.2455 0.2828 REMARK 3 6 2.5600 - 2.4100 1.00 1254 140 0.2237 0.2674 REMARK 3 7 2.4100 - 2.2900 0.99 1246 139 0.2348 0.2902 REMARK 3 8 2.2900 - 2.1900 0.99 1258 140 0.2431 0.3046 REMARK 3 9 2.1900 - 2.1000 0.99 1223 135 0.2749 0.2880 REMARK 3 10 2.1000 - 2.0300 0.99 1232 137 0.2883 0.3151 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1834 REMARK 3 ANGLE : 1.160 2472 REMARK 3 CHIRALITY : 0.060 252 REMARK 3 PLANARITY : 0.007 326 REMARK 3 DIHEDRAL : 21.373 226 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 23AA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JAN-26. REMARK 100 THE DEPOSITION ID IS D_1300069530. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 125 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14137 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 28.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (V/V) 2-PROPANOL, 100 MM TRIS REMARK 280 BASE/ HYDROCHLORIC ACID PH 8.5, 30% (W/V) PEG 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.54000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.59500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.83500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.59500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.54000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.83500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 HIS A 107 REMARK 465 HIS A 108 REMARK 465 HIS B 105 REMARK 465 HIS B 106 REMARK 465 HIS B 107 REMARK 465 HIS B 108 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 61 NH2 ARG B 34 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 98 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 98 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 53 -3.32 -51.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 53 ASP B 54 -131.38 REMARK 500 REMARK 500 REMARK: NULL DBREF1 23AA A 1 100 UNP A0A1H9L9M4_9STRE DBREF2 23AA A A0A1H9L9M4 1 100 DBREF1 23AA B 1 100 UNP A0A1H9L9M4_9STRE DBREF2 23AA B A0A1H9L9M4 1 100 SEQADV 23AA LEU A 101 UNP A0A1H9L9M EXPRESSION TAG SEQADV 23AA GLU A 102 UNP A0A1H9L9M EXPRESSION TAG SEQADV 23AA HIS A 103 UNP A0A1H9L9M EXPRESSION TAG SEQADV 23AA HIS A 104 UNP A0A1H9L9M EXPRESSION TAG SEQADV 23AA HIS A 105 UNP A0A1H9L9M EXPRESSION TAG SEQADV 23AA HIS A 106 UNP A0A1H9L9M EXPRESSION TAG SEQADV 23AA HIS A 107 UNP A0A1H9L9M EXPRESSION TAG SEQADV 23AA HIS A 108 UNP A0A1H9L9M EXPRESSION TAG SEQADV 23AA LEU B 101 UNP A0A1H9L9M EXPRESSION TAG SEQADV 23AA GLU B 102 UNP A0A1H9L9M EXPRESSION TAG SEQADV 23AA HIS B 103 UNP A0A1H9L9M EXPRESSION TAG SEQADV 23AA HIS B 104 UNP A0A1H9L9M EXPRESSION TAG SEQADV 23AA HIS B 105 UNP A0A1H9L9M EXPRESSION TAG SEQADV 23AA HIS B 106 UNP A0A1H9L9M EXPRESSION TAG SEQADV 23AA HIS B 107 UNP A0A1H9L9M EXPRESSION TAG SEQADV 23AA HIS B 108 UNP A0A1H9L9M EXPRESSION TAG SEQRES 1 A 108 MET LYS ILE SER VAL ASP SER GLU LYS LEU LEU ASN GLU SEQRES 2 A 108 ALA ILE ASN ASP PHE ASP ILE PHE GLY GLU ASP PHE ASN SEQRES 3 A 108 VAL TYR ALA ILE TYR SER TYR ARG GLU ASP TYR ASP PHE SEQRES 4 A 108 GLU TYR ILE SER ASP TYR VAL ASP ALA ASP GLU PRO THR SEQRES 5 A 108 ARG ASP GLU PHE GLU THR GLU GLU ASP TYR GLN GLU VAL SEQRES 6 A 108 MET LYS ASP PHE LYS GLU ASN LEU ASP SER LEU LYS PHE SEQRES 7 A 108 THR LYS HIS LYS LYS MET THR ILE ALA ASP LEU VAL HIS SEQRES 8 A 108 GLU LEU TRP GLU GLN ASN ARG ILE PHE LEU GLU HIS HIS SEQRES 9 A 108 HIS HIS HIS HIS SEQRES 1 B 108 MET LYS ILE SER VAL ASP SER GLU LYS LEU LEU ASN GLU SEQRES 2 B 108 ALA ILE ASN ASP PHE ASP ILE PHE GLY GLU ASP PHE ASN SEQRES 3 B 108 VAL TYR ALA ILE TYR SER TYR ARG GLU ASP TYR ASP PHE SEQRES 4 B 108 GLU TYR ILE SER ASP TYR VAL ASP ALA ASP GLU PRO THR SEQRES 5 B 108 ARG ASP GLU PHE GLU THR GLU GLU ASP TYR GLN GLU VAL SEQRES 6 B 108 MET LYS ASP PHE LYS GLU ASN LEU ASP SER LEU LYS PHE SEQRES 7 B 108 THR LYS HIS LYS LYS MET THR ILE ALA ASP LEU VAL HIS SEQRES 8 B 108 GLU LEU TRP GLU GLN ASN ARG ILE PHE LEU GLU HIS HIS SEQRES 9 B 108 HIS HIS HIS HIS FORMUL 3 HOH *29(H2 O) HELIX 1 AA1 MET A 1 GLY A 22 1 22 HELIX 2 AA2 THR A 52 PHE A 56 5 5 HELIX 3 AA3 THR A 58 LEU A 76 1 19 HELIX 4 AA4 ILE A 86 ILE A 99 1 14 HELIX 5 AA5 LYS B 2 GLY B 22 1 21 HELIX 6 AA6 GLU B 35 ASP B 38 5 4 HELIX 7 AA7 THR B 52 PHE B 56 5 5 HELIX 8 AA8 THR B 58 LYS B 77 1 20 HELIX 9 AA9 ILE B 86 ILE B 99 1 14 SHEET 1 AA1 3 PHE A 39 ASP A 47 0 SHEET 2 AA1 3 ASN A 26 ARG A 34 -1 N ILE A 30 O ASP A 44 SHEET 3 AA1 3 HIS A 81 THR A 85 -1 O LYS A 82 N ALA A 29 SHEET 1 AA2 3 PHE B 39 ASP B 47 0 SHEET 2 AA2 3 ASN B 26 ARG B 34 -1 N ILE B 30 O ASP B 44 SHEET 3 AA2 3 HIS B 81 THR B 85 -1 O LYS B 82 N ALA B 29 CRYST1 45.080 57.670 81.190 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022183 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012317 0.00000 MASTER 279 0 0 9 6 0 0 6 1821 2 0 18 END