data_23SS # _entry.id 23SS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 23SS pdb_000023ss 10.2210/pdb23ss/pdb WWPDB D_1300070379 ? ? BMRB 36832 ? 10.13018/BMR36832 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-09-16 ? 2 'Structure model' 1 1 2026-09-23 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 23SS _pdbx_database_status.recvd_initial_deposition_date 2026-02-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'The lasso structure of jiangxilassin A' _pdbx_database_related.db_id 36832 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email kumeta@pharm.hokudai.ac.jp _pdbx_contact_author.name_first Kumeta _pdbx_contact_author.name_last Hiroyuki _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3713-2122 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kumeta, H.' 1 0000-0003-3713-2122 'Kawakami, A.' 2 ? 'Tsunoda, T.' 3 ? 'Dairi, T.' 4 ? 'Ogasawara, Y.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country JA _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biosci.Biotechnol.Biochem. _citation.journal_id_ASTM BBBIEJ _citation.journal_id_CSD 2094 _citation.journal_id_ISSN 0916-8451 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Structural and biochemical analyses of a lasso peptide natural product containing an unusual disulfide bond between consecutive cysteines. ; _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/bbb/zbag135 _citation.pdbx_database_id_PubMed 42709412 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kawakami, A.' 1 ? primary 'Tsunoda, T.' 2 ? primary 'Kumeta, H.' 3 ? primary 'Maruyama, C.' 4 ? primary 'Hamano, Y.' 5 ? primary 'Dairi, T.' 6 ? primary 'Ogasawara, Y.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description MET-THR-CYS-CYS-GLY-LYS-TRP-ALA-ASP-DHA-ILE-TRP-GLY-TYR-PHE-PHE-ASP _entity.formula_weight 2013.298 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'MTCCGKWAD(DHA)IWGYFFD' _entity_poly.pdbx_seq_one_letter_code_can MTCCGKWADSIWGYFFD _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 CYS n 1 4 CYS n 1 5 GLY n 1 6 LYS n 1 7 TRP n 1 8 ALA n 1 9 ASP n 1 10 DHA n 1 11 ILE n 1 12 TRP n 1 13 GLY n 1 14 TYR n 1 15 PHE n 1 16 PHE n 1 17 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 17 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Nonomuraea jiangxiensis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 633440 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Streptomyces lividans' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 1916 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain TK23 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DHA 'peptide linking' n '2-AMINO-ACRYLIC ACID' 2,3-DIDEHYDROALANINE 'C3 H5 N O2' 87.077 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 CYS 3 3 3 CYS CYS A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 TRP 7 7 7 TRP TRP A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 DHA 10 10 10 DHA DHA A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 TRP 12 12 12 TRP TRP A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 TYR 14 14 14 TYR TYR A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 PHE 16 16 16 PHE PHE A . n A 1 17 ASP 17 17 17 ASP ASP A . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 2 2 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 3 3 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 4 4 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 5 5 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 6 6 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 7 7 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 8 8 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 9 9 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 10 10 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 11 11 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 12 12 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 13 13 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 14 14 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 15 15 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 16 16 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 17 17 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 18 18 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 19 19 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 20 20 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 23SS _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 23SS _struct.title 'The lasso structure of jiangxilassin A' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 23SS _struct_keywords.text 'lasso peptides, peptide natural products, ANTIBIOTIC' _struct_keywords.pdbx_keywords ANTIBIOTIC # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 23SS _struct_ref.pdbx_db_accession 23SS _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 23SS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 17 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 23SS _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 17 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 4 SG ? ? A CYS 3 A CYS 4 1_555 ? ? ? ? ? ? ? 2.209 ? ? covale1 covale both ? A ASP 9 C ? ? ? 1_555 A DHA 10 N ? ? A ASP 9 A DHA 10 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A DHA 10 C ? ? ? 1_555 A ILE 11 N ? ? A DHA 10 A ILE 11 1_555 ? ? ? ? ? ? ? 1.324 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 DHA A 10 ? . . . . DHA A 10 ? 1_555 . . . . . . . SER 1 DHA 'Dehydroamino acid' 'Named protein modification' 2 CYS A 3 ? CYS A 4 ? CYS A 3 ? 1_555 CYS A 4 ? 1_555 SG SG . . . None 'Disulfide bridge' # _pdbx_entry_details.entry_id 23SS _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N A MET 1 ? ? CG A ASP 9 ? ? 1.37 2 2 N A MET 1 ? ? CG A ASP 9 ? ? 1.33 3 3 N A MET 1 ? ? CG A ASP 9 ? ? 1.35 4 4 N A MET 1 ? ? CG A ASP 9 ? ? 1.34 5 5 N A MET 1 ? ? CG A ASP 9 ? ? 1.35 6 6 N A MET 1 ? ? CG A ASP 9 ? ? 1.36 7 7 N A MET 1 ? ? CG A ASP 9 ? ? 1.35 8 8 N A MET 1 ? ? CG A ASP 9 ? ? 1.34 9 9 N A MET 1 ? ? CG A ASP 9 ? ? 1.34 10 10 N A MET 1 ? ? CG A ASP 9 ? ? 1.36 11 11 N A MET 1 ? ? CG A ASP 9 ? ? 1.36 12 12 N A MET 1 ? ? CG A ASP 9 ? ? 1.38 13 13 N A MET 1 ? ? CG A ASP 9 ? ? 1.37 14 14 N A MET 1 ? ? CG A ASP 9 ? ? 1.36 15 15 N A MET 1 ? ? CG A ASP 9 ? ? 1.37 16 16 N A MET 1 ? ? CG A ASP 9 ? ? 1.37 17 17 N A MET 1 ? ? CG A ASP 9 ? ? 1.38 18 18 N A MET 1 ? ? CG A ASP 9 ? ? 1.37 19 19 N A MET 1 ? ? CG A ASP 9 ? ? 1.37 20 20 N A MET 1 ? ? CG A ASP 9 ? ? 1.37 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 2 ASP A 9 ? ? -111.80 -157.96 2 3 ASP A 9 ? ? -114.63 -157.81 3 4 ASP A 9 ? ? -115.34 -157.47 4 5 ASP A 9 ? ? -110.68 -157.57 5 6 ASP A 9 ? ? -113.43 -157.82 6 8 ILE A 11 ? ? -51.64 108.74 7 10 ASP A 9 ? ? -113.67 -157.92 8 11 ASP A 9 ? ? -112.67 -161.63 9 14 ASP A 9 ? ? -111.48 -169.68 10 15 TYR A 14 ? ? -56.28 179.46 11 16 TYR A 14 ? ? -44.12 169.14 12 18 ASP A 9 ? ? -109.97 -160.70 13 19 ASP A 9 ? ? -109.12 -166.30 14 19 ILE A 11 ? ? -47.97 150.17 # _pdbx_nmr_ensemble.entry_id 23SS _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 23SS _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'target function' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2.5 mg/mL non label peptide, methanol' _pdbx_nmr_sample_details.solvent_system methanol _pdbx_nmr_sample_details.label NMRsample _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component peptide _pdbx_nmr_exptl_sample.concentration 2.5 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mg/mL _pdbx_nmr_exptl_sample.isotopic_labeling 'non label' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298.15 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-13C HSQC' 1 isotropic 2 1 1 '2D 1H-1H COSY' 1 isotropic 3 1 1 '2D 1H-1H TOCSY' 1 isotropic 7 1 1 '2D 1H-1H NOESY' 1 isotropic 4 1 1 '2D 1H-1H ROESY' 1 isotropic 5 1 1 '2D 1H-13C HSQC-TOCSY' 1 isotropic 6 1 1 '2D 1H-13C HMBC' 1 isotropic # _pdbx_nmr_refine.entry_id 23SS _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 2 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin 4.1.4 'Bruker Biospin' 2 processing CYANA ? 'Guntert, Mumenthaler and Wuthrich' 3 'chemical shift assignment' Sparky 3.113 Goddard 4 'peak picking' Sparky 3.113 Goddard 5 processing TopSpin 4.1.4 'Bruker Biospin' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASP N N N N 14 ASP CA C N S 15 ASP C C N N 16 ASP O O N N 17 ASP CB C N N 18 ASP CG C N N 19 ASP OD1 O N N 20 ASP OD2 O N N 21 ASP OXT O N N 22 ASP H H N N 23 ASP H2 H N N 24 ASP HA H N N 25 ASP HB2 H N N 26 ASP HB3 H N N 27 ASP HD2 H N N 28 ASP HXT H N N 29 CYS N N N N 30 CYS CA C N R 31 CYS C C N N 32 CYS O O N N 33 CYS CB C N N 34 CYS SG S N N 35 CYS OXT O N N 36 CYS H H N N 37 CYS H2 H N N 38 CYS HA H N N 39 CYS HB2 H N N 40 CYS HB3 H N N 41 CYS HG H N N 42 CYS HXT H N N 43 DHA N N N N 44 DHA CA C N N 45 DHA CB C N N 46 DHA C C N N 47 DHA O O N N 48 DHA OXT O N N 49 DHA H H N N 50 DHA H2 H N N 51 DHA HB1 H N N 52 DHA HB2 H N N 53 DHA HXT H N N 54 GLY N N N N 55 GLY CA C N N 56 GLY C C N N 57 GLY O O N N 58 GLY OXT O N N 59 GLY H H N N 60 GLY H2 H N N 61 GLY HA2 H N N 62 GLY HA3 H N N 63 GLY HXT H N N 64 ILE N N N N 65 ILE CA C N S 66 ILE C C N N 67 ILE O O N N 68 ILE CB C N S 69 ILE CG1 C N N 70 ILE CG2 C N N 71 ILE CD1 C N N 72 ILE OXT O N N 73 ILE H H N N 74 ILE H2 H N N 75 ILE HA H N N 76 ILE HB H N N 77 ILE HG12 H N N 78 ILE HG13 H N N 79 ILE HG21 H N N 80 ILE HG22 H N N 81 ILE HG23 H N N 82 ILE HD11 H N N 83 ILE HD12 H N N 84 ILE HD13 H N N 85 ILE HXT H N N 86 LYS N N N N 87 LYS CA C N S 88 LYS C C N N 89 LYS O O N N 90 LYS CB C N N 91 LYS CG C N N 92 LYS CD C N N 93 LYS CE C N N 94 LYS NZ N N N 95 LYS OXT O N N 96 LYS H H N N 97 LYS H2 H N N 98 LYS HA H N N 99 LYS HB2 H N N 100 LYS HB3 H N N 101 LYS HG2 H N N 102 LYS HG3 H N N 103 LYS HD2 H N N 104 LYS HD3 H N N 105 LYS HE2 H N N 106 LYS HE3 H N N 107 LYS HZ1 H N N 108 LYS HZ2 H N N 109 LYS HZ3 H N N 110 LYS HXT H N N 111 MET N N N N 112 MET CA C N S 113 MET C C N N 114 MET O O N N 115 MET CB C N N 116 MET CG C N N 117 MET SD S N N 118 MET CE C N N 119 MET OXT O N N 120 MET H H N N 121 MET H2 H N N 122 MET HA H N N 123 MET HB2 H N N 124 MET HB3 H N N 125 MET HG2 H N N 126 MET HG3 H N N 127 MET HE1 H N N 128 MET HE2 H N N 129 MET HE3 H N N 130 MET HXT H N N 131 PHE N N N N 132 PHE CA C N S 133 PHE C C N N 134 PHE O O N N 135 PHE CB C N N 136 PHE CG C Y N 137 PHE CD1 C Y N 138 PHE CD2 C Y N 139 PHE CE1 C Y N 140 PHE CE2 C Y N 141 PHE CZ C Y N 142 PHE OXT O N N 143 PHE H H N N 144 PHE H2 H N N 145 PHE HA H N N 146 PHE HB2 H N N 147 PHE HB3 H N N 148 PHE HD1 H N N 149 PHE HD2 H N N 150 PHE HE1 H N N 151 PHE HE2 H N N 152 PHE HZ H N N 153 PHE HXT H N N 154 THR N N N N 155 THR CA C N S 156 THR C C N N 157 THR O O N N 158 THR CB C N R 159 THR OG1 O N N 160 THR CG2 C N N 161 THR OXT O N N 162 THR H H N N 163 THR H2 H N N 164 THR HA H N N 165 THR HB H N N 166 THR HG1 H N N 167 THR HG21 H N N 168 THR HG22 H N N 169 THR HG23 H N N 170 THR HXT H N N 171 TRP N N N N 172 TRP CA C N S 173 TRP C C N N 174 TRP O O N N 175 TRP CB C N N 176 TRP CG C Y N 177 TRP CD1 C Y N 178 TRP CD2 C Y N 179 TRP NE1 N Y N 180 TRP CE2 C Y N 181 TRP CE3 C Y N 182 TRP CZ2 C Y N 183 TRP CZ3 C Y N 184 TRP CH2 C Y N 185 TRP OXT O N N 186 TRP H H N N 187 TRP H2 H N N 188 TRP HA H N N 189 TRP HB2 H N N 190 TRP HB3 H N N 191 TRP HD1 H N N 192 TRP HE1 H N N 193 TRP HE3 H N N 194 TRP HZ2 H N N 195 TRP HZ3 H N N 196 TRP HH2 H N N 197 TRP HXT H N N 198 TYR N N N N 199 TYR CA C N S 200 TYR C C N N 201 TYR O O N N 202 TYR CB C N N 203 TYR CG C Y N 204 TYR CD1 C Y N 205 TYR CD2 C Y N 206 TYR CE1 C Y N 207 TYR CE2 C Y N 208 TYR CZ C Y N 209 TYR OH O N N 210 TYR OXT O N N 211 TYR H H N N 212 TYR H2 H N N 213 TYR HA H N N 214 TYR HB2 H N N 215 TYR HB3 H N N 216 TYR HD1 H N N 217 TYR HD2 H N N 218 TYR HE1 H N N 219 TYR HE2 H N N 220 TYR HH H N N 221 TYR HXT H N N 222 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASP N CA sing N N 13 ASP N H sing N N 14 ASP N H2 sing N N 15 ASP CA C sing N N 16 ASP CA CB sing N N 17 ASP CA HA sing N N 18 ASP C O doub N N 19 ASP C OXT sing N N 20 ASP CB CG sing N N 21 ASP CB HB2 sing N N 22 ASP CB HB3 sing N N 23 ASP CG OD1 doub N N 24 ASP CG OD2 sing N N 25 ASP OD2 HD2 sing N N 26 ASP OXT HXT sing N N 27 CYS N CA sing N N 28 CYS N H sing N N 29 CYS N H2 sing N N 30 CYS CA C sing N N 31 CYS CA CB sing N N 32 CYS CA HA sing N N 33 CYS C O doub N N 34 CYS C OXT sing N N 35 CYS CB SG sing N N 36 CYS CB HB2 sing N N 37 CYS CB HB3 sing N N 38 CYS SG HG sing N N 39 CYS OXT HXT sing N N 40 DHA N CA sing N N 41 DHA N H sing N N 42 DHA N H2 sing N N 43 DHA CA CB doub N N 44 DHA CA C sing N N 45 DHA CB HB1 sing N N 46 DHA CB HB2 sing N N 47 DHA C O doub N N 48 DHA C OXT sing N N 49 DHA OXT HXT sing N N 50 GLY N CA sing N N 51 GLY N H sing N N 52 GLY N H2 sing N N 53 GLY CA C sing N N 54 GLY CA HA2 sing N N 55 GLY CA HA3 sing N N 56 GLY C O doub N N 57 GLY C OXT sing N N 58 GLY OXT HXT sing N N 59 ILE N CA sing N N 60 ILE N H sing N N 61 ILE N H2 sing N N 62 ILE CA C sing N N 63 ILE CA CB sing N N 64 ILE CA HA sing N N 65 ILE C O doub N N 66 ILE C OXT sing N N 67 ILE CB CG1 sing N N 68 ILE CB CG2 sing N N 69 ILE CB HB sing N N 70 ILE CG1 CD1 sing N N 71 ILE CG1 HG12 sing N N 72 ILE CG1 HG13 sing N N 73 ILE CG2 HG21 sing N N 74 ILE CG2 HG22 sing N N 75 ILE CG2 HG23 sing N N 76 ILE CD1 HD11 sing N N 77 ILE CD1 HD12 sing N N 78 ILE CD1 HD13 sing N N 79 ILE OXT HXT sing N N 80 LYS N CA sing N N 81 LYS N H sing N N 82 LYS N H2 sing N N 83 LYS CA C sing N N 84 LYS CA CB sing N N 85 LYS CA HA sing N N 86 LYS C O doub N N 87 LYS C OXT sing N N 88 LYS CB CG sing N N 89 LYS CB HB2 sing N N 90 LYS CB HB3 sing N N 91 LYS CG CD sing N N 92 LYS CG HG2 sing N N 93 LYS CG HG3 sing N N 94 LYS CD CE sing N N 95 LYS CD HD2 sing N N 96 LYS CD HD3 sing N N 97 LYS CE NZ sing N N 98 LYS CE HE2 sing N N 99 LYS CE HE3 sing N N 100 LYS NZ HZ1 sing N N 101 LYS NZ HZ2 sing N N 102 LYS NZ HZ3 sing N N 103 LYS OXT HXT sing N N 104 MET N CA sing N N 105 MET N H sing N N 106 MET N H2 sing N N 107 MET CA C sing N N 108 MET CA CB sing N N 109 MET CA HA sing N N 110 MET C O doub N N 111 MET C OXT sing N N 112 MET CB CG sing N N 113 MET CB HB2 sing N N 114 MET CB HB3 sing N N 115 MET CG SD sing N N 116 MET CG HG2 sing N N 117 MET CG HG3 sing N N 118 MET SD CE sing N N 119 MET CE HE1 sing N N 120 MET CE HE2 sing N N 121 MET CE HE3 sing N N 122 MET OXT HXT sing N N 123 PHE N CA sing N N 124 PHE N H sing N N 125 PHE N H2 sing N N 126 PHE CA C sing N N 127 PHE CA CB sing N N 128 PHE CA HA sing N N 129 PHE C O doub N N 130 PHE C OXT sing N N 131 PHE CB CG sing N N 132 PHE CB HB2 sing N N 133 PHE CB HB3 sing N N 134 PHE CG CD1 doub Y N 135 PHE CG CD2 sing Y N 136 PHE CD1 CE1 sing Y N 137 PHE CD1 HD1 sing N N 138 PHE CD2 CE2 doub Y N 139 PHE CD2 HD2 sing N N 140 PHE CE1 CZ doub Y N 141 PHE CE1 HE1 sing N N 142 PHE CE2 CZ sing Y N 143 PHE CE2 HE2 sing N N 144 PHE CZ HZ sing N N 145 PHE OXT HXT sing N N 146 THR N CA sing N N 147 THR N H sing N N 148 THR N H2 sing N N 149 THR CA C sing N N 150 THR CA CB sing N N 151 THR CA HA sing N N 152 THR C O doub N N 153 THR C OXT sing N N 154 THR CB OG1 sing N N 155 THR CB CG2 sing N N 156 THR CB HB sing N N 157 THR OG1 HG1 sing N N 158 THR CG2 HG21 sing N N 159 THR CG2 HG22 sing N N 160 THR CG2 HG23 sing N N 161 THR OXT HXT sing N N 162 TRP N CA sing N N 163 TRP N H sing N N 164 TRP N H2 sing N N 165 TRP CA C sing N N 166 TRP CA CB sing N N 167 TRP CA HA sing N N 168 TRP C O doub N N 169 TRP C OXT sing N N 170 TRP CB CG sing N N 171 TRP CB HB2 sing N N 172 TRP CB HB3 sing N N 173 TRP CG CD1 doub Y N 174 TRP CG CD2 sing Y N 175 TRP CD1 NE1 sing Y N 176 TRP CD1 HD1 sing N N 177 TRP CD2 CE2 doub Y N 178 TRP CD2 CE3 sing Y N 179 TRP NE1 CE2 sing Y N 180 TRP NE1 HE1 sing N N 181 TRP CE2 CZ2 sing Y N 182 TRP CE3 CZ3 doub Y N 183 TRP CE3 HE3 sing N N 184 TRP CZ2 CH2 doub Y N 185 TRP CZ2 HZ2 sing N N 186 TRP CZ3 CH2 sing Y N 187 TRP CZ3 HZ3 sing N N 188 TRP CH2 HH2 sing N N 189 TRP OXT HXT sing N N 190 TYR N CA sing N N 191 TYR N H sing N N 192 TYR N H2 sing N N 193 TYR CA C sing N N 194 TYR CA CB sing N N 195 TYR CA HA sing N N 196 TYR C O doub N N 197 TYR C OXT sing N N 198 TYR CB CG sing N N 199 TYR CB HB2 sing N N 200 TYR CB HB3 sing N N 201 TYR CG CD1 doub Y N 202 TYR CG CD2 sing Y N 203 TYR CD1 CE1 sing Y N 204 TYR CD1 HD1 sing N N 205 TYR CD2 CE2 doub Y N 206 TYR CD2 HD2 sing N N 207 TYR CE1 CZ doub Y N 208 TYR CE1 HE1 sing N N 209 TYR CE2 CZ sing Y N 210 TYR CE2 HE2 sing N N 211 TYR CZ OH sing N N 212 TYR OH HH sing N N 213 TYR OXT HXT sing N N 214 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science (JSPS)' Japan JP16H06452 1 'Japan Society for the Promotion of Science (JSPS)' Japan JP18H03937 2 'Japan Society for the Promotion of Science (JSPS)' Japan JP22H04976 3 'Japan Society for the Promotion of Science (JSPS)' Japan JP18K05449 4 'Japan Society for the Promotion of Science (JSPS)' Japan JP22H05130 5 'Japan Society for the Promotion of Science (JSPS)' Japan JP23H02145 6 'Japan Society for the Promotion of Science (JSPS)' Japan JP23K19276 7 'Japan Society for the Promotion of Science (JSPS)' Japan JP25KJ0506 8 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE NEO' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.details 'CPTCI probe' # _atom_sites.entry_id 23SS _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ #