HEADER HYDROLASE 18-FEB-26 23UL TITLE CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS GYRB ATPASE DOMAIN COMPLEXED TITLE 2 WITH AMPPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE 2 TOPOISOMERASE SUBUNIT B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DNA GYRASE SUBUNIT B; COMPND 5 EC: 5.6.2.2; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE N-TERMINAL 9 RESIDUES, C-TERMINAL 9 RESIDUES, AND COMPND 8 RESIDUES 305-310 RESIDUES ARE INVISIBLE IN THE CRYSTAL STRUCTURE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS VF5; SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 GENE: GYRB, AQ_1026; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 KEYWDS DNA GYRASE, ATPASE, GHKL ATPASE, AQUIFEX AEOLICUS, THERMOPHILE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.FUKUI,T.MURAKAWA,T.YANO REVDAT 1 21-OCT-26 23UL 0 JRNL AUTH K.FUKUI,A.SHIBUYA,T.MURAKAWA,T.YANO JRNL TITL TWO GLU/ASP RESIDUES COOPERATIVELY MEDIATE AN EARLY STEP OF JRNL TITL 2 ATP HYDROLYSIS IN GHKL ATPASES MUTL AND GYRB. JRNL REF ELIFE V. 15 2026 JRNL REFN ESSN 2050-084X JRNL PMID 42788712 JRNL DOI 10.7554/ELIFE.111443 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 104855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1600 - 3.9800 1.00 7911 154 0.1779 0.1739 REMARK 3 2 3.9800 - 3.1600 1.00 7627 148 0.1728 0.2088 REMARK 3 3 3.1600 - 2.7600 1.00 7638 149 0.1957 0.2105 REMARK 3 4 2.7600 - 2.5100 1.00 7568 146 0.2020 0.2321 REMARK 3 5 2.5100 - 2.3300 1.00 7463 145 0.1941 0.2077 REMARK 3 6 2.3300 - 2.1900 1.00 7495 146 0.1889 0.2079 REMARK 3 7 2.1900 - 2.0800 0.99 7485 146 0.1962 0.1861 REMARK 3 8 2.0800 - 1.9900 1.00 7459 145 0.2192 0.2399 REMARK 3 9 1.9900 - 1.9100 0.99 7430 144 0.2276 0.2574 REMARK 3 10 1.9100 - 1.8500 0.99 7385 144 0.2410 0.2887 REMARK 3 11 1.8500 - 1.7900 0.96 7183 140 0.2601 0.3112 REMARK 3 12 1.7900 - 1.7400 0.92 6912 134 0.2977 0.3097 REMARK 3 13 1.7400 - 1.6900 0.90 6773 132 0.3470 0.3316 REMARK 3 14 1.6900 - 1.6500 0.88 6528 125 0.3799 0.4562 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.302 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.634 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5847 REMARK 3 ANGLE : 0.898 7920 REMARK 3 CHIRALITY : 0.058 906 REMARK 3 PLANARITY : 0.007 1003 REMARK 3 DIHEDRAL : 10.449 821 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 22.7367 9.8775 29.2738 REMARK 3 T TENSOR REMARK 3 T11: 0.2038 T22: 0.2089 REMARK 3 T33: 0.1681 T12: 0.0379 REMARK 3 T13: -0.0336 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.4409 L22: 0.7683 REMARK 3 L33: 0.7507 L12: 0.2115 REMARK 3 L13: -0.0852 L23: 0.2315 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: -0.0070 S13: 0.0966 REMARK 3 S21: -0.0789 S22: -0.0574 S23: 0.1529 REMARK 3 S31: -0.1288 S32: -0.1758 S33: 0.0262 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 23UL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-FEB-26. REMARK 100 THE DEPOSITION ID IS D_1300070462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107387 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 43.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M HEPES PH REMARK 280 7.5, 45% V/V (+/-)-2-METHYL-2,4-PENTANEDIOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.65500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.14500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.65500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.14500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 GLN A 5 REMARK 465 SER A 6 REMARK 465 GLN A 7 REMARK 465 THR A 8 REMARK 465 PRO A 9 REMARK 465 LEU A 307 REMARK 465 ALA A 308 REMARK 465 LYS A 309 REMARK 465 GLU A 310 REMARK 465 LEU A 311 REMARK 465 LYS A 312 REMARK 465 ALA A 389 REMARK 465 ALA A 390 REMARK 465 LYS A 391 REMARK 465 LYS A 392 REMARK 465 ALA A 393 REMARK 465 LYS A 394 REMARK 465 GLU A 395 REMARK 465 LEU A 396 REMARK 465 VAL A 397 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LYS B 3 REMARK 465 ARG B 4 REMARK 465 GLN B 5 REMARK 465 SER B 6 REMARK 465 GLN B 7 REMARK 465 THR B 8 REMARK 465 PRO B 9 REMARK 465 GLN B 303 REMARK 465 GLY B 304 REMARK 465 LEU B 305 REMARK 465 LYS B 306 REMARK 465 LEU B 307 REMARK 465 ALA B 308 REMARK 465 LYS B 309 REMARK 465 GLU B 310 REMARK 465 LEU B 311 REMARK 465 LYS B 312 REMARK 465 LYS B 313 REMARK 465 SER B 314 REMARK 465 PHE B 315 REMARK 465 ARG B 387 REMARK 465 GLU B 388 REMARK 465 ALA B 389 REMARK 465 ALA B 390 REMARK 465 LYS B 391 REMARK 465 LYS B 392 REMARK 465 ALA B 393 REMARK 465 LYS B 394 REMARK 465 GLU B 395 REMARK 465 LEU B 396 REMARK 465 VAL B 397 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 10 CG CD OE1 NE2 REMARK 470 ARG A 71 CZ NH1 NH2 REMARK 470 LYS A 152 CD CE NZ REMARK 470 GLU A 155 CD OE1 OE2 REMARK 470 LYS A 167 CD CE NZ REMARK 470 GLU A 180 CD OE1 OE2 REMARK 470 GLU A 229 CD OE1 OE2 REMARK 470 LYS A 232 CE NZ REMARK 470 TYR A 267 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 306 CG CD CE NZ REMARK 470 LYS A 313 CB CG CD CE NZ REMARK 470 PHE A 315 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 LYS A 368 CG CD CE NZ REMARK 470 GLU A 382 CD OE1 OE2 REMARK 470 GLU A 388 CG CD OE1 OE2 REMARK 470 GLN B 10 CG CD OE1 NE2 REMARK 470 GLU B 11 CD OE1 OE2 REMARK 470 GLU B 15 CD OE1 OE2 REMARK 470 ARG B 40 CD NE CZ NH1 NH2 REMARK 470 LYS B 94 CE NZ REMARK 470 LYS B 112 CD CE NZ REMARK 470 LYS B 152 CD CE NZ REMARK 470 GLU B 165 CG CD OE1 OE2 REMARK 470 LYS B 167 CG CD CE NZ REMARK 470 GLU B 205 CG CD OE1 OE2 REMARK 470 ASP B 224 CG OD1 OD2 REMARK 470 GLU B 236 CD OE1 OE2 REMARK 470 LYS B 238 CD CE NZ REMARK 470 GLU B 239 CG CD OE1 OE2 REMARK 470 LYS B 243 CG CD CE NZ REMARK 470 LYS B 265 CG CD CE NZ REMARK 470 ASP B 266 CG OD1 OD2 REMARK 470 TYR B 267 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 268 CG CD CE NZ REMARK 470 ARG B 270 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 300 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 352 CG CD OE1 NE2 REMARK 470 GLU B 367 CB CG CD OE1 OE2 REMARK 470 LYS B 368 CG CD CE NZ REMARK 470 LYS B 369 CG CD CE NZ REMARK 470 ARG B 370 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 374 CG CD CE NZ REMARK 470 GLU B 378 CG CD OE1 OE2 REMARK 470 GLU B 382 CG CD OE1 OE2 REMARK 470 ALA B 383 CB REMARK 470 ALA B 384 CB REMARK 470 LEU B 385 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 112 54.25 -111.08 REMARK 500 THR A 116 -72.73 -112.50 REMARK 500 TYR A 117 73.44 -118.46 REMARK 500 LEU A 121 -11.98 -163.22 REMARK 500 LYS A 265 48.91 -94.01 REMARK 500 LYS A 369 68.17 -107.05 REMARK 500 ARG A 387 49.08 -81.99 REMARK 500 LYS B 112 50.65 -109.93 REMARK 500 THR B 116 -83.09 -114.58 REMARK 500 TYR B 117 61.50 -103.06 REMARK 500 LEU B 121 -11.53 -163.30 REMARK 500 LYS B 265 37.42 -74.40 REMARK 500 LYS B 369 79.28 -104.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 689 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH B 594 DISTANCE = 8.05 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 52 OD1 REMARK 620 2 ANP A 402 O1A 92.8 REMARK 620 3 ANP A 402 O3G 166.6 100.4 REMARK 620 4 ANP A 402 O1B 88.9 87.0 89.5 REMARK 620 5 HOH A 529 O 93.4 90.2 88.9 176.5 REMARK 620 6 HOH A 565 O 79.3 172.1 87.5 92.7 90.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 52 OD1 REMARK 620 2 ANP B 402 O3G 163.5 REMARK 620 3 ANP B 402 O2B 89.5 94.3 REMARK 620 4 ANP B 402 O2A 92.9 103.4 85.3 REMARK 620 5 HOH B 517 O 89.5 88.9 171.9 86.7 REMARK 620 6 HOH B 528 O 78.4 85.2 95.6 171.3 92.1 REMARK 620 N 1 2 3 4 5 DBREF 23UL A 1 397 UNP O67137 TOP4B_AQUAE 1 397 DBREF 23UL B 1 397 UNP O67137 TOP4B_AQUAE 1 397 SEQRES 1 A 397 MET LYS LYS ARG GLN SER GLN THR PRO GLN GLU TYR THR SEQRES 2 A 397 ALA GLU ALA ILE LYS ALA VAL SER GLY LEU GLU HIS VAL SEQRES 3 A 397 ARG LEU ARG PRO ALA MET TYR ILE GLY ASP ILE GLY GLU SEQRES 4 A 397 ARG GLY LEU HIS HIS LEU ILE TRP GLU ILE LEU ASP ASN SEQRES 5 A 397 ALA VAL ASP GLU ALA VAL ALA GLY TYR ALA ARG ASN ILE SEQRES 6 A 397 SER VAL THR ILE HIS ARG ASP ASN SER VAL THR VAL GLU SEQRES 7 A 397 ASP ASP GLY ARG GLY ILE PRO VAL ASP ILE HIS PRO GLU SEQRES 8 A 397 THR GLY LYS PRO ALA VAL GLU MET VAL PHE THR MET LEU SEQRES 9 A 397 GLY ALA GLY GLY LYS PHE GLU LYS LYS VAL TYR THR TYR SEQRES 10 A 397 SER GLY GLY LEU HIS GLY VAL GLY ALA SER VAL VAL ASN SEQRES 11 A 397 ALA LEU SER GLU TRP LEU ILE VAL GLU VAL TYR ARG ASP SEQRES 12 A 397 GLY LYS ILE TYR ARG MET ALA PHE LYS ARG GLY GLU VAL SEQRES 13 A 397 VAL GLU PRO LEU HIS VAL VAL GLY GLU THR LYS LYS ARG SEQRES 14 A 397 GLY THR LYS VAL SER PHE LYS PRO ASP PRO GLU ILE PHE SEQRES 15 A 397 GLU THR THR GLU ILE LYS PHE ASP ILE VAL GLU LYS ARG SEQRES 16 A 397 VAL ARG GLU LEU ALA TYR LEU ASN PRO GLU VAL LYS PHE SEQRES 17 A 397 GLU LEU THR ASP GLU ARG LEU GLY LYS HIS LEU ILE TYR SEQRES 18 A 397 LYS PHE ASP ARG GLY ILE GLU GLU LEU VAL LYS TYR LEU SEQRES 19 A 397 ASN GLU GLY LYS GLU PRO LEU PHE LYS ASP ILE ILE ARG SEQRES 20 A 397 ILE GLN GLY GLU LYS GLU GLY VAL ILE VAL ASP ILE ALA SEQRES 21 A 397 PHE GLN TYR VAL LYS ASP TYR LYS GLU ARG ILE GLU SER SEQRES 22 A 397 PHE VAL ASN ASN ILE LYS THR VAL GLU GLY GLY THR HIS SEQRES 23 A 397 VAL THR GLY PHE ARG SER GLY LEU SER LYS ALA VAL ILE SEQRES 24 A 397 ARG MET ALA GLN GLY LEU LYS LEU ALA LYS GLU LEU LYS SEQRES 25 A 397 LYS SER PHE THR GLY GLU ASP VAL ARG GLU GLY LEU THR SEQRES 26 A 397 ALA VAL VAL ALA CYS LYS VAL PRO ASN PRO GLN PHE GLU SEQRES 27 A 397 GLY GLN THR LYS THR LYS LEU GLY ASN GLN ASN VAL LYS SEQRES 28 A 397 GLN ILE VAL GLU SER ILE THR TYR ASP PHE LEU THR SER SEQRES 29 A 397 TYR PHE GLU LYS LYS ARG ASP VAL LEU LYS ALA ILE VAL SEQRES 30 A 397 GLU LYS ALA ILE GLU ALA ALA LEU ALA ARG GLU ALA ALA SEQRES 31 A 397 LYS LYS ALA LYS GLU LEU VAL SEQRES 1 B 397 MET LYS LYS ARG GLN SER GLN THR PRO GLN GLU TYR THR SEQRES 2 B 397 ALA GLU ALA ILE LYS ALA VAL SER GLY LEU GLU HIS VAL SEQRES 3 B 397 ARG LEU ARG PRO ALA MET TYR ILE GLY ASP ILE GLY GLU SEQRES 4 B 397 ARG GLY LEU HIS HIS LEU ILE TRP GLU ILE LEU ASP ASN SEQRES 5 B 397 ALA VAL ASP GLU ALA VAL ALA GLY TYR ALA ARG ASN ILE SEQRES 6 B 397 SER VAL THR ILE HIS ARG ASP ASN SER VAL THR VAL GLU SEQRES 7 B 397 ASP ASP GLY ARG GLY ILE PRO VAL ASP ILE HIS PRO GLU SEQRES 8 B 397 THR GLY LYS PRO ALA VAL GLU MET VAL PHE THR MET LEU SEQRES 9 B 397 GLY ALA GLY GLY LYS PHE GLU LYS LYS VAL TYR THR TYR SEQRES 10 B 397 SER GLY GLY LEU HIS GLY VAL GLY ALA SER VAL VAL ASN SEQRES 11 B 397 ALA LEU SER GLU TRP LEU ILE VAL GLU VAL TYR ARG ASP SEQRES 12 B 397 GLY LYS ILE TYR ARG MET ALA PHE LYS ARG GLY GLU VAL SEQRES 13 B 397 VAL GLU PRO LEU HIS VAL VAL GLY GLU THR LYS LYS ARG SEQRES 14 B 397 GLY THR LYS VAL SER PHE LYS PRO ASP PRO GLU ILE PHE SEQRES 15 B 397 GLU THR THR GLU ILE LYS PHE ASP ILE VAL GLU LYS ARG SEQRES 16 B 397 VAL ARG GLU LEU ALA TYR LEU ASN PRO GLU VAL LYS PHE SEQRES 17 B 397 GLU LEU THR ASP GLU ARG LEU GLY LYS HIS LEU ILE TYR SEQRES 18 B 397 LYS PHE ASP ARG GLY ILE GLU GLU LEU VAL LYS TYR LEU SEQRES 19 B 397 ASN GLU GLY LYS GLU PRO LEU PHE LYS ASP ILE ILE ARG SEQRES 20 B 397 ILE GLN GLY GLU LYS GLU GLY VAL ILE VAL ASP ILE ALA SEQRES 21 B 397 PHE GLN TYR VAL LYS ASP TYR LYS GLU ARG ILE GLU SER SEQRES 22 B 397 PHE VAL ASN ASN ILE LYS THR VAL GLU GLY GLY THR HIS SEQRES 23 B 397 VAL THR GLY PHE ARG SER GLY LEU SER LYS ALA VAL ILE SEQRES 24 B 397 ARG MET ALA GLN GLY LEU LYS LEU ALA LYS GLU LEU LYS SEQRES 25 B 397 LYS SER PHE THR GLY GLU ASP VAL ARG GLU GLY LEU THR SEQRES 26 B 397 ALA VAL VAL ALA CYS LYS VAL PRO ASN PRO GLN PHE GLU SEQRES 27 B 397 GLY GLN THR LYS THR LYS LEU GLY ASN GLN ASN VAL LYS SEQRES 28 B 397 GLN ILE VAL GLU SER ILE THR TYR ASP PHE LEU THR SER SEQRES 29 B 397 TYR PHE GLU LYS LYS ARG ASP VAL LEU LYS ALA ILE VAL SEQRES 30 B 397 GLU LYS ALA ILE GLU ALA ALA LEU ALA ARG GLU ALA ALA SEQRES 31 B 397 LYS LYS ALA LYS GLU LEU VAL HET MG A 401 1 HET ANP A 402 31 HET MPD A 403 8 HET MPD A 404 8 HET MG B 401 1 HET ANP B 402 31 HET MPD B 403 8 HETNAM MG MAGNESIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 3 MG 2(MG 2+) FORMUL 4 ANP 2(C10 H17 N6 O12 P3) FORMUL 5 MPD 3(C6 H14 O2) FORMUL 10 HOH *283(H2 O) HELIX 1 AA1 THR A 13 ILE A 17 5 5 HELIX 2 AA2 SER A 21 ARG A 29 1 9 HELIX 3 AA3 ARG A 29 GLY A 35 1 7 HELIX 4 AA4 GLY A 38 ALA A 59 1 22 HELIX 5 AA5 PRO A 95 MET A 103 1 9 HELIX 6 AA6 VAL A 124 LEU A 132 1 9 HELIX 7 AA7 LYS A 188 ASN A 203 1 16 HELIX 8 AA8 GLY A 226 ASN A 235 1 10 HELIX 9 AA9 GLY A 284 ALA A 302 1 19 HELIX 10 AB1 THR A 316 GLU A 322 1 7 HELIX 11 AB2 ASN A 349 LYS A 369 1 21 HELIX 12 AB3 LYS A 369 ARG A 387 1 19 HELIX 13 AB4 THR B 13 ILE B 17 5 5 HELIX 14 AB5 SER B 21 ARG B 29 1 9 HELIX 15 AB6 ARG B 29 GLY B 35 1 7 HELIX 16 AB7 GLY B 38 ALA B 59 1 22 HELIX 17 AB8 PRO B 95 MET B 103 1 9 HELIX 18 AB9 VAL B 124 LEU B 132 1 9 HELIX 19 AC1 LYS B 188 ASN B 203 1 16 HELIX 20 AC2 GLY B 226 ASN B 235 1 10 HELIX 21 AC3 GLY B 284 ALA B 302 1 19 HELIX 22 AC4 GLY B 317 ARG B 321 1 5 HELIX 23 AC5 ASN B 347 LYS B 369 1 23 HELIX 24 AC6 LYS B 369 LEU B 385 1 17 SHEET 1 AA1 2 LYS A 18 ALA A 19 0 SHEET 2 AA1 2 ALA B 106 GLY B 107 -1 O GLY B 107 N LYS A 18 SHEET 1 AA2 8 GLU A 155 GLU A 165 0 SHEET 2 AA2 8 LYS A 145 LYS A 152 -1 N ILE A 146 O VAL A 163 SHEET 3 AA2 8 SER A 133 ARG A 142 -1 N LEU A 136 O PHE A 151 SHEET 4 AA2 8 GLY A 170 PRO A 177 -1 O GLY A 170 N TYR A 141 SHEET 5 AA2 8 VAL A 75 ASP A 79 -1 N VAL A 77 O VAL A 173 SHEET 6 AA2 8 ASN A 64 ILE A 69 -1 N THR A 68 O THR A 76 SHEET 7 AA2 8 LYS A 207 ASP A 212 1 O GLU A 209 N VAL A 67 SHEET 8 AA2 8 LYS A 217 TYR A 221 -1 O TYR A 221 N PHE A 208 SHEET 1 AA3 2 ALA A 106 GLY A 107 0 SHEET 2 AA3 2 LYS B 18 ALA B 19 -1 O LYS B 18 N GLY A 107 SHEET 1 AA4 5 ILE A 246 LYS A 252 0 SHEET 2 AA4 5 VAL A 255 TYR A 263 -1 O ILE A 259 N ILE A 248 SHEET 3 AA4 5 LEU A 324 LYS A 331 -1 O VAL A 327 N ALA A 260 SHEET 4 AA4 5 ARG A 270 VAL A 275 1 N ARG A 270 O LEU A 324 SHEET 5 AA4 5 ILE A 278 LYS A 279 -1 O ILE A 278 N VAL A 275 SHEET 1 AA5 8 GLU B 155 GLU B 165 0 SHEET 2 AA5 8 LYS B 145 LYS B 152 -1 N ILE B 146 O GLY B 164 SHEET 3 AA5 8 SER B 133 ARG B 142 -1 N VAL B 140 O TYR B 147 SHEET 4 AA5 8 GLY B 170 PRO B 177 -1 O LYS B 172 N GLU B 139 SHEET 5 AA5 8 VAL B 75 ASP B 79 -1 N VAL B 77 O VAL B 173 SHEET 6 AA5 8 ASN B 64 ILE B 69 -1 N THR B 68 O THR B 76 SHEET 7 AA5 8 LYS B 207 ASP B 212 1 O GLU B 209 N VAL B 67 SHEET 8 AA5 8 LYS B 217 TYR B 221 -1 O LEU B 219 N LEU B 210 SHEET 1 AA6 5 ILE B 246 LYS B 252 0 SHEET 2 AA6 5 VAL B 255 TYR B 263 -1 O VAL B 257 N GLY B 250 SHEET 3 AA6 5 LEU B 324 LYS B 331 -1 O ALA B 329 N ASP B 258 SHEET 4 AA6 5 ARG B 270 VAL B 275 1 N ARG B 270 O LEU B 324 SHEET 5 AA6 5 ILE B 278 LYS B 279 -1 O ILE B 278 N VAL B 275 LINK OD1 ASN A 52 MG MG A 401 1555 1555 2.13 LINK MG MG A 401 O1A ANP A 402 1555 1555 2.17 LINK MG MG A 401 O3G ANP A 402 1555 1555 1.95 LINK MG MG A 401 O1B ANP A 402 1555 1555 2.13 LINK MG MG A 401 O HOH A 529 1555 1555 1.97 LINK MG MG A 401 O HOH A 565 1555 1555 2.21 LINK OD1 ASN B 52 MG MG B 401 1555 1555 2.10 LINK MG MG B 401 O3G ANP B 402 1555 1555 1.98 LINK MG MG B 401 O2B ANP B 402 1555 1555 2.15 LINK MG MG B 401 O2A ANP B 402 1555 1555 2.15 LINK MG MG B 401 O HOH B 517 1555 1555 2.05 LINK MG MG B 401 O HOH B 528 1555 1555 2.14 CRYST1 78.870 89.310 126.290 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012679 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007918 0.00000 CONECT 341 5663 CONECT 3229 5711 CONECT 5663 341 5667 5669 5673 CONECT 5663 5779 5815 CONECT 5664 5665 5666 5667 5671 CONECT 5665 5664 CONECT 5666 5664 CONECT 5667 5663 5664 CONECT 5668 5669 5670 5671 5675 CONECT 5669 5663 5668 CONECT 5670 5668 CONECT 5671 5664 5668 CONECT 5672 5673 5674 5675 5676 CONECT 5673 5663 5672 CONECT 5674 5672 CONECT 5675 5668 5672 CONECT 5676 5672 5677 CONECT 5677 5676 5678 CONECT 5678 5677 5679 5680 CONECT 5679 5678 5684 CONECT 5680 5678 5681 5682 CONECT 5681 5680 CONECT 5682 5680 5683 5684 CONECT 5683 5682 CONECT 5684 5679 5682 5685 CONECT 5685 5684 5686 5694 CONECT 5686 5685 5687 CONECT 5687 5686 5688 CONECT 5688 5687 5689 5694 CONECT 5689 5688 5690 5691 CONECT 5690 5689 CONECT 5691 5689 5692 CONECT 5692 5691 5693 CONECT 5693 5692 5694 CONECT 5694 5685 5688 5693 CONECT 5695 5696 CONECT 5696 5695 5697 5698 5699 CONECT 5697 5696 CONECT 5698 5696 CONECT 5699 5696 5700 CONECT 5700 5699 5701 5702 CONECT 5701 5700 CONECT 5702 5700 CONECT 5703 5704 CONECT 5704 5703 5705 5706 5707 CONECT 5705 5704 CONECT 5706 5704 CONECT 5707 5704 5708 CONECT 5708 5707 5709 5710 CONECT 5709 5708 CONECT 5710 5708 CONECT 5711 3229 5715 5718 5722 CONECT 5711 5956 5967 CONECT 5712 5713 5714 5715 5719 CONECT 5713 5712 CONECT 5714 5712 CONECT 5715 5711 5712 CONECT 5716 5717 5718 5719 5723 CONECT 5717 5716 CONECT 5718 5711 5716 CONECT 5719 5712 5716 CONECT 5720 5721 5722 5723 5724 CONECT 5721 5720 CONECT 5722 5711 5720 CONECT 5723 5716 5720 CONECT 5724 5720 5725 CONECT 5725 5724 5726 CONECT 5726 5725 5727 5728 CONECT 5727 5726 5732 CONECT 5728 5726 5729 5730 CONECT 5729 5728 CONECT 5730 5728 5731 5732 CONECT 5731 5730 CONECT 5732 5727 5730 5733 CONECT 5733 5732 5734 5742 CONECT 5734 5733 5735 CONECT 5735 5734 5736 CONECT 5736 5735 5737 5742 CONECT 5737 5736 5738 5739 CONECT 5738 5737 CONECT 5739 5737 5740 CONECT 5740 5739 5741 CONECT 5741 5740 5742 CONECT 5742 5733 5736 5741 CONECT 5743 5744 CONECT 5744 5743 5745 5746 5747 CONECT 5745 5744 CONECT 5746 5744 CONECT 5747 5744 5748 CONECT 5748 5747 5749 5750 CONECT 5749 5748 CONECT 5750 5748 CONECT 5779 5663 CONECT 5815 5663 CONECT 5956 5711 CONECT 5967 5711 MASTER 409 0 7 24 30 0 0 6 6031 2 96 62 END