HEADER HYDROLASE 19-FEB-26 23UV TITLE CRYSTAL STRUCTURE OF THE E48A VARIANT OF THE AQUIFEX AEOLICUS GYRB TITLE 2 ATPASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE 2 TOPOISOMERASE SUBUNIT B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA GYRASE SUBUNIT B; COMPND 5 EC: 5.6.2.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: THE ELECTRON DENSITY FOR THE N-TERMINAL 22 RESIDUES, COMPND 9 THE C-TERMINAL 10 RESIDUES, RESIDUES 114-117, RESIDUE 251, AND COMPND 10 RESIDUES 305-310 WAS NOT OBSERVED AND THEREFORE THESE REGIONS WERE COMPND 11 NOT MODELED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS VF5; SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 GENE: GYRB, AQ_1026; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS DNA GYRASE, GHKL ATPASE, HYPERTHERMOPHILE, AQUIFEX AEOLICUS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.FUKUI,T.MURAKAWA,T.YANO REVDAT 1 28-OCT-26 23UV 0 JRNL AUTH K.FUKUI,A.SHIBUYA,T.MURAKAWA,T.YANO JRNL TITL TWO GLU/ASP RESIDUES COOPERATIVELY MEDIATE AN EARLY STEP OF JRNL TITL 2 ATP HYDROLYSIS IN GHKL ATPASES MUTL AND GYRB. JRNL REF ELIFE V. 15 2026 JRNL REFN ESSN 2050-084X JRNL PMID 42788712 JRNL DOI 10.7554/ELIFE.111443 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.BEATTIE,A.VINOGRADOV,C.OKADA,T.SENGOKU,T.KATOH,H.SUGA REMARK 1 TITL IN VITRO SELECTION OF FUNCTIONAL NEOPROTEINS CONTAINING REMARK 1 TITL 2 HIGHLY FLUORINATED CORES. REMARK 1 REF ANGEW.CHEM.INT.ED.ENGL. 93145 2026 REMARK 1 REFN ESSN 1521-3773 REMARK 1 PMID 42745166 REMARK 1 DOI 10.1002/ANIE.5293145 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.480 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5400 - 6.4100 1.00 1501 158 0.2897 0.2838 REMARK 3 2 6.4100 - 5.0900 1.00 1410 147 0.2558 0.2408 REMARK 3 3 5.0900 - 4.4500 1.00 1383 145 0.1969 0.2173 REMARK 3 4 4.4500 - 4.0400 1.00 1369 143 0.1912 0.2002 REMARK 3 5 4.0400 - 3.7500 1.00 1369 144 0.2169 0.2415 REMARK 3 6 3.7500 - 3.5300 1.00 1352 141 0.2020 0.2494 REMARK 3 7 3.5300 - 3.3500 1.00 1347 142 0.2021 0.2565 REMARK 3 8 3.3500 - 3.2100 1.00 1358 142 0.2210 0.2632 REMARK 3 9 3.2100 - 3.0900 1.00 1340 141 0.2362 0.3207 REMARK 3 10 3.0800 - 2.9800 1.00 1347 141 0.2464 0.2857 REMARK 3 11 2.9800 - 2.8900 1.00 1342 140 0.2584 0.2747 REMARK 3 12 2.8900 - 2.8000 1.00 1327 139 0.2728 0.3248 REMARK 3 13 2.8000 - 2.7300 1.00 1340 139 0.3024 0.3548 REMARK 3 14 2.7300 - 2.6600 0.98 1302 137 0.3177 0.3909 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.367 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.828 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.031 2510 REMARK 3 ANGLE : 1.304 3420 REMARK 3 CHIRALITY : 0.069 409 REMARK 3 PLANARITY : 0.010 446 REMARK 3 DIHEDRAL : 15.385 830 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 23:385 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.406 -49.150 12.767 REMARK 3 T TENSOR REMARK 3 T11: 0.3967 T22: 0.5176 REMARK 3 T33: 0.5031 T12: 0.0289 REMARK 3 T13: 0.1415 T23: 0.1593 REMARK 3 L TENSOR REMARK 3 L11: 3.1230 L22: 1.1429 REMARK 3 L33: 1.4315 L12: 0.2957 REMARK 3 L13: 0.9942 L23: -0.3025 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: 0.5684 S13: 0.4787 REMARK 3 S21: -0.1836 S22: -0.0057 S23: 0.0053 REMARK 3 S31: -0.1099 S32: -0.0758 S33: 0.0220 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 23UV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-FEB-25. REMARK 100 THE DEPOSITION ID IS D_1300070466. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21090 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 49.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 14.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M CADMIUM SULFATE HYDRATE, 0.1 M REMARK 280 HEPES PH 7.5, 20% (W/V) POLYETHYLENE GLYCOL 3,350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.01067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.02133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.01067 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.02133 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.01067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 54.02133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 27.01067 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 54.02133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 519 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 GLN A 5 REMARK 465 SER A 6 REMARK 465 GLN A 7 REMARK 465 THR A 8 REMARK 465 PRO A 9 REMARK 465 GLN A 10 REMARK 465 GLU A 11 REMARK 465 TYR A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 GLU A 15 REMARK 465 ALA A 16 REMARK 465 ILE A 17 REMARK 465 LYS A 18 REMARK 465 ALA A 19 REMARK 465 VAL A 20 REMARK 465 HIS A 122 REMARK 465 GLY A 250 REMARK 465 GLU A 251 REMARK 465 LYS A 252 REMARK 465 GLU A 253 REMARK 465 LYS A 265 REMARK 465 ASP A 266 REMARK 465 TYR A 267 REMARK 465 ALA A 308 REMARK 465 LYS A 309 REMARK 465 GLU A 310 REMARK 465 LEU A 311 REMARK 465 LYS A 312 REMARK 465 ALA A 386 REMARK 465 ARG A 387 REMARK 465 GLU A 388 REMARK 465 ALA A 389 REMARK 465 ALA A 390 REMARK 465 LYS A 391 REMARK 465 LYS A 392 REMARK 465 ALA A 393 REMARK 465 LYS A 394 REMARK 465 GLU A 395 REMARK 465 LEU A 396 REMARK 465 VAL A 397 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 29 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 88 CG1 CG2 CD1 REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 THR A 92 OG1 CG2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 PHE A 110 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 VAL A 114 CG1 CG2 REMARK 470 SER A 118 OG REMARK 470 LEU A 121 CG CD1 CD2 REMARK 470 LYS A 152 CE NZ REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 ASP A 190 CG OD1 OD2 REMARK 470 GLU A 205 CD OE1 OE2 REMARK 470 ARG A 225 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 LYS A 238 CD CE NZ REMARK 470 GLU A 239 CG CD OE1 OE2 REMARK 470 LEU A 241 CG CD1 CD2 REMARK 470 PHE A 242 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 ASP A 244 CG OD1 OD2 REMARK 470 ILE A 248 CG1 CG2 CD1 REMARK 470 ILE A 256 CG1 CG2 CD1 REMARK 470 VAL A 257 CG1 CG2 REMARK 470 VAL A 264 CG1 CG2 REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 GLU A 269 OE1 OE2 REMARK 470 ARG A 270 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 VAL A 281 CG1 CG2 REMARK 470 GLU A 282 CG CD OE1 OE2 REMARK 470 THR A 288 OG1 CG2 REMARK 470 ARG A 291 CZ NH1 NH2 REMARK 470 SER A 292 OG REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 ARG A 300 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 305 CG CD1 CD2 REMARK 470 LYS A 306 CG CD CE NZ REMARK 470 LEU A 307 CG CD1 CD2 REMARK 470 LYS A 313 CG CD CE NZ REMARK 470 THR A 316 OG1 CG2 REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 ASP A 319 CG OD1 OD2 REMARK 470 VAL A 320 CG1 CG2 REMARK 470 ARG A 321 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 322 CG CD OE1 OE2 REMARK 470 CYS A 330 SG REMARK 470 LYS A 331 CE NZ REMARK 470 VAL A 332 CG1 CG2 REMARK 470 ASN A 334 CG OD1 ND2 REMARK 470 GLN A 336 CG CD OE1 NE2 REMARK 470 PHE A 337 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 338 CG CD OE1 OE2 REMARK 470 GLN A 340 CG CD OE1 NE2 REMARK 470 THR A 341 OG1 CG2 REMARK 470 LYS A 342 CG CD CE NZ REMARK 470 LYS A 344 CG CD CE NZ REMARK 470 GLN A 348 CG CD OE1 NE2 REMARK 470 ASN A 349 CG OD1 ND2 REMARK 470 VAL A 350 CG1 CG2 REMARK 470 LYS A 351 CG CD CE NZ REMARK 470 GLN A 352 CG CD OE1 NE2 REMARK 470 ILE A 353 CG1 CG2 CD1 REMARK 470 GLU A 355 CG CD OE1 OE2 REMARK 470 SER A 356 OG REMARK 470 TYR A 359 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 360 CG OD1 OD2 REMARK 470 PHE A 361 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 363 OG1 CG2 REMARK 470 SER A 364 OG REMARK 470 TYR A 365 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 367 CG CD OE1 OE2 REMARK 470 LYS A 368 CG CD CE NZ REMARK 470 LYS A 369 CG CD CE NZ REMARK 470 ARG A 370 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 371 CG OD1 OD2 REMARK 470 LYS A 374 CG CD CE NZ REMARK 470 ILE A 376 CG1 CG2 CD1 REMARK 470 GLU A 378 CG CD OE1 OE2 REMARK 470 LYS A 379 CG CD CE NZ REMARK 470 GLU A 382 CG CD OE1 OE2 REMARK 470 LEU A 385 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 320 27.44 -73.06 REMARK 500 ASN A 334 74.41 47.71 REMARK 500 GLN A 336 72.42 -114.38 REMARK 500 LYS A 368 -71.28 -91.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 401 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 51 OD1 REMARK 620 2 ASP A 51 OD2 49.6 REMARK 620 3 ASP A 55 OD1 68.2 81.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 406 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 70 ND1 REMARK 620 2 GLU A 165 OE1 77.3 REMARK 620 3 GLU A 213 OE1 99.7 143.6 REMARK 620 4 HOH A 507 O 126.1 139.1 71.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 404 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 158 OE2 REMARK 620 2 HIS A 161 NE2 51.8 REMARK 620 N 1 DBREF 23UV A 1 397 UNP O67137 TOP4B_AQUAE 1 397 SEQADV 23UV ALA A 48 UNP O67137 GLU 48 VARIANT SEQRES 1 A 397 MET LYS LYS ARG GLN SER GLN THR PRO GLN GLU TYR THR SEQRES 2 A 397 ALA GLU ALA ILE LYS ALA VAL SER GLY LEU GLU HIS VAL SEQRES 3 A 397 ARG LEU ARG PRO ALA MET TYR ILE GLY ASP ILE GLY GLU SEQRES 4 A 397 ARG GLY LEU HIS HIS LEU ILE TRP ALA ILE LEU ASP ASN SEQRES 5 A 397 ALA VAL ASP GLU ALA VAL ALA GLY TYR ALA ARG ASN ILE SEQRES 6 A 397 SER VAL THR ILE HIS ARG ASP ASN SER VAL THR VAL GLU SEQRES 7 A 397 ASP ASP GLY ARG GLY ILE PRO VAL ASP ILE HIS PRO GLU SEQRES 8 A 397 THR GLY LYS PRO ALA VAL GLU MET VAL PHE THR MET LEU SEQRES 9 A 397 GLY ALA GLY GLY LYS PHE GLU LYS LYS VAL TYR THR TYR SEQRES 10 A 397 SER GLY GLY LEU HIS GLY VAL GLY ALA SER VAL VAL ASN SEQRES 11 A 397 ALA LEU SER GLU TRP LEU ILE VAL GLU VAL TYR ARG ASP SEQRES 12 A 397 GLY LYS ILE TYR ARG MET ALA PHE LYS ARG GLY GLU VAL SEQRES 13 A 397 VAL GLU PRO LEU HIS VAL VAL GLY GLU THR LYS LYS ARG SEQRES 14 A 397 GLY THR LYS VAL SER PHE LYS PRO ASP PRO GLU ILE PHE SEQRES 15 A 397 GLU THR THR GLU ILE LYS PHE ASP ILE VAL GLU LYS ARG SEQRES 16 A 397 VAL ARG GLU LEU ALA TYR LEU ASN PRO GLU VAL LYS PHE SEQRES 17 A 397 GLU LEU THR ASP GLU ARG LEU GLY LYS HIS LEU ILE TYR SEQRES 18 A 397 LYS PHE ASP ARG GLY ILE GLU GLU LEU VAL LYS TYR LEU SEQRES 19 A 397 ASN GLU GLY LYS GLU PRO LEU PHE LYS ASP ILE ILE ARG SEQRES 20 A 397 ILE GLN GLY GLU LYS GLU GLY VAL ILE VAL ASP ILE ALA SEQRES 21 A 397 PHE GLN TYR VAL LYS ASP TYR LYS GLU ARG ILE GLU SER SEQRES 22 A 397 PHE VAL ASN ASN ILE LYS THR VAL GLU GLY GLY THR HIS SEQRES 23 A 397 VAL THR GLY PHE ARG SER GLY LEU SER LYS ALA VAL ILE SEQRES 24 A 397 ARG MET ALA GLN GLY LEU LYS LEU ALA LYS GLU LEU LYS SEQRES 25 A 397 LYS SER PHE THR GLY GLU ASP VAL ARG GLU GLY LEU THR SEQRES 26 A 397 ALA VAL VAL ALA CYS LYS VAL PRO ASN PRO GLN PHE GLU SEQRES 27 A 397 GLY GLN THR LYS THR LYS LEU GLY ASN GLN ASN VAL LYS SEQRES 28 A 397 GLN ILE VAL GLU SER ILE THR TYR ASP PHE LEU THR SER SEQRES 29 A 397 TYR PHE GLU LYS LYS ARG ASP VAL LEU LYS ALA ILE VAL SEQRES 30 A 397 GLU LYS ALA ILE GLU ALA ALA LEU ALA ARG GLU ALA ALA SEQRES 31 A 397 LYS LYS ALA LYS GLU LEU VAL HET CD A 401 1 HET CD A 402 1 HET CD A 403 1 HET CD A 404 1 HET CD A 405 1 HET CD A 406 1 HET CD A 407 1 HET CD A 408 1 HET CD A 409 1 HET CD A 410 1 HET CD A 411 1 HETNAM CD CADMIUM ION FORMUL 2 CD 11(CD 2+) FORMUL 13 HOH *21(H2 O) HELIX 1 AA1 SER A 21 ARG A 29 1 9 HELIX 2 AA2 PRO A 30 GLY A 35 1 6 HELIX 3 AA3 GLY A 38 ALA A 59 1 22 HELIX 4 AA4 PRO A 95 MET A 103 1 9 HELIX 5 AA5 GLY A 105 TYR A 115 1 11 HELIX 6 AA6 GLY A 125 LEU A 132 1 8 HELIX 7 AA7 LYS A 188 ASN A 203 1 16 HELIX 8 AA8 GLY A 226 ASN A 235 1 10 HELIX 9 AA9 GLY A 284 GLN A 303 1 20 HELIX 10 AB1 ASN A 347 LYS A 369 1 23 HELIX 11 AB2 LYS A 369 LEU A 385 1 17 SHEET 1 AA1 8 GLU A 155 GLU A 165 0 SHEET 2 AA1 8 LYS A 145 LYS A 152 -1 N LYS A 152 O GLU A 155 SHEET 3 AA1 8 SER A 133 ARG A 142 -1 N LEU A 136 O PHE A 151 SHEET 4 AA1 8 GLY A 170 PRO A 177 -1 O GLY A 170 N TYR A 141 SHEET 5 AA1 8 VAL A 75 ASP A 79 -1 N VAL A 75 O PHE A 175 SHEET 6 AA1 8 ASN A 64 ILE A 69 -1 N THR A 68 O THR A 76 SHEET 7 AA1 8 LYS A 207 ASP A 212 1 O THR A 211 N ILE A 69 SHEET 8 AA1 8 LYS A 217 TYR A 221 -1 O TYR A 221 N PHE A 208 SHEET 1 AA2 5 ILE A 246 ILE A 248 0 SHEET 2 AA2 5 ILE A 256 TYR A 263 -1 O ILE A 259 N ILE A 248 SHEET 3 AA2 5 LEU A 324 LYS A 331 -1 O LYS A 331 N ILE A 256 SHEET 4 AA2 5 ARG A 270 VAL A 275 1 N ARG A 270 O LEU A 324 SHEET 5 AA2 5 ILE A 278 LYS A 279 -1 O ILE A 278 N VAL A 275 LINK OE2 GLU A 24 CD CD A 410 1555 1555 2.67 LINK NE2 HIS A 44 CD CD A 411 1555 1555 2.70 LINK OD1 ASP A 51 CD CD A 401 1555 1555 2.62 LINK OD2 ASP A 51 CD CD A 401 1555 1555 2.64 LINK OD1 ASP A 55 CD CD A 401 1555 1555 2.68 LINK ND1 HIS A 70 CD CD A 406 1555 1555 2.57 LINK OE2 GLU A 158 CD CD A 404 1555 12545 2.50 LINK NE2 HIS A 161 CD CD A 404 1555 1555 2.41 LINK OE1 GLU A 165 CD CD A 406 1555 12545 2.56 LINK OE1 GLU A 213 CD CD A 406 1555 1555 2.60 LINK ND1 HIS A 218 CD CD A 402 1555 1555 2.64 LINK CD CD A 406 O HOH A 507 1555 1555 2.50 CRYST1 173.683 173.683 81.032 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005758 0.003324 0.000000 0.00000 SCALE2 0.000000 0.006648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012341 0.00000 CONECT 27 2480 CONECT 178 2481 CONECT 236 2471 CONECT 237 2471 CONECT 264 2471 CONECT 374 2476 CONECT 1026 2474 CONECT 1441 2476 CONECT 1481 2472 CONECT 2471 236 237 264 CONECT 2472 1481 CONECT 2474 1026 CONECT 2476 374 1441 2488 CONECT 2480 27 CONECT 2481 178 CONECT 2488 2476 MASTER 462 0 11 11 13 0 0 6 2501 1 16 31 END