HEADER OXIDOREDUCTASE 30-JAN-26 23AL TITLE CRYSTAL STRUCTURE OF EXTRADIOL DIOXYGENASE (EDO4) IN COMPLEX WITH 2- TITLE 2 HYDROXYBIPHENYL COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYOXALASE/BLEOMYCIN RESISTANCE PROTEIN/DIOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZORHABDUS WITTICHII RW1; SOURCE 3 ORGANISM_TAXID: 392499; SOURCE 4 STRAIN: RW1; SOURCE 5 GENE: SWIT_3046; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS EXTRADIOL DIOXYGENASE, RING CLEAVING DIOXYGENASE, OXIDOREDUCTASE, 2- KEYWDS 2 HYDROXYBIPHENYL EXPDTA X-RAY DIFFRACTION AUTHOR A.KAYASTHA,K.JANGID,P.KUMAR REVDAT 1 08-JUL-26 23AL 0 JRNL AUTH A.KAYASTHA,K.JANGID,S.VERMA,A.RANA,P.KUMAR JRNL TITL STRUCTURAL AND MECHANISTIC INSIGHTS INTO EDO4, AN EXTRADIOL JRNL TITL 2 DIOXYGENASE IN DIOXIN DEGRADATION. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 782 10878 2026 JRNL REFN ESSN 1096-0384 JRNL PMID 42178006 JRNL DOI 10.1016/J.ABB.2026.110878 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0431 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 18049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 924 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1270 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4579 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : 0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.362 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.268 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.819 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.904 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.863 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4749 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4369 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6411 ; 1.653 ; 1.815 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10024 ; 0.614 ; 1.766 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 579 ; 8.337 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 48 ;13.650 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 734 ;17.821 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 667 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5744 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1180 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2328 ; 0.790 ; 1.084 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2328 ; 0.790 ; 1.084 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2903 ; 1.422 ; 1.939 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2904 ; 1.422 ; 1.939 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2421 ; 0.794 ; 1.199 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2422 ; 0.794 ; 1.199 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3509 ; 1.312 ; 2.145 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4927 ; 3.005 ; 9.980 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4926 ; 2.999 ; 9.980 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 297 REMARK 3 RESIDUE RANGE : A 301 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): 19.976 -4.262 57.974 REMARK 3 T TENSOR REMARK 3 T11: 0.0256 T22: 0.0935 REMARK 3 T33: 0.0498 T12: -0.0070 REMARK 3 T13: 0.0159 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 1.3358 L22: 1.9065 REMARK 3 L33: 1.5010 L12: -0.0371 REMARK 3 L13: 0.2561 L23: -0.0845 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.0246 S13: -0.1122 REMARK 3 S21: 0.0380 S22: 0.0330 S23: 0.2575 REMARK 3 S31: 0.0683 S32: -0.1933 S33: -0.0338 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 297 REMARK 3 RESIDUE RANGE : B 301 B 305 REMARK 3 ORIGIN FOR THE GROUP (A): 23.712 15.772 18.780 REMARK 3 T TENSOR REMARK 3 T11: 0.2430 T22: 0.2638 REMARK 3 T33: 0.0493 T12: -0.0075 REMARK 3 T13: -0.0635 T23: 0.0494 REMARK 3 L TENSOR REMARK 3 L11: 1.2850 L22: 1.5635 REMARK 3 L33: 2.3249 L12: -0.1483 REMARK 3 L13: -0.3368 L23: -0.1613 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: 0.2018 S13: 0.1599 REMARK 3 S21: -0.2308 S22: 0.0250 S23: 0.0848 REMARK 3 S31: -0.3279 S32: -0.0550 S33: -0.0719 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 23AL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JAN-26. REMARK 100 THE DEPOSITION ID IS D_1300069571. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18973 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.18790 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.60190 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PLATE SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG4000, 20% V/V GLYCEROL, REMARK 280 0.03 M HALOGENS, AND 0.1 M BICINE/TRIZMA BASE (PH 8.5), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.38500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.38500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.38500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.38500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.38500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.38500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.38500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.38500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 83780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 98.77000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 49.38500 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -49.38500 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 49.38500 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 49.38500 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 183 REMARK 465 ASN A 184 REMARK 465 GLY A 185 REMARK 465 ILE A 186 REMARK 465 HIS A 298 REMARK 465 MET B 1 REMARK 465 PRO B 181 REMARK 465 MET B 182 REMARK 465 PRO B 183 REMARK 465 ASN B 184 REMARK 465 GLY B 185 REMARK 465 ILE B 186 REMARK 465 HIS B 298 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 260 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 46.68 -79.61 REMARK 500 SER A 5 -62.36 -100.70 REMARK 500 ARG A 39 -74.26 -111.41 REMARK 500 ASP A 46 -153.47 -164.05 REMARK 500 ARG A 51 -50.56 -130.18 REMARK 500 ASP A 57 39.66 -149.03 REMARK 500 ASP A 61 171.68 176.66 REMARK 500 THR A 142 -98.76 -129.94 REMARK 500 SER B 5 -63.84 -100.65 REMARK 500 ARG B 39 -79.66 -115.01 REMARK 500 ASP B 46 -154.20 -162.73 REMARK 500 ARG B 51 -49.83 -130.50 REMARK 500 ASP B 57 -69.60 -159.40 REMARK 500 VAL B 135 -17.76 -140.43 REMARK 500 THR B 142 -102.35 -131.24 REMARK 500 SER B 173 -66.84 -91.32 REMARK 500 ASP B 188 -72.45 -81.16 REMARK 500 ASP B 280 56.93 -150.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE B 187 ASP B 188 149.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 56 0.11 SIDE CHAIN REMARK 500 ARG A 90 0.10 SIDE CHAIN REMARK 500 ARG A 155 0.08 SIDE CHAIN REMARK 500 ARG B 90 0.09 SIDE CHAIN REMARK 500 ARG B 177 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 149 NE2 REMARK 620 2 HIS A 217 NE2 102.1 REMARK 620 3 GLU A 268 OE1 98.1 84.9 REMARK 620 4 CH9 A 302 OAA 175.8 76.7 77.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 149 NE2 REMARK 620 2 HIS B 217 NE2 89.7 REMARK 620 3 GLU B 268 OE1 97.8 83.8 REMARK 620 4 CH9 B 302 OAA 149.2 72.6 104.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9X2G RELATED DB: PDB DBREF1 23AL A 1 298 UNP A0A9J9LFP0_RHIWR DBREF2 23AL A A0A9J9LFP0 1 298 DBREF1 23AL B 1 298 UNP A0A9J9LFP0_RHIWR DBREF2 23AL B A0A9J9LFP0 1 298 SEQRES 1 A 298 MET SER GLU ILE SER SER LEU GLY TYR VAL GLY TYR SER SEQRES 2 A 298 VAL THR ASP LEU ASP ARG TRP GLU GLU LEU ALA VAL ASP SEQRES 3 A 298 ILE LEU GLY PHE VAL PRO GLY ARG ARG ASN PRO GLY ARG SEQRES 4 A 298 SER LEU GLY LEU ARG MET ASP LYS LEU GLU GLN ARG ILE SEQRES 5 A 298 VAL LEU GLU ARG ASP GLY LYS ASP ASP LEU LYS TYR VAL SEQRES 6 A 298 GLY TRP LEU PHE ASP THR GLU ASP ASP LEU ASP GLY PHE SEQRES 7 A 298 VAL ASP LYS ALA ARG GLY ALA GLY VAL ASP ILE ARG PRO SEQRES 8 A 298 GLN SER ALA GLU ILE ALA LYS GLN ARG ALA VAL ASP ARG SEQRES 9 A 298 VAL HIS ALA VAL THR ASP PRO ASN GLY VAL ILE HIS GLU SEQRES 10 A 298 PHE ALA PHE GLY PRO LYS PHE ALA SER ALA HIS GLU PRO SEQRES 11 A 298 PHE LEU SER LYS VAL LEU ARG GLY GLY PHE VAL THR GLY SEQRES 12 A 298 ARG LEU GLY VAL GLY HIS VAL LEU GLU VAL ALA ARG ASP SEQRES 13 A 298 TYR GLY GLU THR VAL ALA PHE ALA ARG ARG VAL LEU GLY SEQRES 14 A 298 LEU LYS VAL SER ASP TYR ILE ARG GLY PRO GLN PRO MET SEQRES 15 A 298 PRO ASN GLY ILE PHE ASP VAL GLU ALA ALA PHE PHE HIS SEQRES 16 A 298 THR ARG THR GLY ARG HIS HIS SER LEU ALA THR ALA GLU SEQRES 17 A 298 VAL PRO THR PRO LEU ARG ILE HIS HIS MET MET VAL GLU SEQRES 18 A 298 VAL SER ASP MET ASP ASP VAL GLY LEU ALA TYR ASP ARG SEQRES 19 A 298 CYS ARG ALA ALA GLY PHE PRO ILE GLY MET GLU LEU GLY SEQRES 20 A 298 HIS HIS PRO ASN ASP GLY MET PHE SER PHE TYR VAL ARG SEQRES 21 A 298 THR PRO SER GLY PHE LEU ILE GLU PHE GLY TRP GLY GLY SEQRES 22 A 298 VAL VAL ILE ASP ASP ALA ASP TRP GLU VAL LYS THR TYR SEQRES 23 A 298 SER GLN LEU SER ASP TRP GLY HIS ALA HIS ALA HIS SEQRES 1 B 298 MET SER GLU ILE SER SER LEU GLY TYR VAL GLY TYR SER SEQRES 2 B 298 VAL THR ASP LEU ASP ARG TRP GLU GLU LEU ALA VAL ASP SEQRES 3 B 298 ILE LEU GLY PHE VAL PRO GLY ARG ARG ASN PRO GLY ARG SEQRES 4 B 298 SER LEU GLY LEU ARG MET ASP LYS LEU GLU GLN ARG ILE SEQRES 5 B 298 VAL LEU GLU ARG ASP GLY LYS ASP ASP LEU LYS TYR VAL SEQRES 6 B 298 GLY TRP LEU PHE ASP THR GLU ASP ASP LEU ASP GLY PHE SEQRES 7 B 298 VAL ASP LYS ALA ARG GLY ALA GLY VAL ASP ILE ARG PRO SEQRES 8 B 298 GLN SER ALA GLU ILE ALA LYS GLN ARG ALA VAL ASP ARG SEQRES 9 B 298 VAL HIS ALA VAL THR ASP PRO ASN GLY VAL ILE HIS GLU SEQRES 10 B 298 PHE ALA PHE GLY PRO LYS PHE ALA SER ALA HIS GLU PRO SEQRES 11 B 298 PHE LEU SER LYS VAL LEU ARG GLY GLY PHE VAL THR GLY SEQRES 12 B 298 ARG LEU GLY VAL GLY HIS VAL LEU GLU VAL ALA ARG ASP SEQRES 13 B 298 TYR GLY GLU THR VAL ALA PHE ALA ARG ARG VAL LEU GLY SEQRES 14 B 298 LEU LYS VAL SER ASP TYR ILE ARG GLY PRO GLN PRO MET SEQRES 15 B 298 PRO ASN GLY ILE PHE ASP VAL GLU ALA ALA PHE PHE HIS SEQRES 16 B 298 THR ARG THR GLY ARG HIS HIS SER LEU ALA THR ALA GLU SEQRES 17 B 298 VAL PRO THR PRO LEU ARG ILE HIS HIS MET MET VAL GLU SEQRES 18 B 298 VAL SER ASP MET ASP ASP VAL GLY LEU ALA TYR ASP ARG SEQRES 19 B 298 CYS ARG ALA ALA GLY PHE PRO ILE GLY MET GLU LEU GLY SEQRES 20 B 298 HIS HIS PRO ASN ASP GLY MET PHE SER PHE TYR VAL ARG SEQRES 21 B 298 THR PRO SER GLY PHE LEU ILE GLU PHE GLY TRP GLY GLY SEQRES 22 B 298 VAL VAL ILE ASP ASP ALA ASP TRP GLU VAL LYS THR TYR SEQRES 23 B 298 SER GLN LEU SER ASP TRP GLY HIS ALA HIS ALA HIS HET FE2 A 301 1 HET CH9 A 302 13 HET EDO A 303 4 HET PEG A 304 7 HET FE2 B 301 1 HET CH9 B 302 13 HET PEG B 303 7 HET PEG B 304 7 HET EDO B 305 4 HETNAM FE2 FE (II) ION HETNAM CH9 2-HYDROXYBIPHENYL HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN CH9 1,1'-BIPHENYL-2-OL; 2-PHENYLPHENOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 FE2 2(FE 2+) FORMUL 4 CH9 2(C12 H10 O) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 6 PEG 3(C4 H10 O3) FORMUL 12 HOH *31(H2 O) HELIX 1 AA1 ASP A 16 ILE A 27 1 12 HELIX 2 AA2 THR A 71 ALA A 85 1 15 HELIX 3 AA3 SER A 93 ARG A 100 1 8 HELIX 4 AA4 THR A 142 GLY A 146 5 5 HELIX 5 AA5 ASP A 156 VAL A 167 1 12 HELIX 6 AA6 ASP A 224 ALA A 238 1 15 HELIX 7 AA7 ASP A 277 TRP A 281 5 5 HELIX 8 AA8 ASP B 16 ILE B 27 1 12 HELIX 9 AA9 THR B 71 ALA B 85 1 15 HELIX 10 AB1 SER B 93 ALA B 101 1 9 HELIX 11 AB2 THR B 142 GLY B 146 5 5 HELIX 12 AB3 ASP B 156 VAL B 167 1 12 HELIX 13 AB4 ASP B 224 ALA B 238 1 15 HELIX 14 AB5 ASP B 277 TRP B 281 5 5 SHEET 1 AA1 8 VAL A 31 ASN A 36 0 SHEET 2 AA1 8 SER A 40 ARG A 44 -1 O ARG A 44 N VAL A 31 SHEET 3 AA1 8 ILE A 52 ARG A 56 -1 O LEU A 54 N LEU A 41 SHEET 4 AA1 8 SER A 6 VAL A 14 1 N TYR A 12 O GLU A 55 SHEET 5 AA1 8 ASP A 61 PHE A 69 -1 O GLY A 66 N TYR A 9 SHEET 6 AA1 8 ILE A 115 PHE A 120 1 O GLU A 117 N VAL A 65 SHEET 7 AA1 8 ARG A 104 THR A 109 -1 N HIS A 106 O PHE A 118 SHEET 8 AA1 8 ARG A 90 PRO A 91 -1 N ARG A 90 O ALA A 107 SHEET 1 AA210 THR A 285 TYR A 286 0 SHEET 2 AA210 LYS A 171 PRO A 179 1 N ARG A 177 O TYR A 286 SHEET 3 AA210 ASP A 188 HIS A 195 -1 O PHE A 193 N SER A 173 SHEET 4 AA210 LEU A 204 ALA A 207 -1 O LEU A 204 N PHE A 194 SHEET 5 AA210 HIS A 149 VAL A 153 1 N GLU A 152 O ALA A 205 SHEET 6 AA210 ILE A 215 GLU A 221 -1 O MET A 219 N HIS A 149 SHEET 7 AA210 LEU A 266 TRP A 271 1 O GLU A 268 N MET A 218 SHEET 8 AA210 PHE A 255 ARG A 260 -1 N PHE A 257 O PHE A 269 SHEET 9 AA210 ILE A 242 HIS A 248 -1 N GLY A 247 O SER A 256 SHEET 10 AA210 TRP A 292 GLY A 293 -1 O TRP A 292 N HIS A 248 SHEET 1 AA3 8 VAL B 31 ASN B 36 0 SHEET 2 AA3 8 SER B 40 ARG B 44 -1 O ARG B 44 N VAL B 31 SHEET 3 AA3 8 ILE B 52 GLU B 55 -1 O ILE B 52 N LEU B 43 SHEET 4 AA3 8 SER B 6 SER B 13 1 N TYR B 12 O GLU B 55 SHEET 5 AA3 8 ASP B 61 PHE B 69 -1 O GLY B 66 N TYR B 9 SHEET 6 AA3 8 ILE B 115 PHE B 120 1 O GLU B 117 N VAL B 65 SHEET 7 AA3 8 ARG B 104 THR B 109 -1 N HIS B 106 O PHE B 118 SHEET 8 AA3 8 ARG B 90 PRO B 91 -1 N ARG B 90 O ALA B 107 SHEET 1 AA410 THR B 285 TYR B 286 0 SHEET 2 AA410 LYS B 171 GLY B 178 1 N ARG B 177 O TYR B 286 SHEET 3 AA410 VAL B 189 HIS B 195 -1 O PHE B 193 N SER B 173 SHEET 4 AA410 LEU B 204 ALA B 207 -1 O LEU B 204 N PHE B 194 SHEET 5 AA410 HIS B 149 VAL B 153 1 N GLU B 152 O ALA B 205 SHEET 6 AA410 ILE B 215 VAL B 222 -1 O HIS B 217 N LEU B 151 SHEET 7 AA410 LEU B 266 TRP B 271 1 O GLU B 268 N MET B 218 SHEET 8 AA410 PHE B 255 ARG B 260 -1 N PHE B 257 O PHE B 269 SHEET 9 AA410 ILE B 242 HIS B 248 -1 N GLY B 247 O SER B 256 SHEET 10 AA410 TRP B 292 GLY B 293 -1 O TRP B 292 N HIS B 248 LINK NE2 HIS A 149 FE FE2 A 301 1555 1555 2.17 LINK NE2 HIS A 217 FE FE2 A 301 1555 1555 2.50 LINK OE1 GLU A 268 FE FE2 A 301 1555 1555 2.40 LINK FE FE2 A 301 OAA CH9 A 302 1555 1555 2.01 LINK NE2 HIS B 149 FE FE2 B 301 1555 1555 2.36 LINK NE2 HIS B 217 FE FE2 B 301 1555 1555 2.62 LINK OE1 GLU B 268 FE FE2 B 301 1555 1555 2.26 LINK FE FE2 B 301 OAA CH9 B 302 1555 1555 1.96 CRYST1 98.770 98.770 152.983 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010125 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010125 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006537 0.00000 CONECT 1163 4582 CONECT 1675 4582 CONECT 2069 4582 CONECT 3457 4607 CONECT 3954 4607 CONECT 4348 4607 CONECT 4582 1163 1675 2069 4595 CONECT 4583 4584 4588 CONECT 4584 4583 4585 CONECT 4585 4584 4586 CONECT 4586 4585 4587 CONECT 4587 4586 4588 CONECT 4588 4583 4587 4589 CONECT 4589 4588 4590 4594 CONECT 4590 4589 4591 CONECT 4591 4590 4592 CONECT 4592 4591 4593 CONECT 4593 4592 4594 CONECT 4594 4589 4593 4595 CONECT 4595 4582 4594 CONECT 4596 4597 4598 CONECT 4597 4596 CONECT 4598 4596 4599 CONECT 4599 4598 CONECT 4600 4601 4602 CONECT 4601 4600 CONECT 4602 4600 4603 CONECT 4603 4602 4604 CONECT 4604 4603 4605 CONECT 4605 4604 4606 CONECT 4606 4605 CONECT 4607 3457 3954 4348 4620 CONECT 4608 4609 4613 CONECT 4609 4608 4610 CONECT 4610 4609 4611 CONECT 4611 4610 4612 CONECT 4612 4611 4613 CONECT 4613 4608 4612 4614 CONECT 4614 4613 4615 4619 CONECT 4615 4614 4616 CONECT 4616 4615 4617 CONECT 4617 4616 4618 CONECT 4618 4617 4619 CONECT 4619 4614 4618 4620 CONECT 4620 4607 4619 CONECT 4621 4622 4623 CONECT 4622 4621 CONECT 4623 4621 4624 CONECT 4624 4623 4625 CONECT 4625 4624 4626 CONECT 4626 4625 4627 CONECT 4627 4626 CONECT 4628 4629 4630 CONECT 4629 4628 CONECT 4630 4628 4631 CONECT 4631 4630 4632 CONECT 4632 4631 4633 CONECT 4633 4632 4634 CONECT 4634 4633 CONECT 4635 4636 4637 CONECT 4636 4635 CONECT 4637 4635 4638 CONECT 4638 4637 MASTER 434 0 9 14 36 0 0 6 4667 2 63 46 END