data_23KA # _entry.id 23KA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.413 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 23KA pdb_000023ka 10.2210/pdb23ka/pdb WWPDB D_1300070025 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-05-06 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 23KA _pdbx_database_status.recvd_initial_deposition_date 2026-02-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email j.kondo@sophia.ac.jp _pdbx_contact_author.name_first Jiro _pdbx_contact_author.name_last Kondo _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5682-3685 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kondo, J.' 1 0000-0002-5682-3685 'Okada, M.' 2 ? 'Tsuzuki, K.' 3 ? 'Onizuka, K.' 4 ? 'Nagasawa, R.' 5 ? 'Miyashita, E.' 6 ? 'Komatsu, K.R.' 7 ? 'Saito, H.' 8 ? 'Nagatsugi, F.' 9 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Rsc Chem Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2633-0679 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'RNA-binding Landscape of Amiloride: Large-scale Profiling and Structural Basis of U-U Mismatch Recognition' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/D6CB00055J _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tsuzuki, K.' 1 ? primary 'Onizuka, K.' 2 ? primary 'Okada, M.' 3 ? primary 'Nagasawa, R.' 4 ? primary 'Miyashita, E.' 5 ? primary 'Komatsu, K.R.' 6 ? primary 'Saito, H.' 7 ? primary 'Kondo, J.' 8 ? primary 'Nagatsugi, F.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (35-MER)' 11285.740 3 ? ? ? ? 2 non-polymer syn '3,5-DIAMINO-N-(AMINOIMINOMETHYL)-6-CHLOROPYRAZINECARBOXAMIDE' 229.627 3 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 4 non-polymer syn 'CACODYLIC ACID' 137.997 1 ? ? ? ? 5 water nat water 18.015 39 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCUUGCUCUAAGGCAUGAAAGUGCUAUGAGAUAGC _entity_poly.pdbx_seq_one_letter_code_can GCUUGCUCUAAGGCAUGAAAGUGCUAUGAGAUAGC _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '3,5-DIAMINO-N-(AMINOIMINOMETHYL)-6-CHLOROPYRAZINECARBOXAMIDE' AMR 3 'SODIUM ION' NA 4 'CACODYLIC ACID' CAD 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 U n 1 4 U n 1 5 G n 1 6 C n 1 7 U n 1 8 C n 1 9 U n 1 10 A n 1 11 A n 1 12 G n 1 13 G n 1 14 C n 1 15 A n 1 16 U n 1 17 G n 1 18 A n 1 19 A n 1 20 A n 1 21 G n 1 22 U n 1 23 G n 1 24 C n 1 25 U n 1 26 A n 1 27 U n 1 28 G n 1 29 A n 1 30 G n 1 31 A n 1 32 U n 1 33 A n 1 34 G n 1 35 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 35 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 AMR non-polymer . '3,5-DIAMINO-N-(AMINOIMINOMETHYL)-6-CHLOROPYRAZINECARBOXAMIDE' AMILORIDE 'C6 H8 Cl N7 O' 229.627 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CAD non-polymer . 'CACODYLIC ACID' 'HYDROXYDIMETHYLARSINE OXIDE' 'C2 H7 As O2' 137.997 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 U 3 3 3 U U A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 C 8 8 8 C C A . n A 1 9 U 9 9 9 U U A . n A 1 10 A 10 10 10 A A A . n A 1 11 A 11 11 11 A A A . n A 1 12 G 12 12 12 G G A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 A 15 15 15 A A A . n A 1 16 U 16 16 16 U U A . n A 1 17 G 17 17 17 G G A . n A 1 18 A 18 18 18 A A A . n A 1 19 A 19 19 19 A A A . n A 1 20 A 20 20 20 A A A . n A 1 21 G 21 21 21 G G A . n A 1 22 U 22 22 22 U U A . n A 1 23 G 23 23 23 G G A . n A 1 24 C 24 24 24 C C A . n A 1 25 U 25 25 25 U U A . n A 1 26 A 26 26 26 A A A . n A 1 27 U 27 27 27 U U A . n A 1 28 G 28 28 28 G G A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 A 31 31 31 A A A . n A 1 32 U 32 32 32 U U A . n A 1 33 A 33 33 33 A A A . n A 1 34 G 34 34 34 G G A . n A 1 35 C 35 35 35 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 C 2 2 2 C C B . n B 1 3 U 3 3 3 U U B . n B 1 4 U 4 4 4 U U B . n B 1 5 G 5 5 5 G G B . n B 1 6 C 6 6 6 C C B . n B 1 7 U 7 7 7 U U B . n B 1 8 C 8 8 8 C C B . n B 1 9 U 9 9 9 U U B . n B 1 10 A 10 10 10 A A B . n B 1 11 A 11 11 11 A A B . n B 1 12 G 12 12 12 G G B . n B 1 13 G 13 13 13 G G B . n B 1 14 C 14 14 14 C C B . n B 1 15 A 15 15 15 A A B . n B 1 16 U 16 16 16 U U B . n B 1 17 G 17 17 17 G G B . n B 1 18 A 18 18 18 A A B . n B 1 19 A 19 19 19 A A B . n B 1 20 A 20 20 20 A A B . n B 1 21 G 21 21 21 G G B . n B 1 22 U 22 22 22 U U B . n B 1 23 G 23 23 23 G G B . n B 1 24 C 24 24 24 C C B . n B 1 25 U 25 25 25 U U B . n B 1 26 A 26 26 26 A A B . n B 1 27 U 27 27 27 U U B . n B 1 28 G 28 28 28 G G B . n B 1 29 A 29 29 29 A A B . n B 1 30 G 30 30 30 G G B . n B 1 31 A 31 31 31 A A B . n B 1 32 U 32 32 32 U U B . n B 1 33 A 33 33 33 A A B . n B 1 34 G 34 34 34 G G B . n B 1 35 C 35 35 35 C C B . n C 1 1 G 1 1 1 G G C . n C 1 2 C 2 2 2 C C C . n C 1 3 U 3 3 3 U U C . n C 1 4 U 4 4 4 U U C . n C 1 5 G 5 5 5 G G C . n C 1 6 C 6 6 6 C C C . n C 1 7 U 7 7 7 U U C . n C 1 8 C 8 8 8 C C C . n C 1 9 U 9 9 9 U U C . n C 1 10 A 10 10 10 A A C . n C 1 11 A 11 11 11 A A C . n C 1 12 G 12 12 12 G G C . n C 1 13 G 13 13 13 G G C . n C 1 14 C 14 14 14 C C C . n C 1 15 A 15 15 15 A A C . n C 1 16 U 16 16 16 U U C . n C 1 17 G 17 17 17 G G C . n C 1 18 A 18 18 18 A A C . n C 1 19 A 19 19 19 A A C . n C 1 20 A 20 20 20 A A C . n C 1 21 G 21 21 21 G G C . n C 1 22 U 22 22 22 U U C . n C 1 23 G 23 23 23 G G C . n C 1 24 C 24 24 24 C C C . n C 1 25 U 25 25 25 U U C . n C 1 26 A 26 26 26 A A C . n C 1 27 U 27 27 27 U U C . n C 1 28 G 28 28 28 G G C . n C 1 29 A 29 29 29 A A C . n C 1 30 G 30 30 30 G G C . n C 1 31 A 31 31 31 A A C . n C 1 32 U 32 32 32 U U C . n C 1 33 A 33 33 33 A A C . n C 1 34 G 34 34 34 G G C . n C 1 35 C 35 35 35 C C C . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id AMR _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id AMR _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 AMR 1 101 101 AMR AMR A . E 3 NA 1 102 2 NA NA A . F 2 AMR 1 101 101 AMR AMR B . G 4 CAD 1 102 103 CAD CAD B . H 3 NA 1 103 1 NA NA B . I 2 AMR 1 101 101 AMR AMR C . J 3 NA 1 102 3 NA NA C . K 5 HOH 1 201 21 HOH HOH A . K 5 HOH 2 202 44 HOH HOH A . K 5 HOH 3 203 39 HOH HOH A . K 5 HOH 4 204 27 HOH HOH A . K 5 HOH 5 205 31 HOH HOH A . K 5 HOH 6 206 10 HOH HOH A . K 5 HOH 7 207 25 HOH HOH A . K 5 HOH 8 208 11 HOH HOH A . K 5 HOH 9 209 32 HOH HOH A . K 5 HOH 10 210 33 HOH HOH A . K 5 HOH 11 211 45 HOH HOH A . K 5 HOH 12 212 50 HOH HOH A . K 5 HOH 13 213 29 HOH HOH A . K 5 HOH 14 214 49 HOH HOH A . K 5 HOH 15 215 3 HOH HOH A . L 5 HOH 1 201 12 HOH HOH B . L 5 HOH 2 202 23 HOH HOH B . L 5 HOH 3 203 24 HOH HOH B . L 5 HOH 4 204 17 HOH HOH B . L 5 HOH 5 205 7 HOH HOH B . L 5 HOH 6 206 20 HOH HOH B . L 5 HOH 7 207 35 HOH HOH B . M 5 HOH 1 201 18 HOH HOH C . M 5 HOH 2 202 4 HOH HOH C . M 5 HOH 3 203 2 HOH HOH C . M 5 HOH 4 204 42 HOH HOH C . M 5 HOH 5 205 22 HOH HOH C . M 5 HOH 6 206 6 HOH HOH C . M 5 HOH 7 207 1 HOH HOH C . M 5 HOH 8 208 30 HOH HOH C . M 5 HOH 9 209 15 HOH HOH C . M 5 HOH 10 210 41 HOH HOH C . M 5 HOH 11 211 16 HOH HOH C . M 5 HOH 12 212 9 HOH HOH C . M 5 HOH 13 213 26 HOH HOH C . M 5 HOH 14 214 38 HOH HOH C . M 5 HOH 15 215 13 HOH HOH C . M 5 HOH 16 216 8 HOH HOH C . M 5 HOH 17 217 19 HOH HOH C . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.20.1_4487: ???)' ? 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? . ? 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . ? 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . ? 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . ? 5 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 23KA _cell.details ? _cell.formula_units_Z ? _cell.length_a 61.511 _cell.length_a_esd ? _cell.length_b 61.511 _cell.length_b_esd ? _cell.length_c 106.158 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 9 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 23KA _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 23KA _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.42 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 64.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Sodium citrate tribasic dihydrate, Sodium cacodylate trihydrate, 2-Propanol' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293.15 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2025-10-19 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 23KA _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.59 _reflns.d_resolution_low 37.60 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13907 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.5 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.51 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.065 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.59 _reflns_shell.d_res_low 2.69 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1026 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.343 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 23KA _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.59 _refine.ls_d_res_low 37.60 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13903 _refine.ls_number_reflns_R_free 1413 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.83 _refine.ls_percent_reflns_R_free 10.16 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1858 _refine.ls_R_factor_R_free 0.2192 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1820 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.04 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.60 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.51 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2241 _refine_hist.pdbx_number_atoms_ligand 53 _refine_hist.number_atoms_solvent 39 _refine_hist.number_atoms_total 2333 _refine_hist.d_res_high 2.59 _refine_hist.d_res_low 37.60 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 ? 2557 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 1.591 ? 3975 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 14.402 ? 1251 ? f_dihedral_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.089 ? 522 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.011 ? 111 ? f_plane_restr ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.59 2.69 . . 128 1228 99.00 . . . . 0.3324 . . . . . . . . . . . . . . . 0.3130 'X-RAY DIFFRACTION' 2.69 2.79 . . 150 1282 100.00 . . . . 0.3730 . . . . . . . . . . . . . . . 0.4398 'X-RAY DIFFRACTION' 2.79 2.92 . . 140 1244 100.00 . . . . 0.3234 . . . . . . . . . . . . . . . 0.3948 'X-RAY DIFFRACTION' 2.92 3.07 . . 146 1266 100.00 . . . . 0.2588 . . . . . . . . . . . . . . . 0.3517 'X-RAY DIFFRACTION' 3.07 3.27 . . 142 1215 100.00 . . . . 0.2029 . . . . . . . . . . . . . . . 0.2562 'X-RAY DIFFRACTION' 3.27 3.52 . . 136 1254 100.00 . . . . 0.2023 . . . . . . . . . . . . . . . 0.2454 'X-RAY DIFFRACTION' 3.52 3.87 . . 144 1263 100.00 . . . . 0.1623 . . . . . . . . . . . . . . . 0.2153 'X-RAY DIFFRACTION' 3.87 4.43 . . 136 1256 100.00 . . . . 0.1522 . . . . . . . . . . . . . . . 0.1716 'X-RAY DIFFRACTION' 4.43 5.58 . . 139 1265 100.00 . . . . 0.1246 . . . . . . . . . . . . . . . 0.1393 'X-RAY DIFFRACTION' 5.58 37.60 . . 152 1217 100.00 . . . . 0.1335 . . . . . . . . . . . . . . . 0.1649 # _struct.entry_id 23KA _struct.title 'pre-miR-6074 internal loop in complex with amiloride (Form 2)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 23KA _struct_keywords.text 'pre-miR-6074, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 2 ? G N N 4 ? H N N 3 ? I N N 2 ? J N N 3 ? K N N 5 ? L N N 5 ? M N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 23KA _struct_ref.pdbx_db_accession 23KA _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 23KA A 1 ? 35 ? 23KA 1 ? 35 ? 1 35 2 1 23KA B 1 ? 35 ? 23KA 1 ? 35 ? 1 35 3 1 23KA C 1 ? 35 ? 23KA 1 ? 35 ? 1 35 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E,K 2 1 B,F,G,H,L 3 1 C,I,J,M # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A U 3 "O2'" ? ? ? 1_555 D AMR . N6 ? ? A U 3 A AMR 101 1_555 ? ? ? ? ? ? ? 1.308 ? ? metalc1 metalc ? ? A G 13 O6 ? ? ? 1_555 E NA . NA ? ? A G 13 A NA 102 1_555 ? ? ? ? ? ? ? 3.080 ? ? metalc2 metalc ? ? E NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 102 A HOH 205 1_555 ? ? ? ? ? ? ? 2.958 ? ? metalc3 metalc ? ? B A 10 "O3'" ? ? ? 1_555 H NA . NA ? ? B A 10 B NA 103 1_555 ? ? ? ? ? ? ? 2.771 ? ? metalc4 metalc ? ? B A 10 "O2'" ? ? ? 1_555 H NA . NA ? ? B A 10 B NA 103 1_555 ? ? ? ? ? ? ? 2.466 ? ? metalc5 metalc ? ? B G 12 O6 ? ? ? 1_555 H NA . NA ? ? B G 12 B NA 103 1_555 ? ? ? ? ? ? ? 2.445 ? ? metalc6 metalc ? ? C A 10 "O2'" ? ? ? 1_555 J NA . NA ? ? C A 10 C NA 102 1_555 ? ? ? ? ? ? ? 2.811 ? ? metalc7 metalc ? ? C G 12 O6 ? ? ? 1_555 J NA . NA ? ? C G 12 C NA 102 1_555 ? ? ? ? ? ? ? 2.628 ? ? metalc8 metalc ? ? J NA . NA ? ? ? 1_555 M HOH . O ? ? C NA 102 C HOH 207 1_555 ? ? ? ? ? ? ? 2.615 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 35 N3 ? ? A G 1 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 35 O2 ? ? A G 1 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 35 N4 ? ? A G 1 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 34 N1 ? ? A C 2 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 34 O6 ? ? A C 2 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 34 N2 ? ? A C 2 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 33 N1 ? ? A U 3 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 33 N6 ? ? A U 3 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 5 N1 ? ? ? 1_555 A A 31 N1 ? ? A G 5 A A 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog10 hydrog ? ? A G 5 O6 ? ? ? 1_555 A A 31 N6 ? ? A G 5 A A 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog11 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 6 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 6 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 6 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 29 N1 ? ? A U 7 A A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 29 N6 ? ? A U 7 A A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 8 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 8 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 8 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 26 N7 ? ? A U 9 A A 26 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog20 hydrog ? ? A U 9 O2 ? ? ? 1_555 A A 26 N6 ? ? A U 9 A A 26 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog21 hydrog ? ? A A 11 N1 ? ? ? 1_555 A U 27 N3 ? ? A A 11 A U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 27 O4 ? ? A A 11 A U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 12 N1 ? ? ? 1_555 A U 25 O2 ? ? A G 12 A U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog24 hydrog ? ? A G 12 O6 ? ? ? 1_555 A U 25 N3 ? ? A G 12 A U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog25 hydrog ? ? A G 12 N2 ? ? ? 1_555 A U 27 O4 ? ? A G 12 A U 27 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog26 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 24 N3 ? ? A G 13 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 24 O2 ? ? A G 13 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 24 N4 ? ? A G 13 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 14 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 14 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 14 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 22 N3 ? ? A A 15 A U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 22 O4 ? ? A A 15 A U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 16 N3 ? ? ? 1_555 A G 21 O6 ? ? A U 16 A G 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog35 hydrog ? ? A U 16 O2 ? ? ? 1_555 A G 21 N1 ? ? A U 16 A G 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A G 17 N2 ? ? ? 1_555 A A 20 N7 ? ? A G 17 A A 20 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog37 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 35 N3 ? ? B G 1 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 35 O2 ? ? B G 1 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 35 N4 ? ? B G 1 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B C 2 N3 ? ? ? 1_555 B G 34 N1 ? ? B C 2 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B C 2 N4 ? ? ? 1_555 B G 34 O6 ? ? B C 2 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 34 N2 ? ? B C 2 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B U 3 N3 ? ? ? 1_555 B A 33 N1 ? ? B U 3 B A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B U 3 O4 ? ? ? 1_555 B A 33 N6 ? ? B U 3 B A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B G 5 N1 ? ? ? 1_555 B A 31 N1 ? ? B G 5 B A 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog46 hydrog ? ? B G 5 O6 ? ? ? 1_555 B A 31 N6 ? ? B G 5 B A 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog47 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 30 N1 ? ? B C 6 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 30 O6 ? ? B C 6 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 30 N2 ? ? B C 6 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B U 7 N3 ? ? ? 1_555 B A 29 N1 ? ? B U 7 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B U 7 O4 ? ? ? 1_555 B A 29 N6 ? ? B U 7 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B C 8 N3 ? ? ? 1_555 B G 28 N1 ? ? B C 8 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B C 8 N4 ? ? ? 1_555 B G 28 O6 ? ? B C 8 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B C 8 O2 ? ? ? 1_555 B G 28 N2 ? ? B C 8 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 26 N7 ? ? B U 9 B A 26 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog56 hydrog ? ? B U 9 O2 ? ? ? 1_555 B A 26 N6 ? ? B U 9 B A 26 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog57 hydrog ? ? B G 12 N1 ? ? ? 1_555 B U 25 O2 ? ? B G 12 B U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog58 hydrog ? ? B G 12 O6 ? ? ? 1_555 B U 25 N3 ? ? B G 12 B U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog59 hydrog ? ? B G 13 N1 ? ? ? 1_555 B C 24 N3 ? ? B G 13 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B G 13 N2 ? ? ? 1_555 B C 24 O2 ? ? B G 13 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B G 13 O6 ? ? ? 1_555 B C 24 N4 ? ? B G 13 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B C 14 N3 ? ? ? 1_555 B G 23 N1 ? ? B C 14 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B C 14 N4 ? ? ? 1_555 B G 23 O6 ? ? B C 14 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B C 14 O2 ? ? ? 1_555 B G 23 N2 ? ? B C 14 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B A 15 N1 ? ? ? 1_555 B U 22 N3 ? ? B A 15 B U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B A 15 N6 ? ? ? 1_555 B U 22 O4 ? ? B A 15 B U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B U 16 N3 ? ? ? 1_555 B G 21 O6 ? ? B U 16 B G 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog68 hydrog ? ? B U 16 O2 ? ? ? 1_555 B G 21 N1 ? ? B U 16 B G 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog69 hydrog ? ? B G 17 N2 ? ? ? 1_555 B A 20 N7 ? ? B G 17 B A 20 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog70 hydrog ? ? B G 17 N3 ? ? ? 1_555 B A 20 N6 ? ? B G 17 B A 20 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog71 hydrog ? ? C G 1 N1 ? ? ? 1_555 C C 35 N3 ? ? C G 1 C C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? C G 1 N2 ? ? ? 1_555 C C 35 O2 ? ? C G 1 C C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? C G 1 O6 ? ? ? 1_555 C C 35 N4 ? ? C G 1 C C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? C C 2 N3 ? ? ? 1_555 C G 34 N1 ? ? C C 2 C G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? C C 2 N4 ? ? ? 1_555 C G 34 O6 ? ? C C 2 C G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? C C 2 O2 ? ? ? 1_555 C G 34 N2 ? ? C C 2 C G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? C U 3 N3 ? ? ? 1_555 C A 33 N1 ? ? C U 3 C A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? C U 3 O4 ? ? ? 1_555 C A 33 N6 ? ? C U 3 C A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? C G 5 N1 ? ? ? 1_555 C A 31 N1 ? ? C G 5 C A 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog80 hydrog ? ? C G 5 O6 ? ? ? 1_555 C A 31 N6 ? ? C G 5 C A 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog81 hydrog ? ? C C 6 N3 ? ? ? 1_555 C G 30 N1 ? ? C C 6 C G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? C C 6 N4 ? ? ? 1_555 C G 30 O6 ? ? C C 6 C G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? C C 6 O2 ? ? ? 1_555 C G 30 N2 ? ? C C 6 C G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? C U 7 N3 ? ? ? 1_555 C A 29 N1 ? ? C U 7 C A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? C U 7 O4 ? ? ? 1_555 C A 29 N6 ? ? C U 7 C A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? C C 8 N3 ? ? ? 1_555 C G 28 N1 ? ? C C 8 C G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? C C 8 N4 ? ? ? 1_555 C G 28 O6 ? ? C C 8 C G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? C C 8 O2 ? ? ? 1_555 C G 28 N2 ? ? C C 8 C G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? C U 9 N3 ? ? ? 1_555 C A 26 N7 ? ? C U 9 C A 26 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog90 hydrog ? ? C U 9 O2 ? ? ? 1_555 C A 26 N6 ? ? C U 9 C A 26 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog91 hydrog ? ? C G 12 N1 ? ? ? 1_555 C U 25 O2 ? ? C G 12 C U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog92 hydrog ? ? C G 12 O6 ? ? ? 1_555 C U 25 N3 ? ? C G 12 C U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog93 hydrog ? ? C G 13 N1 ? ? ? 1_555 C C 24 N3 ? ? C G 13 C C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? C G 13 N2 ? ? ? 1_555 C C 24 O2 ? ? C G 13 C C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? C G 13 O6 ? ? ? 1_555 C C 24 N4 ? ? C G 13 C C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? C C 14 N3 ? ? ? 1_555 C G 23 N1 ? ? C C 14 C G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? C C 14 N4 ? ? ? 1_555 C G 23 O6 ? ? C C 14 C G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? C C 14 O2 ? ? ? 1_555 C G 23 N2 ? ? C C 14 C G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? C A 15 N1 ? ? ? 1_555 C U 22 N3 ? ? C A 15 C U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? C A 15 N6 ? ? ? 1_555 C U 22 O4 ? ? C A 15 C U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? C U 16 N3 ? ? ? 1_555 C G 21 O6 ? ? C U 16 C G 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog102 hydrog ? ? C U 16 O2 ? ? ? 1_555 C G 21 N1 ? ? C U 16 C G 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog103 hydrog ? ? C G 17 N2 ? ? ? 1_555 C A 20 N7 ? ? C G 17 C A 20 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog104 hydrog ? ? C G 17 N3 ? ? ? 1_555 C A 20 N6 ? ? C G 17 C A 20 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 13 ? A G 13 ? 1_555 NA ? E NA . ? A NA 102 ? 1_555 O ? K HOH . ? A HOH 205 ? 1_555 65.4 ? 2 "O3'" ? B A 10 ? B A 10 ? 1_555 NA ? H NA . ? B NA 103 ? 1_555 "O2'" ? B A 10 ? B A 10 ? 1_555 63.0 ? 3 "O3'" ? B A 10 ? B A 10 ? 1_555 NA ? H NA . ? B NA 103 ? 1_555 O6 ? B G 12 ? B G 12 ? 1_555 132.1 ? 4 "O2'" ? B A 10 ? B A 10 ? 1_555 NA ? H NA . ? B NA 103 ? 1_555 O6 ? B G 12 ? B G 12 ? 1_555 76.4 ? 5 "O2'" ? C A 10 ? C A 10 ? 1_555 NA ? J NA . ? C NA 102 ? 1_555 O6 ? C G 12 ? C G 12 ? 1_555 67.5 ? 6 "O2'" ? C A 10 ? C A 10 ? 1_555 NA ? J NA . ? C NA 102 ? 1_555 O ? M HOH . ? C HOH 207 ? 1_555 177.3 ? 7 O6 ? C G 12 ? C G 12 ? 1_555 NA ? J NA . ? C NA 102 ? 1_555 O ? M HOH . ? C HOH 207 ? 1_555 111.0 ? # _pdbx_entry_details.entry_id 23KA _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 U _pdbx_validate_rmsd_angle.auth_seq_id_1 27 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 G _pdbx_validate_rmsd_angle.auth_seq_id_2 28 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP1 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 G _pdbx_validate_rmsd_angle.auth_seq_id_3 28 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 118.29 _pdbx_validate_rmsd_angle.angle_target_value 110.50 _pdbx_validate_rmsd_angle.angle_deviation 7.79 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 AMR N1 N Y N 38 AMR C1 C Y N 39 AMR C3 C N N 40 AMR N5 N N N 41 AMR C6 C N N 42 AMR N7 N N N 43 AMR N6 N N N 44 AMR O1 O N N 45 AMR C2 C Y N 46 AMR N4 N N N 47 AMR N3 N Y N 48 AMR C4 C Y N 49 AMR N2 N N N 50 AMR C5 C Y N 51 AMR CL1 CL N N 52 AMR HN5 H N N 53 AMR HN71 H N N 54 AMR HN72 H N N 55 AMR HN6 H N N 56 AMR HN41 H N N 57 AMR HN42 H N N 58 AMR HN21 H N N 59 AMR HN22 H N N 60 C OP3 O N N 61 C P P N N 62 C OP1 O N N 63 C OP2 O N N 64 C "O5'" O N N 65 C "C5'" C N N 66 C "C4'" C N R 67 C "O4'" O N N 68 C "C3'" C N S 69 C "O3'" O N N 70 C "C2'" C N R 71 C "O2'" O N N 72 C "C1'" C N R 73 C N1 N N N 74 C C2 C N N 75 C O2 O N N 76 C N3 N N N 77 C C4 C N N 78 C N4 N N N 79 C C5 C N N 80 C C6 C N N 81 C HOP3 H N N 82 C HOP2 H N N 83 C "H5'" H N N 84 C "H5''" H N N 85 C "H4'" H N N 86 C "H3'" H N N 87 C "HO3'" H N N 88 C "H2'" H N N 89 C "HO2'" H N N 90 C "H1'" H N N 91 C H41 H N N 92 C H42 H N N 93 C H5 H N N 94 C H6 H N N 95 CAD AS AS N N 96 CAD C1 C N N 97 CAD C2 C N N 98 CAD O1 O N N 99 CAD O2 O N N 100 CAD H11 H N N 101 CAD H12 H N N 102 CAD H13 H N N 103 CAD H21 H N N 104 CAD H22 H N N 105 CAD H23 H N N 106 CAD HO1 H N N 107 G OP3 O N N 108 G P P N N 109 G OP1 O N N 110 G OP2 O N N 111 G "O5'" O N N 112 G "C5'" C N N 113 G "C4'" C N R 114 G "O4'" O N N 115 G "C3'" C N S 116 G "O3'" O N N 117 G "C2'" C N R 118 G "O2'" O N N 119 G "C1'" C N R 120 G N9 N Y N 121 G C8 C Y N 122 G N7 N Y N 123 G C5 C Y N 124 G C6 C N N 125 G O6 O N N 126 G N1 N N N 127 G C2 C N N 128 G N2 N N N 129 G N3 N N N 130 G C4 C Y N 131 G HOP3 H N N 132 G HOP2 H N N 133 G "H5'" H N N 134 G "H5''" H N N 135 G "H4'" H N N 136 G "H3'" H N N 137 G "HO3'" H N N 138 G "H2'" H N N 139 G "HO2'" H N N 140 G "H1'" H N N 141 G H8 H N N 142 G H1 H N N 143 G H21 H N N 144 G H22 H N N 145 HOH O O N N 146 HOH H1 H N N 147 HOH H2 H N N 148 NA NA NA N N 149 U OP3 O N N 150 U P P N N 151 U OP1 O N N 152 U OP2 O N N 153 U "O5'" O N N 154 U "C5'" C N N 155 U "C4'" C N R 156 U "O4'" O N N 157 U "C3'" C N S 158 U "O3'" O N N 159 U "C2'" C N R 160 U "O2'" O N N 161 U "C1'" C N R 162 U N1 N N N 163 U C2 C N N 164 U O2 O N N 165 U N3 N N N 166 U C4 C N N 167 U O4 O N N 168 U C5 C N N 169 U C6 C N N 170 U HOP3 H N N 171 U HOP2 H N N 172 U "H5'" H N N 173 U "H5''" H N N 174 U "H4'" H N N 175 U "H3'" H N N 176 U "HO3'" H N N 177 U "H2'" H N N 178 U "HO2'" H N N 179 U "H1'" H N N 180 U H3 H N N 181 U H5 H N N 182 U H6 H N N 183 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 AMR N1 C1 doub Y N 40 AMR N1 C5 sing Y N 41 AMR C1 C3 sing N N 42 AMR C1 C2 sing Y N 43 AMR C3 N5 sing N N 44 AMR C3 O1 doub N N 45 AMR N5 C6 sing N N 46 AMR N5 HN5 sing N N 47 AMR C6 N7 sing N N 48 AMR C6 N6 doub N N 49 AMR N7 HN71 sing N N 50 AMR N7 HN72 sing N N 51 AMR N6 HN6 sing N N 52 AMR C2 N4 sing N N 53 AMR C2 N3 doub Y N 54 AMR N4 HN41 sing N N 55 AMR N4 HN42 sing N N 56 AMR N3 C4 sing Y N 57 AMR C4 N2 sing N N 58 AMR C4 C5 doub Y N 59 AMR N2 HN21 sing N N 60 AMR N2 HN22 sing N N 61 AMR C5 CL1 sing N N 62 C OP3 P sing N N 63 C OP3 HOP3 sing N N 64 C P OP1 doub N N 65 C P OP2 sing N N 66 C P "O5'" sing N N 67 C OP2 HOP2 sing N N 68 C "O5'" "C5'" sing N N 69 C "C5'" "C4'" sing N N 70 C "C5'" "H5'" sing N N 71 C "C5'" "H5''" sing N N 72 C "C4'" "O4'" sing N N 73 C "C4'" "C3'" sing N N 74 C "C4'" "H4'" sing N N 75 C "O4'" "C1'" sing N N 76 C "C3'" "O3'" sing N N 77 C "C3'" "C2'" sing N N 78 C "C3'" "H3'" sing N N 79 C "O3'" "HO3'" sing N N 80 C "C2'" "O2'" sing N N 81 C "C2'" "C1'" sing N N 82 C "C2'" "H2'" sing N N 83 C "O2'" "HO2'" sing N N 84 C "C1'" N1 sing N N 85 C "C1'" "H1'" sing N N 86 C N1 C2 sing N N 87 C N1 C6 sing N N 88 C C2 O2 doub N N 89 C C2 N3 sing N N 90 C N3 C4 doub N N 91 C C4 N4 sing N N 92 C C4 C5 sing N N 93 C N4 H41 sing N N 94 C N4 H42 sing N N 95 C C5 C6 doub N N 96 C C5 H5 sing N N 97 C C6 H6 sing N N 98 CAD AS C1 sing N N 99 CAD AS C2 sing N N 100 CAD AS O1 sing N N 101 CAD AS O2 doub N N 102 CAD C1 H11 sing N N 103 CAD C1 H12 sing N N 104 CAD C1 H13 sing N N 105 CAD C2 H21 sing N N 106 CAD C2 H22 sing N N 107 CAD C2 H23 sing N N 108 CAD O1 HO1 sing N N 109 G OP3 P sing N N 110 G OP3 HOP3 sing N N 111 G P OP1 doub N N 112 G P OP2 sing N N 113 G P "O5'" sing N N 114 G OP2 HOP2 sing N N 115 G "O5'" "C5'" sing N N 116 G "C5'" "C4'" sing N N 117 G "C5'" "H5'" sing N N 118 G "C5'" "H5''" sing N N 119 G "C4'" "O4'" sing N N 120 G "C4'" "C3'" sing N N 121 G "C4'" "H4'" sing N N 122 G "O4'" "C1'" sing N N 123 G "C3'" "O3'" sing N N 124 G "C3'" "C2'" sing N N 125 G "C3'" "H3'" sing N N 126 G "O3'" "HO3'" sing N N 127 G "C2'" "O2'" sing N N 128 G "C2'" "C1'" sing N N 129 G "C2'" "H2'" sing N N 130 G "O2'" "HO2'" sing N N 131 G "C1'" N9 sing N N 132 G "C1'" "H1'" sing N N 133 G N9 C8 sing Y N 134 G N9 C4 sing Y N 135 G C8 N7 doub Y N 136 G C8 H8 sing N N 137 G N7 C5 sing Y N 138 G C5 C6 sing N N 139 G C5 C4 doub Y N 140 G C6 O6 doub N N 141 G C6 N1 sing N N 142 G N1 C2 sing N N 143 G N1 H1 sing N N 144 G C2 N2 sing N N 145 G C2 N3 doub N N 146 G N2 H21 sing N N 147 G N2 H22 sing N N 148 G N3 C4 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 U OP3 P sing N N 152 U OP3 HOP3 sing N N 153 U P OP1 doub N N 154 U P OP2 sing N N 155 U P "O5'" sing N N 156 U OP2 HOP2 sing N N 157 U "O5'" "C5'" sing N N 158 U "C5'" "C4'" sing N N 159 U "C5'" "H5'" sing N N 160 U "C5'" "H5''" sing N N 161 U "C4'" "O4'" sing N N 162 U "C4'" "C3'" sing N N 163 U "C4'" "H4'" sing N N 164 U "O4'" "C1'" sing N N 165 U "C3'" "O3'" sing N N 166 U "C3'" "C2'" sing N N 167 U "C3'" "H3'" sing N N 168 U "O3'" "HO3'" sing N N 169 U "C2'" "O2'" sing N N 170 U "C2'" "C1'" sing N N 171 U "C2'" "H2'" sing N N 172 U "O2'" "HO2'" sing N N 173 U "C1'" N1 sing N N 174 U "C1'" "H1'" sing N N 175 U N1 C2 sing N N 176 U N1 C6 sing N N 177 U C2 O2 doub N N 178 U C2 N3 sing N N 179 U N3 C4 sing N N 180 U N3 H3 sing N N 181 U C4 O4 doub N N 182 U C4 C5 sing N N 183 U C5 C6 doub N N 184 U C5 H5 sing N N 185 U C6 H6 sing N N 186 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 23KA 'double helix' 23KA 'a-form double helix' 23KA tetraloop 23KA 'mismatched base pair' 23KA 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 35 1_555 -0.093 -0.417 0.056 -6.154 -11.804 -1.463 1 A_G1:C35_A A 1 ? A 35 ? 19 1 1 A C 2 1_555 A G 34 1_555 0.473 -0.112 0.318 1.505 -10.092 7.728 2 A_C2:G34_A A 2 ? A 34 ? 19 1 1 A U 3 1_555 A A 33 1_555 -0.027 0.194 -0.348 15.203 1.048 -2.685 3 A_U3:A33_A A 3 ? A 33 ? 20 1 1 A G 5 1_555 A A 31 1_555 0.484 1.394 -0.113 19.517 -16.544 -17.288 4 A_G5:A31_A A 5 ? A 31 ? 8 1 1 A C 6 1_555 A G 30 1_555 0.089 -0.209 -0.172 15.795 -20.198 -3.109 5 A_C6:G30_A A 6 ? A 30 ? 19 1 1 A U 7 1_555 A A 29 1_555 -0.323 -0.282 0.118 3.596 -12.833 0.620 6 A_U7:A29_A A 7 ? A 29 ? 20 1 1 A C 8 1_555 A G 28 1_555 0.639 -0.193 -0.020 0.176 -12.375 0.218 7 A_C8:G28_A A 8 ? A 28 ? 19 1 1 A A 26 1_555 A U 9 1_555 -4.460 -2.531 -0.419 17.920 -5.238 -88.894 8 A_A26:U9_A A 26 ? A 9 ? 24 4 1 A A 11 1_555 A U 27 1_555 0.198 -0.001 -0.563 -30.259 29.531 -3.366 9 A_A11:U27_A A 11 ? A 27 ? 20 1 1 A G 12 1_555 A U 25 1_555 -2.561 -0.728 -0.191 -5.735 -4.557 -9.848 10 A_G12:U25_A A 12 ? A 25 ? 28 1 1 A G 13 1_555 A C 24 1_555 -0.298 -0.039 -0.108 4.358 -6.987 3.983 11 A_G13:C24_A A 13 ? A 24 ? 19 1 1 A C 14 1_555 A G 23 1_555 0.456 -0.179 -0.121 4.144 -11.195 0.765 12 A_C14:G23_A A 14 ? A 23 ? 19 1 1 A A 15 1_555 A U 22 1_555 0.006 0.121 -0.315 -6.827 -9.719 8.007 13 A_A15:U22_A A 15 ? A 22 ? 20 1 1 A U 16 1_555 A G 21 1_555 2.478 -0.639 -0.326 1.114 -0.023 3.577 14 A_U16:G21_A A 16 ? A 21 ? 28 1 1 A G 17 1_555 A A 20 1_555 6.969 -5.163 0.650 12.470 1.451 -15.070 15 A_G17:A20_A A 17 ? A 20 ? ? ? 1 B G 1 1_555 B C 35 1_555 -0.342 -0.199 -0.048 -9.980 -3.270 5.923 16 B_G1:C35_B B 1 ? B 35 ? 19 1 1 B C 2 1_555 B G 34 1_555 -0.095 -0.280 -0.136 -4.191 -5.449 -2.122 17 B_C2:G34_B B 2 ? B 34 ? 19 1 1 B U 3 1_555 B A 33 1_555 -0.176 -0.371 -0.380 14.005 6.538 -0.174 18 B_U3:A33_B B 3 ? B 33 ? 20 1 1 B G 5 1_555 B A 31 1_555 -0.392 1.393 -0.126 20.806 -18.207 -8.865 19 B_G5:A31_B B 5 ? B 31 ? 8 1 1 B C 6 1_555 B G 30 1_555 0.130 -0.262 -0.279 18.420 -19.761 -5.239 20 B_C6:G30_B B 6 ? B 30 ? 19 1 1 B U 7 1_555 B A 29 1_555 -0.080 -0.191 -0.037 8.076 -13.458 -3.525 21 B_U7:A29_B B 7 ? B 29 ? 20 1 1 B C 8 1_555 B G 28 1_555 0.306 -0.100 0.142 -2.069 -11.466 -2.794 22 B_C8:G28_B B 8 ? B 28 ? 19 1 1 B U 9 1_555 B A 26 1_555 4.396 -2.409 -0.229 -20.255 2.950 -89.457 23 B_U9:A26_B B 9 ? B 26 ? 24 4 1 B G 12 1_555 B U 25 1_555 -2.702 -0.677 -0.138 -4.393 -10.970 0.321 24 B_G12:U25_B B 12 ? B 25 ? 28 1 1 B G 13 1_555 B C 24 1_555 0.011 -0.113 -0.058 -0.709 -11.758 4.466 25 B_G13:C24_B B 13 ? B 24 ? 19 1 1 B C 14 1_555 B G 23 1_555 0.097 -0.161 -0.333 0.301 -13.033 4.995 26 B_C14:G23_B B 14 ? B 23 ? 19 1 1 B A 15 1_555 B U 22 1_555 0.402 -0.051 -0.232 -6.981 -13.162 7.269 27 B_A15:U22_B B 15 ? B 22 ? 20 1 1 B U 16 1_555 B G 21 1_555 2.544 -0.452 0.051 -0.121 -2.527 10.084 28 B_U16:G21_B B 16 ? B 21 ? 28 1 1 B G 17 1_555 B A 20 1_555 7.064 -4.845 0.739 16.865 0.273 -10.938 29 B_G17:A20_B B 17 ? B 20 ? 11 10 1 C G 1 1_555 C C 35 1_555 -0.521 -0.039 -0.280 8.234 -14.589 -10.899 30 C_G1:C35_C C 1 ? C 35 ? 19 1 1 C C 2 1_555 C G 34 1_555 0.493 -0.188 -0.377 8.461 -16.524 2.607 31 C_C2:G34_C C 2 ? C 34 ? 19 1 1 C U 3 1_555 C A 33 1_555 0.118 -0.166 -0.415 13.353 5.954 7.122 32 C_U3:A33_C C 3 ? C 33 ? 20 1 1 C G 5 1_555 C A 31 1_555 -0.305 1.550 -0.032 14.477 -6.495 -15.069 33 C_G5:A31_C C 5 ? C 31 ? 8 1 1 C C 6 1_555 C G 30 1_555 0.464 -0.094 0.022 11.160 -11.912 4.102 34 C_C6:G30_C C 6 ? C 30 ? 19 1 1 C U 7 1_555 C A 29 1_555 0.176 -0.152 -0.022 3.610 -7.907 1.151 35 C_U7:A29_C C 7 ? C 29 ? 20 1 1 C C 8 1_555 C G 28 1_555 0.195 0.000 -0.074 4.229 -10.489 0.359 36 C_C8:G28_C C 8 ? C 28 ? 19 1 1 C U 9 1_555 C A 26 1_555 4.426 -2.497 -0.402 -19.348 0.227 -90.159 37 C_U9:A26_C C 9 ? C 26 ? 24 4 1 C G 12 1_555 C U 25 1_555 -2.012 -0.581 0.251 -1.630 -8.332 3.118 38 C_G12:U25_C C 12 ? C 25 ? 28 1 1 C G 13 1_555 C C 24 1_555 -0.443 -0.117 -0.027 2.057 -7.839 0.566 39 C_G13:C24_C C 13 ? C 24 ? 19 1 1 C C 14 1_555 C G 23 1_555 -0.033 -0.146 -0.274 4.072 -8.149 -3.504 40 C_C14:G23_C C 14 ? C 23 ? 19 1 1 C A 15 1_555 C U 22 1_555 -0.170 -0.086 -0.041 -4.495 -13.294 4.112 41 C_A15:U22_C C 15 ? C 22 ? 20 1 1 C U 16 1_555 C G 21 1_555 2.208 -0.438 -0.070 0.707 -0.968 3.178 42 C_U16:G21_C C 16 ? C 21 ? 28 1 1 C G 17 1_555 C A 20 1_555 6.928 -4.861 0.658 16.957 2.736 -15.428 43 C_G17:A20_C C 17 ? C 20 ? 11 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 35 1_555 A C 2 1_555 A G 34 1_555 0.641 -1.929 3.155 -0.998 -2.236 35.031 -2.870 -1.209 3.249 -3.709 1.655 35.114 1 AA_G1C2:G34C35_AA A 1 ? A 35 ? A 2 ? A 34 ? 1 A C 2 1_555 A G 34 1_555 A U 3 1_555 A A 33 1_555 -1.221 -1.937 3.003 2.838 5.737 21.615 -6.682 3.978 2.243 14.882 -7.363 22.532 2 AA_C2U3:A33G34_AA A 2 ? A 34 ? A 3 ? A 33 ? 1 A U 3 1_555 A A 33 1_555 A G 5 1_555 A A 31 1_555 -1.423 -2.008 6.650 -14.297 2.582 54.619 -2.429 -0.172 6.708 2.760 15.279 56.374 3 AA_U3G5:A31A33_AA A 3 ? A 33 ? A 5 ? A 31 ? 1 A G 5 1_555 A A 31 1_555 A C 6 1_555 A G 30 1_555 0.147 -2.067 3.245 -5.945 -0.089 29.881 -3.917 -1.455 3.163 -0.171 11.387 30.453 4 AA_G5C6:G30A31_AA A 5 ? A 31 ? A 6 ? A 30 ? 1 A C 6 1_555 A G 30 1_555 A U 7 1_555 A A 29 1_555 0.152 -1.755 3.508 -5.126 6.769 34.384 -3.904 -1.020 3.065 11.239 8.511 35.386 5 AA_C6U7:A29G30_AA A 6 ? A 30 ? A 7 ? A 29 ? 1 A U 7 1_555 A A 29 1_555 A C 8 1_555 A G 28 1_555 -0.745 -2.169 3.266 -1.295 5.418 33.123 -4.600 1.089 2.911 9.420 2.252 33.575 6 AA_U7C8:G28A29_AA A 7 ? A 29 ? A 8 ? A 28 ? 1 A C 8 1_555 A G 28 1_555 A A 26 1_555 A U 9 1_555 -0.395 -4.972 0.478 -135.101 -100.912 92.111 -2.118 -0.303 2.623 -51.405 68.821 172.115 7 AA_C8A26:U9G28_AA A 8 ? A 28 ? A 26 ? A 9 ? 1 A A 26 1_555 A U 9 1_555 A A 11 1_555 A U 27 1_555 -1.910 4.139 2.806 -146.836 -14.100 89.468 2.228 -0.233 3.062 -7.495 78.052 157.076 8 AA_A26A11:U27U9_AA A 26 ? A 9 ? A 11 ? A 27 ? 1 A A 11 1_555 A U 27 1_555 A G 12 1_555 A U 25 1_555 3.889 -0.453 2.510 -5.802 30.324 54.373 -1.416 -3.966 1.688 30.593 5.854 61.941 9 AA_A11G12:U25U27_AA A 11 ? A 27 ? A 12 ? A 25 ? 1 A G 12 1_555 A U 25 1_555 A G 13 1_555 A C 24 1_555 0.460 -1.512 3.123 -3.180 4.004 35.768 -2.961 -1.157 2.893 6.478 5.144 36.119 10 AA_G12G13:C24U25_AA A 12 ? A 25 ? A 13 ? A 24 ? 1 A G 13 1_555 A C 24 1_555 A C 14 1_555 A G 23 1_555 -0.745 -1.457 3.248 -3.162 8.519 37.400 -3.224 0.756 2.910 13.050 4.845 38.450 11 AA_G13C14:G23C24_AA A 13 ? A 24 ? A 14 ? A 23 ? 1 A C 14 1_555 A G 23 1_555 A A 15 1_555 A U 22 1_555 0.510 -1.613 3.523 2.047 11.107 28.221 -5.300 -0.564 2.736 21.711 -4.001 30.354 12 AA_C14A15:U22G23_AA A 14 ? A 23 ? A 15 ? A 22 ? 1 A A 15 1_555 A U 22 1_555 A U 16 1_555 A G 21 1_555 0.197 -1.404 3.165 2.741 7.094 38.674 -2.866 0.011 2.880 10.588 -4.090 39.387 13 AA_A15U16:G21U22_AA A 15 ? A 22 ? A 16 ? A 21 ? 1 A U 16 1_555 A G 21 1_555 A G 17 1_555 A A 20 1_555 -2.220 -1.037 2.959 -0.273 11.089 43.825 -2.216 2.870 2.648 14.580 0.359 45.139 14 AA_U16G17:A20G21_AA A 16 ? A 21 ? A 17 ? A 20 ? 1 B G 1 1_555 B C 35 1_555 B C 2 1_555 B G 34 1_555 -0.742 -1.683 3.067 -0.583 5.634 30.636 -4.097 1.283 2.734 10.550 1.092 31.143 15 BB_G1C2:G34C35_BB B 1 ? B 35 ? B 2 ? B 34 ? 1 B C 2 1_555 B G 34 1_555 B U 3 1_555 B A 33 1_555 -0.308 -0.973 3.010 0.670 11.902 26.853 -4.127 0.733 2.366 24.173 -1.360 29.336 16 BB_C2U3:A33G34_BB B 2 ? B 34 ? B 3 ? B 33 ? 1 B U 3 1_555 B A 33 1_555 B G 5 1_555 B A 31 1_555 -0.867 -1.545 6.555 -9.195 12.608 50.801 -3.337 -0.199 6.100 14.314 10.439 52.991 17 BB_U3G5:A31A33_BB B 3 ? B 33 ? B 5 ? B 31 ? 1 B G 5 1_555 B A 31 1_555 B C 6 1_555 B G 30 1_555 0.201 -1.282 3.168 -1.273 5.321 36.754 -2.681 -0.475 2.952 8.382 2.005 37.146 18 BB_G5C6:G30A31_BB B 5 ? B 31 ? B 6 ? B 30 ? 1 B C 6 1_555 B G 30 1_555 B U 7 1_555 B A 29 1_555 0.400 -1.561 3.487 -2.464 10.727 36.972 -3.694 -0.912 2.908 16.472 3.783 38.521 19 BB_C6U7:A29G30_BB B 6 ? B 30 ? B 7 ? B 29 ? 1 B U 7 1_555 B A 29 1_555 B C 8 1_555 B G 28 1_555 -0.668 -2.256 3.452 -3.222 8.651 29.545 -5.858 0.647 2.752 16.464 6.133 30.923 20 BB_U7C8:G28A29_BB B 7 ? B 29 ? B 8 ? B 28 ? 1 B C 8 1_555 B G 28 1_555 B U 9 1_555 B A 26 1_555 -2.820 -2.187 3.708 8.731 5.388 72.550 -2.021 2.667 3.251 4.531 -7.342 73.173 21 BB_C8U9:A26G28_BB B 8 ? B 28 ? B 9 ? B 26 ? 1 B U 9 1_555 B A 26 1_555 B G 12 1_555 B U 25 1_555 -0.607 -0.433 6.446 6.988 1.707 44.982 -0.854 1.987 6.269 2.214 -9.065 45.524 22 BB_U9G12:U25A26_BB B 9 ? B 26 ? B 12 ? B 25 ? 1 B G 12 1_555 B U 25 1_555 B G 13 1_555 B C 24 1_555 0.033 -1.222 3.169 -4.651 8.493 42.082 -2.443 -0.473 2.862 11.643 6.376 43.133 23 BB_G12G13:C24U25_BB B 12 ? B 25 ? B 13 ? B 24 ? 1 B G 13 1_555 B C 24 1_555 B C 14 1_555 B G 23 1_555 0.084 -1.552 3.202 3.546 5.720 30.786 -3.860 0.466 2.866 10.615 -6.580 31.495 24 BB_G13C14:G23C24_BB B 13 ? B 24 ? B 14 ? B 23 ? 1 B C 14 1_555 B G 23 1_555 B A 15 1_555 B U 22 1_555 0.301 -1.537 3.447 3.126 15.846 30.669 -4.918 -0.047 2.407 27.682 -5.461 34.571 25 BB_C14A15:U22G23_BB B 14 ? B 23 ? B 15 ? B 22 ? 1 B A 15 1_555 B U 22 1_555 B U 16 1_555 B G 21 1_555 0.613 -1.054 3.057 0.765 14.032 36.440 -3.079 -0.837 2.510 21.482 -1.171 38.970 26 BB_A15U16:G21U22_BB B 15 ? B 22 ? B 16 ? B 21 ? 1 B U 16 1_555 B G 21 1_555 B G 17 1_555 B A 20 1_555 -1.929 -0.861 2.816 1.601 10.900 42.356 -2.013 2.717 2.461 14.787 -2.173 43.702 27 BB_U16G17:A20G21_BB B 16 ? B 21 ? B 17 ? B 20 ? 1 C G 1 1_555 C C 35 1_555 C C 2 1_555 C G 34 1_555 0.787 -1.975 3.278 -1.861 0.816 39.586 -3.007 -1.377 3.199 1.203 2.745 39.636 28 CC_G1C2:G34C35_CC C 1 ? C 35 ? C 2 ? C 34 ? 1 C C 2 1_555 C G 34 1_555 C U 3 1_555 C A 33 1_555 -0.783 -1.959 3.171 -3.177 14.411 21.826 -7.452 1.027 1.672 33.566 7.400 26.297 29 CC_C2U3:A33G34_CC C 2 ? C 34 ? C 3 ? C 33 ? 1 C U 3 1_555 C A 33 1_555 C G 5 1_555 C A 31 1_555 -1.244 -1.542 6.696 -12.462 2.654 50.581 -2.126 -0.315 6.724 3.051 14.326 52.059 30 CC_U3G5:A31A33_CC C 3 ? C 33 ? C 5 ? C 31 ? 1 C G 5 1_555 C A 31 1_555 C C 6 1_555 C G 30 1_555 0.997 -1.750 3.201 -1.820 1.700 37.227 -2.951 -1.790 3.070 2.659 2.847 37.308 31 CC_G5C6:G30A31_CC C 5 ? C 31 ? C 6 ? C 30 ? 1 C C 6 1_555 C G 30 1_555 C U 7 1_555 C A 29 1_555 -0.042 -1.932 3.479 -3.029 5.251 32.079 -4.367 -0.461 3.123 9.397 5.421 32.632 32 CC_C6U7:A29G30_CC C 6 ? C 30 ? C 7 ? C 29 ? 1 C U 7 1_555 C A 29 1_555 C C 8 1_555 C G 28 1_555 -0.711 -2.450 3.166 -1.840 4.241 24.241 -6.917 1.152 2.749 9.983 4.332 24.671 33 CC_U7C8:G28A29_CC C 7 ? C 29 ? C 8 ? C 28 ? 1 C C 8 1_555 C G 28 1_555 C U 9 1_555 C A 26 1_555 -2.963 -2.162 3.904 7.103 9.372 76.685 -2.029 2.597 3.421 7.512 -5.693 77.444 34 CC_C8U9:A26G28_CC C 8 ? C 28 ? C 9 ? C 26 ? 1 C U 9 1_555 C A 26 1_555 C G 12 1_555 C U 25 1_555 -0.258 -0.374 6.542 3.470 -0.824 45.791 -0.337 0.929 6.512 -1.057 -4.451 45.922 35 CC_U9G12:U25A26_CC C 9 ? C 26 ? C 12 ? C 25 ? 1 C G 12 1_555 C U 25 1_555 C G 13 1_555 C C 24 1_555 -0.493 -1.834 3.171 -1.114 8.341 32.245 -4.458 0.692 2.642 14.708 1.965 33.296 36 CC_G12G13:C24U25_CC C 12 ? C 25 ? C 13 ? C 24 ? 1 C G 13 1_555 C C 24 1_555 C C 14 1_555 C G 23 1_555 -0.344 -1.493 3.213 1.034 10.302 32.407 -4.060 0.741 2.618 17.898 -1.797 33.978 37 CC_G13C14:G23C24_CC C 13 ? C 24 ? C 14 ? C 23 ? 1 C C 14 1_555 C G 23 1_555 C A 15 1_555 C U 22 1_555 0.705 -1.691 3.456 -0.883 15.552 32.432 -4.847 -1.263 2.403 26.053 1.480 35.889 38 CC_C14A15:U22G23_CC C 14 ? C 23 ? C 15 ? C 22 ? 1 C A 15 1_555 C U 22 1_555 C U 16 1_555 C G 21 1_555 0.202 -1.400 3.214 1.203 7.065 39.567 -2.798 -0.165 2.936 10.334 -1.760 40.185 39 CC_A15U16:G21U22_CC C 15 ? C 22 ? C 16 ? C 21 ? 1 C U 16 1_555 C G 21 1_555 C G 17 1_555 C A 20 1_555 -1.864 -1.084 2.870 1.385 11.300 44.787 -2.189 2.477 2.485 14.553 -1.784 46.139 40 CC_U16G17:A20G21_CC C 16 ? C 21 ? C 17 ? C 20 ? # _pdbx_audit_support.funding_organization 'Japan Agency for Medical Research and Development (AMED)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number JP25ama121014 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4FNJ _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 23KA _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.016257 _atom_sites.fract_transf_matrix[1][2] 0.009386 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018772 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009420 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol AS C CL N NA O P # loop_ #