HEADER HYDROLASE 19-FEB-26 23UY TITLE CRYSTAL STRUCTURE OF THE D51A VARIANT OF THE AQUIFEX AEOLICUS GYRB TITLE 2 ATPASE DOMAIN COMPLEXED WITH AMPPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE 2 TOPOISOMERASE SUBUNIT B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DNA GYRASE SUBUNIT B; COMPND 5 EC: 5.6.2.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: THE N-TERMINAL 9 RESIDUES, THE C-TERMINAL 12 RESIDUES, COMPND 9 RESIDUES 309-311 LACK INTERPRETABLE ELECTRON DENSITY AND WERE NOT COMPND 10 MODELED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS VF5; SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 GENE: GYRB, AQ_1026; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS DNA GYRASE, ATPASE, GHKL ATPASE, AQUIFEX AEOLICUS, THERMOPHILE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.FUKUI,T.MURAKAWA,T.YANO REVDAT 1 21-OCT-26 23UY 0 JRNL AUTH K.FUKUI,A.SHIBUYA,T.MURAKAWA,T.YANO JRNL TITL TWO GLU/ASP RESIDUES COOPERATIVELY MEDIATE AN EARLY STEP OF JRNL TITL 2 ATP HYDROLYSIS IN GHKL ATPASES MUTL AND GYRB. JRNL REF ELIFE V. 15 2026 JRNL REFN ESSN 2050-084X JRNL PMID 42788712 JRNL DOI 10.7554/ELIFE.111443 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 111362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0300 - 3.9300 1.00 8238 150 0.1690 0.2005 REMARK 3 2 3.9300 - 3.1200 1.00 7962 147 0.1775 0.2016 REMARK 3 3 3.1200 - 2.7300 1.00 7898 143 0.2054 0.2631 REMARK 3 4 2.7300 - 2.4800 1.00 7877 144 0.2077 0.2503 REMARK 3 5 2.4800 - 2.3000 1.00 7807 143 0.1963 0.2190 REMARK 3 6 2.3000 - 2.1600 1.00 7829 143 0.1989 0.2379 REMARK 3 7 2.1600 - 2.0500 1.00 7781 143 0.2085 0.2338 REMARK 3 8 2.0500 - 1.9700 1.00 7781 142 0.2048 0.2254 REMARK 3 9 1.9700 - 1.8900 0.99 7735 141 0.2260 0.2840 REMARK 3 10 1.8900 - 1.8200 1.00 7734 142 0.2433 0.3011 REMARK 3 11 1.8200 - 1.7700 1.00 7736 141 0.2906 0.3123 REMARK 3 12 1.7700 - 1.7200 0.99 7713 141 0.3116 0.3487 REMARK 3 13 1.7200 - 1.6700 0.99 7684 140 0.3194 0.3105 REMARK 3 14 1.6700 - 1.6300 0.98 7588 139 0.3546 0.3601 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.244 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.415 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5936 REMARK 3 ANGLE : 0.933 8042 REMARK 3 CHIRALITY : 0.061 919 REMARK 3 PLANARITY : 0.007 1021 REMARK 3 DIHEDRAL : 11.434 832 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 96.5967 100.4353 27.2170 REMARK 3 T TENSOR REMARK 3 T11: 0.2312 T22: 0.2029 REMARK 3 T33: 0.1842 T12: 0.0325 REMARK 3 T13: -0.0363 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.6090 L22: 0.8512 REMARK 3 L33: 0.3983 L12: 0.1318 REMARK 3 L13: -0.0684 L23: 0.1389 REMARK 3 S TENSOR REMARK 3 S11: -0.0558 S12: -0.0024 S13: 0.1078 REMARK 3 S21: -0.0465 S22: 0.0795 S23: 0.1371 REMARK 3 S31: -0.0530 S32: -0.0222 S33: -0.0310 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 23UY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-FEB-26. REMARK 100 THE DEPOSITION ID IS D_1300070482. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111362 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 45.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M TRIS PH REMARK 280 7.5, 45% V/V (+/-)-2-METHYL-2,4-PENTANEDIOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.02900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.85950 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.02900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.85950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 GLN A 5 REMARK 465 SER A 6 REMARK 465 GLN A 7 REMARK 465 THR A 8 REMARK 465 PRO A 9 REMARK 465 GLU A 310 REMARK 465 LEU A 311 REMARK 465 LYS A 312 REMARK 465 ALA A 386 REMARK 465 ARG A 387 REMARK 465 GLU A 388 REMARK 465 ALA A 389 REMARK 465 ALA A 390 REMARK 465 LYS A 391 REMARK 465 LYS A 392 REMARK 465 ALA A 393 REMARK 465 LYS A 394 REMARK 465 GLU A 395 REMARK 465 LEU A 396 REMARK 465 VAL A 397 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LYS B 3 REMARK 465 ARG B 4 REMARK 465 GLN B 5 REMARK 465 SER B 6 REMARK 465 GLN B 7 REMARK 465 THR B 8 REMARK 465 PRO B 9 REMARK 465 GLN B 10 REMARK 465 ARG B 387 REMARK 465 GLU B 388 REMARK 465 ALA B 389 REMARK 465 ALA B 390 REMARK 465 LYS B 391 REMARK 465 LYS B 392 REMARK 465 ALA B 393 REMARK 465 LYS B 394 REMARK 465 GLU B 395 REMARK 465 LEU B 396 REMARK 465 VAL B 397 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 10 CG CD OE1 NE2 REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 TYR A 267 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 ARG A 270 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 306 CG CD CE NZ REMARK 470 LEU A 307 CB CG CD1 CD2 REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 GLU A 367 CG CD OE1 OE2 REMARK 470 LYS A 368 CG CD CE NZ REMARK 470 GLU A 378 CG CD OE1 OE2 REMARK 470 GLU A 382 CD OE1 OE2 REMARK 470 ARG B 40 NE CZ NH1 NH2 REMARK 470 ARG B 63 NE CZ NH1 NH2 REMARK 470 LYS B 113 CG CD CE NZ REMARK 470 GLU B 205 CD OE1 OE2 REMARK 470 LYS B 222 CB CG CD CE NZ REMARK 470 ASP B 224 CB CG OD1 OD2 REMARK 470 ARG B 225 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS B 232 CG CD CE NZ REMARK 470 LEU B 234 CG CD1 CD2 REMARK 470 LYS B 238 CG CD CE NZ REMARK 470 GLU B 239 CG CD OE1 OE2 REMARK 470 LYS B 243 CG CD CE NZ REMARK 470 ASP B 244 CG OD1 OD2 REMARK 470 LYS B 265 CG CD CE NZ REMARK 470 ASP B 266 CG OD1 OD2 REMARK 470 TYR B 267 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 268 CG CD CE NZ REMARK 470 ARG B 270 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 300 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 306 CG CD CE NZ REMARK 470 LEU B 307 CG CD1 CD2 REMARK 470 LYS B 309 CG CD CE NZ REMARK 470 LYS B 313 CG CD CE NZ REMARK 470 GLU B 318 CD OE1 OE2 REMARK 470 GLU B 367 CG CD OE1 OE2 REMARK 470 LYS B 368 CG CD CE NZ REMARK 470 LYS B 369 CG CD CE NZ REMARK 470 ASP B 371 CG OD1 OD2 REMARK 470 LYS B 374 CG CD CE NZ REMARK 470 GLU B 378 CG CD OE1 OE2 REMARK 470 LYS B 379 CG CD CE NZ REMARK 470 GLU B 382 CG CD OE1 OE2 REMARK 470 LEU B 385 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 112 50.90 -111.10 REMARK 500 TYR A 117 65.86 -118.24 REMARK 500 LEU A 121 -10.42 -161.91 REMARK 500 LYS A 369 71.04 -105.67 REMARK 500 LYS B 112 49.45 -106.62 REMARK 500 LEU B 121 -9.35 -162.38 REMARK 500 TYR B 267 -13.05 69.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 52 OD1 REMARK 620 2 ANP A 402 O3G 162.8 REMARK 620 3 ANP A 402 O2B 85.3 95.2 REMARK 620 4 ANP A 402 O2A 96.3 100.9 85.7 REMARK 620 5 HOH A 520 O 73.6 89.2 92.3 169.9 REMARK 620 6 HOH A 525 O 95.2 86.1 174.4 88.7 93.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 100 O REMARK 620 2 MET A 103 O 95.2 REMARK 620 3 ALA A 106 O 125.5 95.9 REMARK 620 4 GLY A 123 O 163.9 79.1 70.3 REMARK 620 5 ANP A 402 O1A 92.8 155.3 98.3 86.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 52 OD1 REMARK 620 2 ANP B 402 O1B 88.5 REMARK 620 3 ANP B 402 O1G 167.9 89.6 REMARK 620 4 ANP B 402 O1A 93.1 83.2 98.6 REMARK 620 5 HOH B 528 O 94.0 172.0 89.6 89.0 REMARK 620 6 HOH B 529 O 79.3 95.5 89.1 172.3 92.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 100 O REMARK 620 2 MET B 103 O 91.2 REMARK 620 3 ALA B 106 O 124.6 96.9 REMARK 620 4 GLY B 123 O 160.7 77.5 73.0 REMARK 620 5 ANP B 402 O2A 92.5 153.7 102.2 90.9 REMARK 620 N 1 2 3 4 DBREF 23UY A 1 397 UNP O67137 TOP4B_AQUAE 1 397 DBREF 23UY B 1 397 UNP O67137 TOP4B_AQUAE 1 397 SEQADV 23UY ALA A 51 UNP O67137 ASP 51 VARIANT SEQADV 23UY ALA B 51 UNP O67137 ASP 51 VARIANT SEQRES 1 A 397 MET LYS LYS ARG GLN SER GLN THR PRO GLN GLU TYR THR SEQRES 2 A 397 ALA GLU ALA ILE LYS ALA VAL SER GLY LEU GLU HIS VAL SEQRES 3 A 397 ARG LEU ARG PRO ALA MET TYR ILE GLY ASP ILE GLY GLU SEQRES 4 A 397 ARG GLY LEU HIS HIS LEU ILE TRP GLU ILE LEU ALA ASN SEQRES 5 A 397 ALA VAL ASP GLU ALA VAL ALA GLY TYR ALA ARG ASN ILE SEQRES 6 A 397 SER VAL THR ILE HIS ARG ASP ASN SER VAL THR VAL GLU SEQRES 7 A 397 ASP ASP GLY ARG GLY ILE PRO VAL ASP ILE HIS PRO GLU SEQRES 8 A 397 THR GLY LYS PRO ALA VAL GLU MET VAL PHE THR MET LEU SEQRES 9 A 397 GLY ALA GLY GLY LYS PHE GLU LYS LYS VAL TYR THR TYR SEQRES 10 A 397 SER GLY GLY LEU HIS GLY VAL GLY ALA SER VAL VAL ASN SEQRES 11 A 397 ALA LEU SER GLU TRP LEU ILE VAL GLU VAL TYR ARG ASP SEQRES 12 A 397 GLY LYS ILE TYR ARG MET ALA PHE LYS ARG GLY GLU VAL SEQRES 13 A 397 VAL GLU PRO LEU HIS VAL VAL GLY GLU THR LYS LYS ARG SEQRES 14 A 397 GLY THR LYS VAL SER PHE LYS PRO ASP PRO GLU ILE PHE SEQRES 15 A 397 GLU THR THR GLU ILE LYS PHE ASP ILE VAL GLU LYS ARG SEQRES 16 A 397 VAL ARG GLU LEU ALA TYR LEU ASN PRO GLU VAL LYS PHE SEQRES 17 A 397 GLU LEU THR ASP GLU ARG LEU GLY LYS HIS LEU ILE TYR SEQRES 18 A 397 LYS PHE ASP ARG GLY ILE GLU GLU LEU VAL LYS TYR LEU SEQRES 19 A 397 ASN GLU GLY LYS GLU PRO LEU PHE LYS ASP ILE ILE ARG SEQRES 20 A 397 ILE GLN GLY GLU LYS GLU GLY VAL ILE VAL ASP ILE ALA SEQRES 21 A 397 PHE GLN TYR VAL LYS ASP TYR LYS GLU ARG ILE GLU SER SEQRES 22 A 397 PHE VAL ASN ASN ILE LYS THR VAL GLU GLY GLY THR HIS SEQRES 23 A 397 VAL THR GLY PHE ARG SER GLY LEU SER LYS ALA VAL ILE SEQRES 24 A 397 ARG MET ALA GLN GLY LEU LYS LEU ALA LYS GLU LEU LYS SEQRES 25 A 397 LYS SER PHE THR GLY GLU ASP VAL ARG GLU GLY LEU THR SEQRES 26 A 397 ALA VAL VAL ALA CYS LYS VAL PRO ASN PRO GLN PHE GLU SEQRES 27 A 397 GLY GLN THR LYS THR LYS LEU GLY ASN GLN ASN VAL LYS SEQRES 28 A 397 GLN ILE VAL GLU SER ILE THR TYR ASP PHE LEU THR SER SEQRES 29 A 397 TYR PHE GLU LYS LYS ARG ASP VAL LEU LYS ALA ILE VAL SEQRES 30 A 397 GLU LYS ALA ILE GLU ALA ALA LEU ALA ARG GLU ALA ALA SEQRES 31 A 397 LYS LYS ALA LYS GLU LEU VAL SEQRES 1 B 397 MET LYS LYS ARG GLN SER GLN THR PRO GLN GLU TYR THR SEQRES 2 B 397 ALA GLU ALA ILE LYS ALA VAL SER GLY LEU GLU HIS VAL SEQRES 3 B 397 ARG LEU ARG PRO ALA MET TYR ILE GLY ASP ILE GLY GLU SEQRES 4 B 397 ARG GLY LEU HIS HIS LEU ILE TRP GLU ILE LEU ALA ASN SEQRES 5 B 397 ALA VAL ASP GLU ALA VAL ALA GLY TYR ALA ARG ASN ILE SEQRES 6 B 397 SER VAL THR ILE HIS ARG ASP ASN SER VAL THR VAL GLU SEQRES 7 B 397 ASP ASP GLY ARG GLY ILE PRO VAL ASP ILE HIS PRO GLU SEQRES 8 B 397 THR GLY LYS PRO ALA VAL GLU MET VAL PHE THR MET LEU SEQRES 9 B 397 GLY ALA GLY GLY LYS PHE GLU LYS LYS VAL TYR THR TYR SEQRES 10 B 397 SER GLY GLY LEU HIS GLY VAL GLY ALA SER VAL VAL ASN SEQRES 11 B 397 ALA LEU SER GLU TRP LEU ILE VAL GLU VAL TYR ARG ASP SEQRES 12 B 397 GLY LYS ILE TYR ARG MET ALA PHE LYS ARG GLY GLU VAL SEQRES 13 B 397 VAL GLU PRO LEU HIS VAL VAL GLY GLU THR LYS LYS ARG SEQRES 14 B 397 GLY THR LYS VAL SER PHE LYS PRO ASP PRO GLU ILE PHE SEQRES 15 B 397 GLU THR THR GLU ILE LYS PHE ASP ILE VAL GLU LYS ARG SEQRES 16 B 397 VAL ARG GLU LEU ALA TYR LEU ASN PRO GLU VAL LYS PHE SEQRES 17 B 397 GLU LEU THR ASP GLU ARG LEU GLY LYS HIS LEU ILE TYR SEQRES 18 B 397 LYS PHE ASP ARG GLY ILE GLU GLU LEU VAL LYS TYR LEU SEQRES 19 B 397 ASN GLU GLY LYS GLU PRO LEU PHE LYS ASP ILE ILE ARG SEQRES 20 B 397 ILE GLN GLY GLU LYS GLU GLY VAL ILE VAL ASP ILE ALA SEQRES 21 B 397 PHE GLN TYR VAL LYS ASP TYR LYS GLU ARG ILE GLU SER SEQRES 22 B 397 PHE VAL ASN ASN ILE LYS THR VAL GLU GLY GLY THR HIS SEQRES 23 B 397 VAL THR GLY PHE ARG SER GLY LEU SER LYS ALA VAL ILE SEQRES 24 B 397 ARG MET ALA GLN GLY LEU LYS LEU ALA LYS GLU LEU LYS SEQRES 25 B 397 LYS SER PHE THR GLY GLU ASP VAL ARG GLU GLY LEU THR SEQRES 26 B 397 ALA VAL VAL ALA CYS LYS VAL PRO ASN PRO GLN PHE GLU SEQRES 27 B 397 GLY GLN THR LYS THR LYS LEU GLY ASN GLN ASN VAL LYS SEQRES 28 B 397 GLN ILE VAL GLU SER ILE THR TYR ASP PHE LEU THR SER SEQRES 29 B 397 TYR PHE GLU LYS LYS ARG ASP VAL LEU LYS ALA ILE VAL SEQRES 30 B 397 GLU LYS ALA ILE GLU ALA ALA LEU ALA ARG GLU ALA ALA SEQRES 31 B 397 LYS LYS ALA LYS GLU LEU VAL HET MG A 401 1 HET ANP A 402 31 HET NA A 403 1 HET MPD A 404 8 HET MPD A 405 8 HET ACT A 406 4 HET MG B 401 1 HET ANP B 402 31 HET NA B 403 1 HET MPD B 404 8 HETNAM MG MAGNESIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM NA SODIUM ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM ACT ACETATE ION FORMUL 3 MG 2(MG 2+) FORMUL 4 ANP 2(C10 H17 N6 O12 P3) FORMUL 5 NA 2(NA 1+) FORMUL 6 MPD 3(C6 H14 O2) FORMUL 8 ACT C2 H3 O2 1- FORMUL 13 HOH *226(H2 O) HELIX 1 AA1 THR A 13 ILE A 17 5 5 HELIX 2 AA2 SER A 21 ARG A 29 1 9 HELIX 3 AA3 ARG A 29 GLY A 35 1 7 HELIX 4 AA4 GLY A 38 ALA A 59 1 22 HELIX 5 AA5 PRO A 95 MET A 103 1 9 HELIX 6 AA6 VAL A 124 LEU A 132 1 9 HELIX 7 AA7 LYS A 188 ASN A 203 1 16 HELIX 8 AA8 ARG A 225 ASN A 235 1 11 HELIX 9 AA9 GLY A 284 GLN A 303 1 20 HELIX 10 AB1 THR A 316 GLU A 322 1 7 HELIX 11 AB2 ASN A 349 LYS A 369 1 21 HELIX 12 AB3 LYS A 369 LEU A 385 1 17 HELIX 13 AB4 THR B 13 ILE B 17 5 5 HELIX 14 AB5 SER B 21 ARG B 29 1 9 HELIX 15 AB6 ARG B 29 GLY B 35 1 7 HELIX 16 AB7 GLY B 38 ALA B 59 1 22 HELIX 17 AB8 PRO B 95 MET B 103 1 9 HELIX 18 AB9 VAL B 124 LEU B 132 1 9 HELIX 19 AC1 LYS B 188 ASN B 203 1 16 HELIX 20 AC2 GLY B 226 ASN B 235 1 10 HELIX 21 AC3 GLY B 284 GLN B 303 1 20 HELIX 22 AC4 ALA B 308 LYS B 313 1 6 HELIX 23 AC5 THR B 316 ARG B 321 1 6 HELIX 24 AC6 ASN B 347 LYS B 369 1 23 HELIX 25 AC7 LYS B 369 ALA B 386 1 18 SHEET 1 AA1 2 LYS A 18 ALA A 19 0 SHEET 2 AA1 2 ALA B 106 GLY B 107 -1 O GLY B 107 N LYS A 18 SHEET 1 AA2 8 GLU A 155 GLU A 165 0 SHEET 2 AA2 8 LYS A 145 LYS A 152 -1 N ILE A 146 O VAL A 163 SHEET 3 AA2 8 SER A 133 ARG A 142 -1 N VAL A 140 O TYR A 147 SHEET 4 AA2 8 GLY A 170 PRO A 177 -1 O SER A 174 N ILE A 137 SHEET 5 AA2 8 VAL A 75 ASP A 79 -1 N VAL A 77 O VAL A 173 SHEET 6 AA2 8 ASN A 64 ILE A 69 -1 N SER A 66 O GLU A 78 SHEET 7 AA2 8 LYS A 207 ASP A 212 1 O GLU A 209 N VAL A 67 SHEET 8 AA2 8 LYS A 217 TYR A 221 -1 O TYR A 221 N PHE A 208 SHEET 1 AA3 2 ALA A 106 GLY A 107 0 SHEET 2 AA3 2 LYS B 18 ALA B 19 -1 O LYS B 18 N GLY A 107 SHEET 1 AA4 5 ILE A 246 LYS A 252 0 SHEET 2 AA4 5 VAL A 255 TYR A 263 -1 O VAL A 257 N GLY A 250 SHEET 3 AA4 5 LEU A 324 LYS A 331 -1 O VAL A 327 N ALA A 260 SHEET 4 AA4 5 ARG A 270 VAL A 275 1 N ARG A 270 O LEU A 324 SHEET 5 AA4 5 ILE A 278 LYS A 279 -1 O ILE A 278 N VAL A 275 SHEET 1 AA5 8 GLU B 155 GLU B 165 0 SHEET 2 AA5 8 LYS B 145 LYS B 152 -1 N ILE B 146 O GLY B 164 SHEET 3 AA5 8 SER B 133 ARG B 142 -1 N VAL B 140 O TYR B 147 SHEET 4 AA5 8 GLY B 170 PRO B 177 -1 O SER B 174 N ILE B 137 SHEET 5 AA5 8 VAL B 75 ASP B 79 -1 N VAL B 77 O VAL B 173 SHEET 6 AA5 8 ASN B 64 ILE B 69 -1 N SER B 66 O GLU B 78 SHEET 7 AA5 8 LYS B 207 ASP B 212 1 O THR B 211 N ILE B 69 SHEET 8 AA5 8 LYS B 217 ILE B 220 -1 O LEU B 219 N LEU B 210 SHEET 1 AA6 5 ILE B 246 LYS B 252 0 SHEET 2 AA6 5 VAL B 255 TYR B 263 -1 O ILE B 259 N ILE B 248 SHEET 3 AA6 5 LEU B 324 LYS B 331 -1 O ALA B 329 N ASP B 258 SHEET 4 AA6 5 ARG B 270 VAL B 275 1 N ARG B 270 O LEU B 324 SHEET 5 AA6 5 ILE B 278 LYS B 279 -1 O ILE B 278 N VAL B 275 LINK OD1 ASN A 52 MG MG A 401 1555 1555 2.13 LINK O VAL A 100 NA NA A 403 1555 1555 2.77 LINK O MET A 103 NA NA A 403 1555 1555 2.87 LINK O ALA A 106 NA NA A 403 1555 1555 2.95 LINK O GLY A 123 NA NA A 403 1555 1555 2.95 LINK MG MG A 401 O3G ANP A 402 1555 1555 1.98 LINK MG MG A 401 O2B ANP A 402 1555 1555 2.19 LINK MG MG A 401 O2A ANP A 402 1555 1555 2.14 LINK MG MG A 401 O HOH A 520 1555 1555 2.29 LINK MG MG A 401 O HOH A 525 1555 1555 2.05 LINK O1A ANP A 402 NA NA A 403 1555 1555 2.86 LINK OD1 ASN B 52 MG MG B 401 1555 1555 2.05 LINK O VAL B 100 NA NA B 403 1555 1555 2.88 LINK O MET B 103 NA NA B 403 1555 1555 3.01 LINK O ALA B 106 NA NA B 403 1555 1555 2.86 LINK O GLY B 123 NA NA B 403 1555 1555 2.88 LINK MG MG B 401 O1B ANP B 402 1555 1555 2.24 LINK MG MG B 401 O1G ANP B 402 1555 1555 2.07 LINK MG MG B 401 O1A ANP B 402 1555 1555 2.19 LINK MG MG B 401 O HOH B 528 1555 1555 2.00 LINK MG MG B 401 O HOH B 529 1555 1555 2.22 LINK O2A ANP B 402 NA NA B 403 1555 1555 2.76 CRYST1 75.217 90.058 131.719 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013295 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011104 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007592 0.00000 CONECT 338 5746 CONECT 693 5778 CONECT 718 5778 CONECT 738 5778 CONECT 868 5778 CONECT 3232 5799 CONECT 3583 5831 CONECT 3608 5831 CONECT 3628 5831 CONECT 3754 5831 CONECT 5746 338 5750 5753 5757 CONECT 5746 5859 5864 CONECT 5747 5748 5749 5750 5754 CONECT 5748 5747 CONECT 5749 5747 CONECT 5750 5746 5747 CONECT 5751 5752 5753 5754 5758 CONECT 5752 5751 CONECT 5753 5746 5751 CONECT 5754 5747 5751 CONECT 5755 5756 5757 5758 5759 CONECT 5756 5755 5778 CONECT 5757 5746 5755 CONECT 5758 5751 5755 CONECT 5759 5755 5760 CONECT 5760 5759 5761 CONECT 5761 5760 5762 5763 CONECT 5762 5761 5767 CONECT 5763 5761 5764 5765 CONECT 5764 5763 CONECT 5765 5763 5766 5767 CONECT 5766 5765 CONECT 5767 5762 5765 5768 CONECT 5768 5767 5769 5777 CONECT 5769 5768 5770 CONECT 5770 5769 5771 CONECT 5771 5770 5772 5777 CONECT 5772 5771 5773 5774 CONECT 5773 5772 CONECT 5774 5772 5775 CONECT 5775 5774 5776 CONECT 5776 5775 5777 CONECT 5777 5768 5771 5776 CONECT 5778 693 718 738 868 CONECT 5778 5756 CONECT 5779 5780 CONECT 5780 5779 5781 5782 5783 CONECT 5781 5780 CONECT 5782 5780 CONECT 5783 5780 5784 CONECT 5784 5783 5785 5786 CONECT 5785 5784 CONECT 5786 5784 CONECT 5787 5788 CONECT 5788 5787 5789 5790 5791 CONECT 5789 5788 CONECT 5790 5788 CONECT 5791 5788 5792 CONECT 5792 5791 5793 5794 CONECT 5793 5792 CONECT 5794 5792 CONECT 5795 5796 5797 5798 CONECT 5796 5795 CONECT 5797 5795 CONECT 5798 5795 CONECT 5799 3232 5801 5805 5809 CONECT 5799 6009 6010 CONECT 5800 5801 5802 5803 5807 CONECT 5801 5799 5800 CONECT 5802 5800 CONECT 5803 5800 CONECT 5804 5805 5806 5807 5811 CONECT 5805 5799 5804 CONECT 5806 5804 CONECT 5807 5800 5804 CONECT 5808 5809 5810 5811 5812 CONECT 5809 5799 5808 CONECT 5810 5808 5831 CONECT 5811 5804 5808 CONECT 5812 5808 5813 CONECT 5813 5812 5814 CONECT 5814 5813 5815 5816 CONECT 5815 5814 5820 CONECT 5816 5814 5817 5818 CONECT 5817 5816 CONECT 5818 5816 5819 5820 CONECT 5819 5818 CONECT 5820 5815 5818 5821 CONECT 5821 5820 5822 5830 CONECT 5822 5821 5823 CONECT 5823 5822 5824 CONECT 5824 5823 5825 5830 CONECT 5825 5824 5826 5827 CONECT 5826 5825 CONECT 5827 5825 5828 CONECT 5828 5827 5829 CONECT 5829 5828 5830 CONECT 5830 5821 5824 5829 CONECT 5831 3583 3608 3628 3754 CONECT 5831 5810 CONECT 5832 5833 CONECT 5833 5832 5834 5835 5836 CONECT 5834 5833 CONECT 5835 5833 CONECT 5836 5833 5837 CONECT 5837 5836 5838 5839 CONECT 5838 5837 CONECT 5839 5837 CONECT 5859 5746 CONECT 5864 5746 CONECT 6009 5799 CONECT 6010 5799 MASTER 394 0 10 25 30 0 0 6 6063 2 112 62 END