HEADER LUMINESCENT PROTEIN 12-MAR-26 24NE TITLE CRYSTAL STRUCTURE OF CYPRIDINA LUCIFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LUCIFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYPRIDINA NOCTILUCA; SOURCE 3 ORGANISM_TAXID: 261518; SOURCE 4 GENE: CNL; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F GNTI-; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDNA3.4-TOPO KEYWDS LUCIFERASE, LUMINESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.KIHIRA,R.YASUNO,Y.MITANI,Y.OHMIYA REVDAT 1 08-APR-26 24NE 0 JRNL AUTH K.KIHIRA,R.YASUNO,S.KANIE,C.WU,Y.MITANI,Y.OHMIYA JRNL TITL THREE-DIMENSIONAL STRUCTURE OF CYPRIDINA LUCIFERASE JRNL TITL 2 ILLUMINATES THE MECHANISM OF BIOLUMINESCENCE OF JRNL TITL 3 IMIDAZOPYRAZINONE-TYPE LUCIFERIN. JRNL REF INT.J.BIOL.MACROMOL. V. 357 51583 2026 JRNL REFN ISSN 0141-8130 JRNL PMID 41865923 JRNL DOI 10.1016/J.IJBIOMAC.2026.151583 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1198 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1626 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.4840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4017 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 100.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.61000 REMARK 3 B22 (A**2) : 5.61000 REMARK 3 B33 (A**2) : -18.19000 REMARK 3 B12 (A**2) : 2.80000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.571 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.348 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.281 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.033 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4150 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3794 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5642 ; 1.462 ; 1.827 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8802 ; 0.467 ; 1.765 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 514 ; 5.683 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 22 ; 3.516 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 690 ;13.315 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 620 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4868 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 908 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2062 ; 8.383 ; 6.762 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2062 ; 8.379 ; 6.761 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2574 ;11.888 ;12.191 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2575 ;11.885 ;12.191 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2088 ; 8.991 ; 7.247 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2089 ; 8.989 ; 7.249 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3069 ;12.737 ;13.177 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 16888 ;17.438 ;82.380 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 16889 ;17.439 ;82.380 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 602 REMARK 3 ORIGIN FOR THE GROUP (A): 76.4256 4.7421 25.3396 REMARK 3 T TENSOR REMARK 3 T11: 0.3768 T22: 0.0299 REMARK 3 T33: 0.2867 T12: 0.0492 REMARK 3 T13: 0.0302 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.7576 L22: 1.9853 REMARK 3 L33: 2.5468 L12: 0.9322 REMARK 3 L13: 0.7506 L23: 1.2698 REMARK 3 S TENSOR REMARK 3 S11: -0.0280 S12: 0.0699 S13: -0.0682 REMARK 3 S21: -0.2666 S22: 0.0559 S23: -0.1284 REMARK 3 S31: 0.0619 S32: 0.2387 S33: -0.0279 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 24NE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAR-26. REMARK 100 THE DEPOSITION ID IS D_1300071406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 2.70001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53534 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 294.0 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 48.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 152.0 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25MG/ML CLUC, 3% POLYETHYLENE GLYCOL REMARK 280 MONOMETHYL ETHER 2000, 7% POLYPROPYLENE GLYCOL 400, 2M AMMONIUM REMARK 280 PHOSPHATE, PH 7, COUNTER-DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 93.35500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 93.35500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 93.35500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 93.35500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 93.35500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 93.35500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 17 REMARK 465 PRO A 18 REMARK 465 GLN A 19 REMARK 465 ASP A 20 REMARK 465 GLY A 451 REMARK 465 ASN A 452 REMARK 465 TYR A 453 REMARK 465 ASN A 454 REMARK 465 GLN A 455 REMARK 465 ASP A 456 REMARK 465 PHE A 457 REMARK 465 SER A 458 REMARK 465 ASP A 459 REMARK 465 ASP A 460 REMARK 465 SER A 461 REMARK 465 PHE A 462 REMARK 465 ASP A 463 REMARK 465 ALA A 464 REMARK 465 GLU A 465 REMARK 465 GLY A 466 REMARK 465 ALA A 467 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 200 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 514 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 62 -137.97 51.75 REMARK 500 ILE A 76 87.86 67.20 REMARK 500 ASP A 112 66.00 70.92 REMARK 500 ALA A 138 -122.38 54.65 REMARK 500 GLU A 170 -4.62 73.02 REMARK 500 PHE A 189 -110.27 60.32 REMARK 500 ALA A 309 51.83 -93.92 REMARK 500 ALA A 310 78.79 -162.18 REMARK 500 PRO A 338 46.39 -78.45 REMARK 500 TYR A 365 -169.32 -126.26 REMARK 500 ALA A 423 64.62 29.56 REMARK 500 GLN A 432 -8.68 66.98 REMARK 500 PRO A 441 -168.67 -75.79 REMARK 500 REMARK 500 REMARK: NULL DBREF 24NE A 19 553 UNP Q75R40 Q75R40_9CRUS 19 553 SEQADV 24NE GLY A 17 UNP Q75R40 EXPRESSION TAG SEQADV 24NE PRO A 18 UNP Q75R40 EXPRESSION TAG SEQRES 1 A 537 GLY PRO GLN ASP CYS PRO TYR GLU PRO ASP PRO PRO ASN SEQRES 2 A 537 THR VAL PRO THR SER CYS GLU ALA LYS GLU GLY GLU CYS SEQRES 3 A 537 ILE ASP SER SER CYS GLY THR CYS THR ARG ASP ILE LEU SEQRES 4 A 537 SER ASP GLY LEU CYS GLU ASN LYS PRO GLY LYS THR CYS SEQRES 5 A 537 CYS ARG MET CYS GLN TYR VAL ILE GLU CYS ARG VAL GLU SEQRES 6 A 537 ALA ALA GLY TRP PHE ARG THR PHE TYR GLY LYS ARG PHE SEQRES 7 A 537 GLN PHE GLN GLU PRO GLY THR TYR VAL LEU GLY GLN GLY SEQRES 8 A 537 THR LYS GLY GLY ASP TRP LYS VAL SER ILE THR LEU GLU SEQRES 9 A 537 ASN LEU ASP GLY THR LYS GLY ALA VAL LEU THR LYS THR SEQRES 10 A 537 ARG LEU GLU VAL ALA GLY ASP ILE ILE ASP ILE ALA GLN SEQRES 11 A 537 ALA THR GLU ASN PRO ILE THR VAL ASN GLY GLY ALA ASP SEQRES 12 A 537 PRO ILE ILE ALA ASN PRO TYR THR ILE GLY GLU VAL THR SEQRES 13 A 537 ILE ALA VAL VAL GLU MET PRO GLY PHE ASN ILE THR VAL SEQRES 14 A 537 ILE GLU PHE PHE LYS LEU ILE VAL ILE ASP ILE LEU GLY SEQRES 15 A 537 GLY ARG SER VAL ARG ILE ALA PRO ASP THR ALA ASN LYS SEQRES 16 A 537 GLY MET ILE SER GLY LEU CYS GLY ASP LEU LYS MET MET SEQRES 17 A 537 GLU ASP THR ASP PHE THR SER ASP PRO GLU GLN LEU ALA SEQRES 18 A 537 ILE GLN PRO LYS ILE ASN GLN GLU PHE ASP GLY CYS PRO SEQRES 19 A 537 LEU TYR GLY ASN PRO ASP ASP VAL ALA TYR CYS LYS GLY SEQRES 20 A 537 LEU LEU GLU PRO TYR LYS ASP SER CYS ARG ASN PRO ILE SEQRES 21 A 537 ASN PHE TYR TYR TYR THR ILE SER CYS ALA PHE ALA ARG SEQRES 22 A 537 CYS MET GLY GLY ASP GLU ARG ALA SER HIS VAL LEU LEU SEQRES 23 A 537 ASP TYR ARG GLU THR CYS ALA ALA PRO GLU THR ARG GLY SEQRES 24 A 537 THR CYS VAL LEU SER GLY HIS THR PHE TYR ASP THR PHE SEQRES 25 A 537 ASP LYS ALA ARG TYR GLN PHE GLN GLY PRO CYS LYS GLU SEQRES 26 A 537 ILE LEU MET ALA ALA ASP CYS PHE TRP ASN THR TRP ASP SEQRES 27 A 537 VAL LYS VAL SER HIS ARG ASN VAL ASP SER TYR THR GLU SEQRES 28 A 537 VAL GLU LYS VAL ARG ILE ARG LYS GLN SER THR VAL VAL SEQRES 29 A 537 GLU LEU ILE VAL ASP GLY LYS GLN ILE LEU VAL GLY GLY SEQRES 30 A 537 GLU ALA VAL SER ILE PRO TYR SER SER GLN ASN THR SER SEQRES 31 A 537 ILE TYR TRP GLN ASP GLY ASP ILE LEU THR THR ALA ILE SEQRES 32 A 537 LEU PRO GLU ALA LEU VAL VAL LYS PHE ASN PHE LYS GLN SEQRES 33 A 537 LEU LEU VAL VAL HIS ILE ARG ASP PRO PHE ASP GLY LYS SEQRES 34 A 537 THR CYS GLY ILE CYS GLY ASN TYR ASN GLN ASP PHE SER SEQRES 35 A 537 ASP ASP SER PHE ASP ALA GLU GLY ALA CYS ASP LEU THR SEQRES 36 A 537 PRO ASN PRO PRO GLY CYS THR GLU GLU GLN LYS PRO GLU SEQRES 37 A 537 ALA GLU ARG LEU CYS ASN SER LEU PHE ALA GLY GLN SER SEQRES 38 A 537 ASP LEU ASP GLN LYS CYS ASN VAL CYS HIS LYS PRO ASP SEQRES 39 A 537 ARG VAL GLU ARG CYS MET TYR GLU TYR CYS LEU ARG GLY SEQRES 40 A 537 GLN GLN GLY PHE CYS ASP HIS ALA TRP GLU PHE LYS LYS SEQRES 41 A 537 GLU CYS TYR ILE LYS HIS GLY ASP THR LEU GLU VAL PRO SEQRES 42 A 537 ASP GLU CYS LYS HET NAG A 601 14 HET NAG A 602 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 2(C8 H15 N O6) HELIX 1 AA1 GLY A 156 ALA A 158 5 3 HELIX 2 AA2 THR A 208 LYS A 211 5 4 HELIX 3 AA3 ASP A 232 GLN A 239 1 8 HELIX 4 AA4 PRO A 240 ILE A 242 5 3 HELIX 5 AA5 ASN A 254 GLU A 266 1 13 HELIX 6 AA6 PRO A 267 LYS A 269 5 3 HELIX 7 AA7 ASN A 277 GLY A 292 1 16 HELIX 8 AA8 GLY A 293 ALA A 309 1 17 HELIX 9 AA9 GLN A 481 SER A 491 1 11 HELIX 10 AB1 ASP A 510 LYS A 541 1 32 SHEET 1 AA1 3 GLU A 41 ASP A 44 0 SHEET 2 AA1 3 LYS A 66 ARG A 70 -1 O THR A 67 N ILE A 43 SHEET 3 AA1 3 ILE A 54 SER A 56 -1 N SER A 56 O CYS A 68 SHEET 1 AA2 8 ARG A 93 GLN A 95 0 SHEET 2 AA2 8 TRP A 85 ARG A 87 -1 N PHE A 86 O PHE A 94 SHEET 3 AA2 8 CYS A 78 VAL A 80 -1 N ARG A 79 O ARG A 87 SHEET 4 AA2 8 SER A 201 PRO A 206 -1 O VAL A 202 N VAL A 80 SHEET 5 AA2 8 LEU A 191 ILE A 196 -1 N ILE A 192 O ALA A 205 SHEET 6 AA2 8 ASN A 182 PHE A 188 -1 N ILE A 186 O VAL A 193 SHEET 7 AA2 8 VAL A 171 GLU A 177 -1 N ALA A 174 O VAL A 185 SHEET 8 AA2 8 PRO A 165 ILE A 168 -1 N TYR A 166 O ILE A 173 SHEET 1 AA3 6 ILE A 152 VAL A 154 0 SHEET 2 AA3 6 ASP A 140 ALA A 145 -1 N ASP A 143 O THR A 153 SHEET 3 AA3 6 VAL A 129 VAL A 137 -1 N LEU A 135 O ILE A 142 SHEET 4 AA3 6 TRP A 113 GLU A 120 -1 N LYS A 114 O GLU A 136 SHEET 5 AA3 6 GLY A 100 GLY A 107 -1 N TYR A 102 O ILE A 117 SHEET 6 AA3 6 ILE A 214 SER A 215 -1 O SER A 215 N GLN A 106 SHEET 1 AA4 8 ARG A 332 TYR A 333 0 SHEET 2 AA4 8 PHE A 324 ASP A 326 -1 N TYR A 325 O TYR A 333 SHEET 3 AA4 8 THR A 316 SER A 320 -1 N VAL A 318 O ASP A 326 SHEET 4 AA4 8 LEU A 434 ILE A 438 -1 O LEU A 434 N LEU A 319 SHEET 5 AA4 8 LEU A 424 PHE A 428 -1 N VAL A 425 O HIS A 437 SHEET 6 AA4 8 ILE A 414 ILE A 419 -1 N THR A 417 O VAL A 426 SHEET 7 AA4 8 THR A 405 GLN A 410 -1 N TYR A 408 O THR A 416 SHEET 8 AA4 8 TYR A 400 SER A 402 -1 N TYR A 400 O ILE A 407 SHEET 1 AA5 7 GLU A 394 ALA A 395 0 SHEET 2 AA5 7 GLN A 388 VAL A 391 -1 N VAL A 391 O GLU A 394 SHEET 3 AA5 7 THR A 378 ILE A 383 -1 N GLU A 381 O LEU A 390 SHEET 4 AA5 7 TYR A 365 LYS A 375 -1 N VAL A 371 O LEU A 382 SHEET 5 AA5 7 TRP A 353 VAL A 362 -1 N LYS A 356 O ARG A 372 SHEET 6 AA5 7 ILE A 342 ASP A 347 -1 N ILE A 342 O VAL A 357 SHEET 7 AA5 7 THR A 446 CYS A 447 -1 O CYS A 447 N ALA A 346 SSBOND 1 CYS A 21 CYS A 47 1555 1555 2.06 SSBOND 2 CYS A 35 CYS A 68 1555 1555 2.03 SSBOND 3 CYS A 42 CYS A 60 1555 1555 2.12 SSBOND 4 CYS A 50 CYS A 69 1555 1555 2.06 SSBOND 5 CYS A 72 CYS A 503 1555 1555 2.10 SSBOND 6 CYS A 78 CYS A 218 1555 1555 1.98 SSBOND 7 CYS A 249 CYS A 290 1555 1555 2.11 SSBOND 8 CYS A 261 CYS A 285 1555 1555 2.14 SSBOND 9 CYS A 272 CYS A 308 1555 1555 2.07 SSBOND 10 CYS A 317 CYS A 450 1555 1555 2.02 SSBOND 11 CYS A 339 CYS A 468 1555 1555 2.07 SSBOND 12 CYS A 348 CYS A 447 1555 1555 2.07 SSBOND 13 CYS A 477 CYS A 520 1555 1555 2.05 SSBOND 14 CYS A 489 CYS A 515 1555 1555 2.06 SSBOND 15 CYS A 506 CYS A 538 1555 1555 2.04 SSBOND 16 CYS A 528 CYS A 552 1555 1555 2.11 LINK ND2 ASN A 182 C1 NAG A 601 1555 1555 1.41 LINK ND2 ASN A 404 C1 NAG A 602 1555 1555 1.45 CRYST1 144.370 144.370 186.710 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006927 0.003999 0.000000 0.00000 SCALE2 0.000000 0.007998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005356 0.00000 CONECT 6 196 CONECT 111 346 CONECT 162 287 CONECT 196 6 CONECT 213 352 CONECT 287 162 CONECT 346 111 CONECT 352 213 CONECT 377 3598 CONECT 428 1486 CONECT 1217 4019 CONECT 1486 428 CONECT 1729 2061 CONECT 1821 2023 CONECT 1907 2202 CONECT 2023 1821 CONECT 2061 1729 CONECT 2202 1907 CONECT 2263 3327 CONECT 2445 3333 CONECT 2511 3309 CONECT 2963 4033 CONECT 3309 2511 CONECT 3327 2263 CONECT 3333 2445 CONECT 3395 3744 CONECT 3493 3697 CONECT 3598 377 CONECT 3619 3896 CONECT 3697 3493 CONECT 3744 3395 CONECT 3806 4008 CONECT 3896 3619 CONECT 4008 3806 CONECT 4019 1217 4020 4030 CONECT 4020 4019 4021 4027 CONECT 4021 4020 4022 4028 CONECT 4022 4021 4023 4029 CONECT 4023 4022 4024 4030 CONECT 4024 4023 4031 CONECT 4025 4026 4027 4032 CONECT 4026 4025 CONECT 4027 4020 4025 CONECT 4028 4021 CONECT 4029 4022 CONECT 4030 4019 4023 CONECT 4031 4024 CONECT 4032 4025 CONECT 4033 2963 4034 4044 CONECT 4034 4033 4035 4041 CONECT 4035 4034 4036 4042 CONECT 4036 4035 4037 4043 CONECT 4037 4036 4038 4044 CONECT 4038 4037 4045 CONECT 4039 4040 4041 4046 CONECT 4040 4039 CONECT 4041 4034 4039 CONECT 4042 4035 CONECT 4043 4036 CONECT 4044 4033 4037 CONECT 4045 4038 CONECT 4046 4039 MASTER 363 0 2 10 32 0 0 6 4045 1 62 42 END