HEADER VIRAL PROTEIN 16-MAR-26 24QI TITLE CRYSTAL STRUCTURE OF A TAILSPIKE DEPOLYMERASE (BELISARIUS_GP86) FROM TITLE 2 ACINETOBACTER PHAGE BELISARIUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAILSPIKE DEPOLYMERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER PHAGE BELISARIUS; SOURCE 3 ORGANISM_TAXID: 3684234; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEPOLYMERASE, ACINETOBACTER PHAGE SOLIDUS, VIRUSES, TAILSPIKE, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.O.MATYUTA,M.M.SHNEIDER,O.Y.TIMOSHINA,K.M.BOYKO REVDAT 1 25-MAR-26 24QI 0 JRNL AUTH M.M.SHNEIDER,O.Y.TIMOSHINA,I.O.MATYUTA,A.A.LUKIANOVA, JRNL AUTH 2 A.D.TOKMAKOVA,A.A.SHELENKOV,O.Y.MIKHAILOVA,A.A.KASIMOVA, JRNL AUTH 3 K.M.BOYKO,N.S.PROKHOROV,V.O.POPOV,Y.A.KNIREL,K.A.MIROSHNIKOV JRNL TITL NOVEL GENUS OF PHAGES INFECTING ACINETOBACTER BAUMANNII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 75166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3993 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5412 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 322 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4379 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 1.19000 REMARK 3 B12 (A**2) : -0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.791 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4540 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4085 ; 0.003 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6168 ; 1.924 ; 1.637 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9363 ; 1.361 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 582 ; 9.720 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 235 ;34.137 ;22.723 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 675 ;14.481 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.380 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 596 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5320 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1140 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2307 ; 6.338 ; 5.374 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2306 ; 6.337 ; 5.373 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2884 ; 8.797 ; 8.040 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2885 ; 8.797 ; 8.040 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2233 ; 6.426 ; 5.526 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2234 ; 6.425 ; 5.527 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3281 ; 8.777 ; 8.190 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 17634 ; 9.551 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 17616 ; 9.552 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 24QI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAR-26. REMARK 100 THE DEPOSITION ID IS D_1300071709. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS SIRIUS REMARK 200 BEAMLINE : MANACA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977180 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79321 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 49.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : 0.30500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 14.50 REMARK 200 R MERGE FOR SHELL (I) : 1.93600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS PH 5.5, 2.4M NACL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 50.48750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.14897 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 261.50833 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 50.48750 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.14897 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 261.50833 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 50.48750 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.14897 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 261.50833 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 50.48750 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 29.14897 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 261.50833 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 50.48750 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 29.14897 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 261.50833 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 50.48750 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 29.14897 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 261.50833 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.29794 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 523.01667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 58.29794 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 523.01667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 58.29794 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 523.01667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 58.29794 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 523.01667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 58.29794 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 523.01667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 58.29794 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 523.01667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -50.48750 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -87.44692 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 50.48750 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -87.44692 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 750 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 810 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 840 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 852 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 860 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 867 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 873 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 PRO A 5 REMARK 465 SER A 6 REMARK 465 THR A 7 REMARK 465 ASN A 8 REMARK 465 ASN A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 ILE A 12 REMARK 465 ASN A 13 REMARK 465 ASN A 14 REMARK 465 SER A 15 REMARK 465 LEU A 16 REMARK 465 GLN A 17 REMARK 465 ALA A 18 REMARK 465 LEU A 19 REMARK 465 VAL A 20 REMARK 465 ASN A 21 REMARK 465 ARG A 22 REMARK 465 ASP A 23 REMARK 465 GLU A 24 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 25 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 26 CG1 CG2 CD1 REMARK 470 ASN A 27 CG OD1 ND2 REMARK 470 ASN A 28 CG OD1 ND2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 ASP A 39 CG OD1 OD2 REMARK 470 GLN A 40 CG CD OE1 NE2 REMARK 470 ASP A 41 CG OD1 OD2 REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 LEU A 55 CG CD1 CD2 REMARK 470 MET A 56 CG SD CE REMARK 470 ASP A 58 CG OD1 OD2 REMARK 470 VAL A 63 CG1 CG2 REMARK 470 ASN A 69 CG OD1 ND2 REMARK 470 ASN A 70 CG OD1 ND2 REMARK 470 VAL A 72 CG1 CG2 REMARK 470 ASN A 75 CG OD1 ND2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 VAL A 106 CG1 CG2 REMARK 470 LYS A 109 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 348 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 575 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 26 23.06 -170.34 REMARK 500 ILE A 30 -65.98 -136.90 REMARK 500 LEU A 34 124.09 -20.06 REMARK 500 PRO A 35 -173.47 -67.55 REMARK 500 PRO A 36 -177.13 -43.84 REMARK 500 ASP A 41 -71.59 -49.19 REMARK 500 ASN A 52 45.64 88.28 REMARK 500 MET A 56 87.49 -58.36 REMARK 500 LEU A 57 175.51 -51.38 REMARK 500 ASN A 69 64.48 72.75 REMARK 500 ASN A 75 5.90 -60.67 REMARK 500 ALA A 84 60.54 -109.59 REMARK 500 LEU A 94 -177.39 -69.85 REMARK 500 LEU A 95 -15.05 63.31 REMARK 500 SER A 110 143.33 179.21 REMARK 500 ASN A 116 -13.71 84.73 REMARK 500 ASP A 120 161.10 151.77 REMARK 500 SER A 127 -35.31 100.84 REMARK 500 ILE A 135 -56.09 -147.65 REMARK 500 PRO A 148 40.33 -83.88 REMARK 500 ALA A 157 -140.05 63.77 REMARK 500 PHE A 158 -78.44 74.57 REMARK 500 ILE A 162 -51.41 -134.58 REMARK 500 ASP A 164 95.18 -55.56 REMARK 500 SER A 199 128.08 -30.73 REMARK 500 ARG A 207 -125.35 71.46 REMARK 500 ASN A 295 60.30 70.68 REMARK 500 ASP A 334 35.56 -149.54 REMARK 500 THR A 365 50.77 39.66 REMARK 500 ARG A 432 -57.98 -129.66 REMARK 500 ASP A 472 46.97 -82.80 REMARK 500 LEU A 485 78.90 -105.35 REMARK 500 LEU A 489 67.43 -100.07 REMARK 500 ASP A 533 55.95 -94.22 REMARK 500 SER A 568 10.53 -144.73 REMARK 500 SER A 591 12.66 -144.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 26 ASN A 27 130.67 REMARK 500 THR A 87 VAL A 88 148.71 REMARK 500 ALA A 96 ILE A 97 149.94 REMARK 500 GLY A 156 ALA A 157 127.51 REMARK 500 GLY A 552 ALA A 553 -144.49 REMARK 500 REMARK 500 REMARK: NULL DBREF 24QI A 1 599 PDB 24QI 24QI 1 599 SEQRES 1 A 599 GLY SER SER VAL PRO SER THR ASN ASN SER THR ILE ASN SEQRES 2 A 599 ASN SER LEU GLN ALA LEU VAL ASN ARG ASP GLU PHE ILE SEQRES 3 A 599 ASN ASN GLU ILE LYS ASN GLY LEU PRO PRO ILE PHE ASP SEQRES 4 A 599 GLN ASP PHE ALA THR LYS THR GLY GLY TYR PRO LEU ASN SEQRES 5 A 599 ALA ARG LEU MET LEU ASP ASN GLY ASP ILE VAL ARG SER SEQRES 6 A 599 THR VAL ALA ASN ASN ALA VAL ASN PRO ASN VAL ASP MET SEQRES 7 A 599 THR GLY TRP ARG PHE ALA ASP ASN THR VAL GLU SER ILE SEQRES 8 A 599 ALA ASP LEU LEU ALA ILE GLN ASN PRO LYS ASN GLY SER SEQRES 9 A 599 CYS VAL PHE VAL LYS SER TYR HIS ALA GLY ARG ASN PHE SEQRES 10 A 599 GLY GLY ASP ASN PHE GLU TYR ASN SER SER ARG ALA LEU SEQRES 11 A 599 GLU ASN ASP GLY ILE SER VAL PHE ASN GLY TRP VAL ARG SEQRES 12 A 599 ILE PHE SER VAL PRO TYR VAL THR PHE TYR HIS GLY GLY SEQRES 13 A 599 ALA PHE GLY ASP TYR ILE THR ASP ASP GLU LEU ALA ILE SEQRES 14 A 599 GLU ARG SER LEU LYS TYR ALA ARG ASP ASN GLY ARG GLN SEQRES 15 A 599 VAL PHE VAL VAL GLY ASN PHE ALA LYS SER LYS PRO PHE SEQRES 16 A 599 ILE LEU ARG SER ASN ASP TYR VAL VAL GLY SER ARG LEU SEQRES 17 A 599 ASN SER ARG ILE LYS LYS ILE THR ASN GLN THR SER GLY SEQRES 18 A 599 LEU PRO ASP ILE LEU ALA PRO GLU LYS THR ASP VAL TYR SEQRES 19 A 599 ASP VAL TYR ASP VAL ASP ALA LEU CYS ILE PHE LEU PRO SEQRES 20 A 599 TRP SER GLY TYR TYR ALA ASP ASN ILE VAL LEU ARG ASP SEQRES 21 A 599 ILE MET PHE VAL ARG GLY THR TYR GLY VAL ASP THR PRO SEQRES 22 A 599 SER SER TYR GLY LEU TYR ALA PRO ARG HIS SER SER CYS SEQRES 23 A 599 GLU THR LEU ASN LEU LYS PHE ASP ASN VAL LEU THR GLY SEQRES 24 A 599 PHE LEU ALA LYS ASN LEU PHE LEU ASN LYS HIS THR ASN SEQRES 25 A 599 PHE SER SER VAL GLY ALA LYS ASN THR SER GLY ASN VAL SEQRES 26 A 599 SER MET VAL GLY MET ASN ILE TYR ASP GLY GLU ASN VAL SEQRES 27 A 599 GLN THR GLY THR SER ASN THR PHE GLU ARG PHE LEU PHE SEQRES 28 A 599 VAL ASN TYR GLN GLN GLY TYR PHE ILE SER ASN LEU GLN SEQRES 29 A 599 THR SER GLU PHE THR CYS CYS TYR GLY GLU ALA ILE SER SEQRES 30 A 599 LYS SER ASN GLY PHE ASP ASP THR SER VAL PHE PHE VAL SEQRES 31 A 599 ASN ASN PRO TYR GLU LEU SER PHE ASN GLN CYS GLY LEU SEQRES 32 A 599 GLU SER SER TYR GLY THR PRO MET TYR ILE THR GLY THR SEQRES 33 A 599 ASN PRO ASN ILE ARG SER LYS VAL SER ILE THR GLY TRP SEQRES 34 A 599 GLN SER ARG TRP GLY ALA ASN GLY THR LEU THR ASP ARG SEQRES 35 A 599 GLY LEU ASN LEU LEU THR ILE ALA GLY SER VAL ASP VAL SEQRES 36 A 599 THR THR ASP SER ALA SER PHE VAL LYS GLY SER GLU GLY SEQRES 37 A 599 PHE ILE ASN ASP PHE ALA TYR ILE THR ASP GLY ALA ARG SEQRES 38 A 599 LEU ILE ASN LEU GLY SER GLN LEU GLY SER ALA ALA THR SEQRES 39 A 599 VAL VAL VAL THR GLY ALA LYS LEU PHE ASP LEU TYR LYS SEQRES 40 A 599 SER MET SER GLU GLY ASP GLY GLY LEU ILE LYS SER THR SEQRES 41 A 599 LYS ASP ILE GLY SER ASP LEU ASN ASN GLY VAL GLU ASP SEQRES 42 A 599 SER PRO GLY PHE VAL PHE LYS THR VAL MET SER ALA THR SEQRES 43 A 599 LEU ASN ILE PRO SER GLY ALA SER ASP ILE TRP GLY THR SEQRES 44 A 599 SER GLU TYR TYR GLY LEU ASN SER SER GLN GLY THR GLN SEQRES 45 A 599 VAL LEU ARG ALA THR ASN LEU GLN LYS SER TYR VAL ARG SEQRES 46 A 599 TYR ARG THR GLY ALA SER THR PHE SER ALA TRP VAL GLU SEQRES 47 A 599 THR HET GOL A 601 6 HET GOL A 602 6 HET PGE A 603 10 HET PGE A 604 10 HETNAM GOL GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 PGE 2(C6 H14 O4) FORMUL 6 HOH *173(H2 O) HELIX 1 AA1 ASP A 39 GLY A 47 1 9 HELIX 2 AA2 PHE A 152 GLY A 156 5 5 HELIX 3 AA3 ASP A 165 GLY A 180 1 16 HELIX 4 AA4 TYR A 506 SER A 508 5 3 HELIX 5 AA5 GLY A 512 LEU A 516 5 5 HELIX 6 AA6 ASP A 526 VAL A 531 5 6 SHEET 1 AA1 2 VAL A 63 SER A 65 0 SHEET 2 AA1 2 TRP A 81 PHE A 83 -1 O ARG A 82 N ARG A 64 SHEET 1 AA2 5 THR A 87 VAL A 88 0 SHEET 2 AA2 5 CYS A 105 SER A 110 1 O LYS A 109 N VAL A 88 SHEET 3 AA2 5 GLY A 118 TYR A 124 -1 O ASP A 120 N VAL A 108 SHEET 4 AA2 5 TRP A 141 ILE A 144 -1 O ILE A 144 N ASN A 121 SHEET 5 AA2 5 VAL A 137 PHE A 138 -1 N PHE A 138 O TRP A 141 SHEET 1 AA312 ASP A 160 ASP A 164 0 SHEET 2 AA312 ASN A 188 LYS A 191 1 O ASN A 188 N TYR A 161 SHEET 3 AA312 TYR A 202 LYS A 214 1 O LYS A 213 N PHE A 189 SHEET 4 AA312 VAL A 257 ARG A 265 1 O VAL A 264 N LYS A 214 SHEET 5 AA312 GLU A 287 ASP A 294 1 O LEU A 289 N ASP A 260 SHEET 6 AA312 LYS A 309 VAL A 316 1 O THR A 311 N THR A 288 SHEET 7 AA312 LEU A 350 TYR A 354 1 O VAL A 352 N SER A 315 SHEET 8 AA312 TYR A 372 ILE A 376 1 O GLU A 374 N PHE A 351 SHEET 9 AA312 GLY A 402 GLU A 404 1 O GLU A 404 N GLY A 373 SHEET 10 AA312 GLN A 430 SER A 431 1 O GLN A 430 N LEU A 403 SHEET 11 AA312 SER A 461 PHE A 462 1 O SER A 461 N SER A 431 SHEET 12 AA312 GLN A 488 LEU A 489 1 O GLN A 488 N PHE A 462 SHEET 1 AA412 VAL A 183 PHE A 184 0 SHEET 2 AA412 TYR A 202 LYS A 214 1 O TYR A 202 N VAL A 183 SHEET 3 AA412 VAL A 257 ARG A 265 1 O VAL A 264 N LYS A 214 SHEET 4 AA412 GLU A 287 ASP A 294 1 O LEU A 289 N ASP A 260 SHEET 5 AA412 LYS A 309 VAL A 316 1 O THR A 311 N THR A 288 SHEET 6 AA412 THR A 345 GLU A 347 1 O GLU A 347 N ASN A 312 SHEET 7 AA412 GLU A 367 THR A 369 1 O GLU A 367 N PHE A 346 SHEET 8 AA412 TYR A 394 ASN A 399 1 O SER A 397 N PHE A 368 SHEET 9 AA412 SER A 422 THR A 427 1 O SER A 425 N PHE A 398 SHEET 10 AA412 VAL A 453 ASP A 458 1 O THR A 456 N ILE A 426 SHEET 11 AA412 ARG A 481 LEU A 485 1 O ARG A 481 N VAL A 455 SHEET 12 AA412 LYS A 501 ASP A 504 1 O PHE A 503 N LEU A 482 SHEET 1 AA511 PHE A 195 ARG A 198 0 SHEET 2 AA511 ALA A 241 LEU A 246 1 O ILE A 244 N LEU A 197 SHEET 3 AA511 SER A 274 TYR A 279 1 O TYR A 279 N CYS A 243 SHEET 4 AA511 VAL A 296 ALA A 302 1 O GLY A 299 N LEU A 278 SHEET 5 AA511 VAL A 328 ILE A 332 1 O ASN A 331 N PHE A 300 SHEET 6 AA511 GLN A 356 SER A 361 1 O PHE A 359 N MET A 330 SHEET 7 AA511 SER A 386 ASN A 391 1 O PHE A 389 N TYR A 358 SHEET 8 AA511 THR A 409 GLY A 415 1 O TYR A 412 N VAL A 390 SHEET 9 AA511 ASN A 445 GLY A 451 1 O THR A 448 N ILE A 413 SHEET 10 AA511 ASN A 471 THR A 477 1 O TYR A 475 N ILE A 449 SHEET 11 AA511 VAL A 495 VAL A 496 1 O VAL A 495 N ILE A 476 SHEET 1 AA6 2 ILE A 225 LEU A 226 0 SHEET 2 AA6 2 TYR A 234 ASP A 235 -1 O ASP A 235 N ILE A 225 SHEET 1 AA7 3 ALA A 253 ASP A 254 0 SHEET 2 AA7 3 ARG A 282 SER A 284 1 O ARG A 282 N ALA A 253 SHEET 3 AA7 3 ASN A 304 PHE A 306 1 O PHE A 306 N HIS A 283 SHEET 1 AA8 2 LYS A 319 ASN A 320 0 SHEET 2 AA8 2 GLY A 323 ASN A 324 -1 O GLY A 323 N ASN A 320 SHEET 1 AA9 2 SER A 406 TYR A 407 0 SHEET 2 AA9 2 ALA A 435 ASN A 436 1 O ASN A 436 N SER A 406 SHEET 1 AB1 5 GLY A 536 ALA A 545 0 SHEET 2 AB1 5 ILE A 556 ASN A 566 -1 O TYR A 562 N VAL A 538 SHEET 3 AB1 5 GLN A 569 ALA A 576 -1 O THR A 571 N TYR A 563 SHEET 4 AB1 5 LYS A 581 ARG A 587 -1 O LYS A 581 N ALA A 576 SHEET 5 AB1 5 VAL A 597 GLU A 598 -1 O VAL A 597 N VAL A 584 CRYST1 100.975 100.975 784.525 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009903 0.005718 0.000000 0.00000 SCALE2 0.000000 0.011436 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001275 0.00000 CONECT 4411 4412 4413 CONECT 4412 4411 CONECT 4413 4411 4414 4415 CONECT 4414 4413 CONECT 4415 4413 4416 CONECT 4416 4415 CONECT 4417 4418 4419 CONECT 4418 4417 CONECT 4419 4417 4420 4421 CONECT 4420 4419 CONECT 4421 4419 4422 CONECT 4422 4421 CONECT 4423 4424 4425 CONECT 4424 4423 CONECT 4425 4423 4426 CONECT 4426 4425 4427 CONECT 4427 4426 4428 CONECT 4428 4427 4432 CONECT 4429 4430 CONECT 4430 4429 4431 CONECT 4431 4430 4432 CONECT 4432 4428 4431 CONECT 4433 4434 4435 CONECT 4434 4433 CONECT 4435 4433 4436 CONECT 4436 4435 4437 CONECT 4437 4436 4438 CONECT 4438 4437 4442 CONECT 4439 4440 CONECT 4440 4439 4441 CONECT 4441 4440 4442 CONECT 4442 4438 4441 MASTER 462 0 4 6 56 0 0 6 4584 1 32 47 END