HEADER VIRAL PROTEIN 16-MAR-26 24QJ TITLE CRYSTAL STRUCTURE OF A TAILSPIKE DEPOLYMERASE (SOLIDUS_GP83) FROM TITLE 2 ACINETOBACTER PHAGE SOLIDUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAILSPIKE DEPOLYMERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER PHAGE SOLIDUS; SOURCE 3 ORGANISM_TAXID: 3471596; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEPOLYMERASE, ACINETOBACTER PHAGE SOLIDUS, VIRUSES, TAILSPIKE, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.O.MATYUTA,M.M.SHNEIDER,O.Y.TIMOSHINA,K.M.BOYKO REVDAT 1 25-MAR-26 24QJ 0 JRNL AUTH M.M.SHNEIDER,O.Y.TIMOSHINA,I.O.MATYUTA,A.A.LUKIANOVA, JRNL AUTH 2 A.D.TOKMAKOVA,A.A.SHELENKOV,O.Y.MIKHAILOVA,A.A.KASIMOVA, JRNL AUTH 3 K.M.BOYKO,N.S.PROKHOROV,V.O.POPOV,Y.A.KNIREL,K.A.MIROSHNIKOV JRNL TITL NOVEL GENUS OF PHAGES INFECTING ACINETOBACTER BAUMANNII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 24496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1325 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1680 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3592 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 17.84000 REMARK 3 B22 (A**2) : 17.84000 REMARK 3 B33 (A**2) : -35.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.284 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3702 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3363 ; 0.004 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5044 ; 2.207 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7737 ; 1.419 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 474 ; 9.395 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;36.078 ;23.523 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 543 ;18.949 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.671 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 499 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4303 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 859 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1899 ; 5.239 ; 4.261 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1898 ; 5.234 ; 4.260 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2372 ; 6.791 ; 6.397 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2373 ; 6.791 ; 6.397 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1803 ; 6.251 ; 4.601 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1804 ; 6.250 ; 4.603 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2673 ; 8.000 ; 6.765 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3885 ; 9.386 ;49.741 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3886 ; 9.386 ;49.750 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 24QJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAR-26. REMARK 100 THE DEPOSITION ID IS D_1300071700. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87313 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25822 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 44.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.21500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 1.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M K-NA-TARTRATE, 0.1M TRIS PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 42.11200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 24.31337 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 176.46467 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 42.11200 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 24.31337 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 176.46467 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 42.11200 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 24.31337 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 176.46467 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 42.11200 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 24.31337 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 176.46467 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 42.11200 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 24.31337 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 176.46467 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 42.11200 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 24.31337 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 176.46467 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 48.62675 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 352.92933 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 48.62675 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 352.92933 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 48.62675 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 352.92933 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 48.62675 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 352.92933 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 48.62675 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 352.92933 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 48.62675 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 352.92933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 55730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -203.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 219 REMARK 465 SER A 220 REMARK 465 ALA A 221 REMARK 465 ASP A 222 REMARK 465 LYS A 223 REMARK 465 ILE A 224 REMARK 465 GLY A 225 REMARK 465 GLY A 226 REMARK 465 THR A 702 REMARK 465 ALA A 703 REMARK 465 ALA A 704 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 271 CD OE1 OE2 REMARK 470 ASP A 366 CG OD1 OD2 REMARK 470 LYS A 419 CE NZ REMARK 470 ASN A 429 CG OD1 ND2 REMARK 470 SER A 455 OG REMARK 470 LYS A 572 CD CE NZ REMARK 470 GLU A 592 CG CD OE1 OE2 REMARK 470 GLU A 595 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 488 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 650 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 650 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 254 -73.23 -85.38 REMARK 500 ASP A 281 3.59 -65.36 REMARK 500 LEU A 339 -127.46 43.94 REMARK 500 GLU A 361 60.01 -67.96 REMARK 500 LYS A 503 -50.00 -123.42 REMARK 500 ASP A 540 140.75 58.96 REMARK 500 ARG A 541 172.28 -42.01 REMARK 500 SER A 560 34.39 -141.54 REMARK 500 VAL A 584 -69.70 -122.59 REMARK 500 SER A 593 0.15 -67.75 REMARK 500 LEU A 597 -69.19 -96.70 REMARK 500 SER A 618 139.86 -39.84 REMARK 500 ASN A 643 119.81 -38.70 REMARK 500 LYS A 681 -6.31 68.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 420 GLN A 421 148.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 24QJ A 219 704 PDB 24QJ 24QJ 219 704 SEQRES 1 A 486 GLY SER ALA ASP LYS ILE GLY GLY TYR PRO LEU ASN ALA SEQRES 2 A 486 ARG LEU MET LEU SER ASN GLY ASP ILE VAL LYS ASN THR SEQRES 3 A 486 THR PRO ASN ASN THR THR ASP PRO ASN VAL ASP MET THR SEQRES 4 A 486 GLY TRP VAL ASN ASP ASN SER ALA SER GLN ILE LYS TYR SEQRES 5 A 486 GLU ASN GLY ILE ASP ALA GLN THR VAL LYS ASP ARG ILE SEQRES 6 A 486 VAL TYR ILE GLN ASP PHE GLY GLY SER SER THR ASP PHE SEQRES 7 A 486 ASP PRO SER VAL ALA GLU VAL GLU ALA LYS ALA VAL ALA SEQRES 8 A 486 ASN PRO ASN SER LYS PRO TYR ASP GLY ALA ARG GLN PHE SEQRES 9 A 486 ALA PHE PRO MET LYS THR LEU LYS VAL TRP ASN TYR CYS SEQRES 10 A 486 ASP GLY TYR LEU ASP ARG GLY ALA VAL ALA SER ILE ARG SEQRES 11 A 486 ASN VAL ASP SER PHE SER SER ASN GLU PRO ARG THR GLU SEQRES 12 A 486 VAL LEU GLY VAL ASP SER SER ALA GLN LEU ALA ASN TYR SEQRES 13 A 486 THR ASP ARG ASP VAL VAL GLY LEU TYR VAL GLN SER ASP SEQRES 14 A 486 GLY GLN PRO ALA LEU LEU THR SER THR ASN THR THR TYR SEQRES 15 A 486 THR ALA THR THR VAL THR CYS PRO ASP ILE GLU SER LYS SEQRES 16 A 486 ARG ASN PHE ILE ARG LYS ASN GLN ILE ILE ASP VAL ILE SEQRES 17 A 486 ASP GLY ASN VAL LYS TYR SER SER ARG ILE GLN GLY VAL SEQRES 18 A 486 ASP GLY ASN THR VAL THR VAL ASP GLY TRP TYR ILE HIS SEQRES 19 A 486 GLY THR SER ASN THR GLY THR PRO PRO ASP GLY SER GLN SEQRES 20 A 486 ALA LYS PHE VAL PRO ASN THR LYS VAL TRP ALA THR ASN SEQRES 21 A 486 PHE ASN VAL ILE LEU LYS PRO GLU SER ASP ALA GLU SER SEQRES 22 A 486 MET VAL GLY ILE GLU LEU GLY THR PHE ASN ASN LYS TYR SEQRES 23 A 486 PRO ASN GLY ALA GLY TYR GLY TYR ASP ILE TRP SER GLY SEQRES 24 A 486 GLY LYS TYR THR ILE GLY ALA ALA PHE GLN ALA ARG GLY SEQRES 25 A 486 GLN TYR LYS THR GLY LEU TYR LEU TYR ASP ARG CYS ASP SEQRES 26 A 486 THR GLY THR ILE VAL SER ASN PRO ASN VAL GLY HIS LEU SEQRES 27 A 486 ILE VAL GLY SER GLY ALA PRO ASP THR TYR GLY VAL LEU SEQRES 28 A 486 SER HIS LYS LEU ALA THR SER PHE LEU SER ARG GLY ALA SEQRES 29 A 486 THR VAL TYR GLY TYR ALA GLN VAL THR GLU SER GLY GLU SEQRES 30 A 486 PHE LEU THR GLY THR ASN SER ASP GLY ALA TRP ALA ASN SEQRES 31 A 486 LEU LYS HIS SER TYR ARG VAL ILE SER SER GLY GLN THR SEQRES 32 A 486 ILE GLY ASP ASN THR VAL ALA ILE THR ASN PRO THR ALA SEQRES 33 A 486 PRO GLY GLN ASP ILE PHE LEU PRO ASN ALA THR THR SER SEQRES 34 A 486 ALA CYS ARG THR ILE HIS VAL LYS ASN ILE SER PRO THR SEQRES 35 A 486 TYR ASP VAL TYR LEU GLY GLY ALA VAL GLU GLY GLY GLY SEQRES 36 A 486 GLY SER VAL LEU ILE LYS PRO LYS GLU CYS VAL GLN LEU SEQRES 37 A 486 PHE CYS ASP GLY TYR THR TRP PHE ILE LEU SER HIS TYR SEQRES 38 A 486 LYS PRO THR ALA ALA HET PG4 A 801 13 HET 1PE A 802 16 HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 2 PG4 C8 H18 O5 FORMUL 3 1PE C10 H22 O6 FORMUL 4 HOH *21(H2 O) HELIX 1 AA1 SER A 264 ILE A 268 5 5 HELIX 2 AA2 ASP A 275 ASP A 281 1 7 HELIX 3 AA3 GLN A 287 GLY A 290 5 4 HELIX 4 AA4 PRO A 298 ASN A 310 1 13 HELIX 5 AA5 PRO A 311 SER A 313 5 3 HELIX 6 AA6 TYR A 338 ARG A 341 5 4 HELIX 7 AA7 SER A 368 ASN A 373 5 6 HELIX 8 AA8 ASP A 409 ARG A 414 1 6 HELIX 9 AA9 ASN A 415 ILE A 417 5 3 HELIX 10 AB1 ASN A 643 SER A 647 5 5 SHEET 1 AA1 3 ARG A 232 MET A 234 0 SHEET 2 AA1 3 ILE A 240 ASN A 243 -1 O VAL A 241 N LEU A 233 SHEET 3 AA1 3 TRP A 259 ASN A 261 -1 O VAL A 260 N LYS A 242 SHEET 1 AA2 3 VAL A 284 TYR A 285 0 SHEET 2 AA2 3 TYR A 316 ASP A 317 1 O ASP A 317 N VAL A 284 SHEET 3 AA2 3 PHE A 322 ALA A 323 -1 O ALA A 323 N TYR A 316 SHEET 1 AA3 2 ALA A 343 ARG A 348 0 SHEET 2 AA3 2 VAL A 380 GLN A 385 1 O GLN A 385 N ILE A 347 SHEET 1 AA4 7 LEU A 393 SER A 395 0 SHEET 2 AA4 7 GLN A 465 PHE A 468 -1 O ALA A 466 N SER A 395 SHEET 3 AA4 7 ILE A 422 ILE A 426 -1 N ASP A 424 O LYS A 467 SHEET 4 AA4 7 LYS A 431 ASP A 440 -1 O TYR A 432 N VAL A 425 SHEET 5 AA4 7 THR A 443 VAL A 446 -1 O THR A 445 N GLY A 438 SHEET 6 AA4 7 THR A 404 THR A 406 -1 N VAL A 405 O VAL A 444 SHEET 7 AA4 7 THR A 399 TYR A 400 -1 N THR A 399 O THR A 406 SHEET 1 AA5 5 LEU A 393 SER A 395 0 SHEET 2 AA5 5 GLN A 465 PHE A 468 -1 O ALA A 466 N SER A 395 SHEET 3 AA5 5 ILE A 422 ILE A 426 -1 N ASP A 424 O LYS A 467 SHEET 4 AA5 5 LYS A 431 ASP A 440 -1 O TYR A 432 N VAL A 425 SHEET 5 AA5 5 TYR A 450 ILE A 451 -1 O TYR A 450 N SER A 433 SHEET 1 AA6 3 TYR A 585 VAL A 590 0 SHEET 2 AA6 3 PHE A 596 ASN A 601 -1 O THR A 598 N GLN A 589 SHEET 3 AA6 3 TRP A 606 ALA A 607 -1 O ALA A 607 N GLY A 599 SHEET 1 AA7 5 TYR A 613 VAL A 615 0 SHEET 2 AA7 5 VAL A 627 THR A 630 1 O ILE A 629 N ARG A 614 SHEET 3 AA7 5 THR A 651 ASN A 656 1 O HIS A 653 N ALA A 628 SHEET 4 AA7 5 CYS A 683 CYS A 688 -1 O LEU A 686 N ILE A 652 SHEET 5 AA7 5 TRP A 693 TYR A 699 -1 O SER A 697 N GLN A 685 SHEET 1 AA8 3 ASP A 638 PHE A 640 0 SHEET 2 AA8 3 VAL A 663 GLY A 666 1 O TYR A 664 N ILE A 639 SHEET 3 AA8 3 LEU A 677 ILE A 678 -1 O ILE A 678 N VAL A 663 CRYST1 84.224 84.224 529.394 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011873 0.006855 0.000000 0.00000 SCALE2 0.000000 0.013710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001889 0.00000 CONECT 3594 3595 CONECT 3595 3594 3596 CONECT 3596 3595 3597 CONECT 3597 3596 3598 CONECT 3598 3597 3599 CONECT 3599 3598 3600 CONECT 3600 3599 3601 CONECT 3601 3600 3602 CONECT 3602 3601 3603 CONECT 3603 3602 3604 CONECT 3604 3603 3605 CONECT 3605 3604 3606 CONECT 3606 3605 CONECT 3607 3608 CONECT 3608 3607 3609 CONECT 3609 3608 3610 CONECT 3610 3609 3612 CONECT 3611 3612 3613 CONECT 3612 3610 3611 CONECT 3613 3611 3615 CONECT 3614 3615 3616 CONECT 3615 3613 3614 CONECT 3616 3614 3618 CONECT 3617 3618 3619 CONECT 3618 3616 3617 CONECT 3619 3617 3621 CONECT 3620 3621 3622 CONECT 3621 3619 3620 CONECT 3622 3620 MASTER 397 0 2 10 31 0 0 6 3642 1 29 38 END