HEADER OXIDOREDUCTASE 23-MAR-26 24XH TITLE CRYSTAL STRUCTURE OF THE DIAMINOPIMELATE DEHYDROGENASE FROM PYROCOCCUS TITLE 2 SP. IN ITS APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIAMINOPIMELATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS SP.; SOURCE 3 ORGANISM_TAXID: 33866; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS APOFORM, OXIDOREDUCTASE, D-AMINO ACID DEHYDROGENASE, NADH, NADPH EXPDTA X-RAY DIFFRACTION AUTHOR I.O.MATYUTA,E.Y.BEZSUDNOVA,V.O.POPOV,K.M.BOYKO REVDAT 1 24-JUN-26 24XH 0 JRNL AUTH J.V.RUDINA,I.O.MATYUTA,A.K.BAKUNOVA,K.M.BOYKO,V.O.POPOV, JRNL AUTH 2 E.Y.BEZSUDNOV JRNL TITL D-AMINO ACID DEHYDROGENASE FROM ARCHAEON PYROCOCCUS SP. JRNL TITL 2 STEREOSELECTIVELY AMINATES ALPHA-KETO ACIDS USING NADH OR JRNL TITL 3 NADPH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 7216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 380 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 504 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.4580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2284 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.98000 REMARK 3 B22 (A**2) : 2.98000 REMARK 3 B33 (A**2) : -5.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.433 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.109 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.886 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.790 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2342 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2214 ; 0.008 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3189 ; 1.907 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5095 ; 1.553 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 7.514 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;36.026 ;22.967 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 378 ;22.088 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;23.899 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 329 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2618 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 472 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1226 ; 5.414 ; 4.750 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1225 ; 5.416 ; 4.752 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1529 ; 8.324 ; 7.121 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1530 ; 8.321 ; 7.119 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1116 ; 5.239 ; 4.886 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1114 ; 5.233 ; 4.887 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1661 ; 8.052 ; 7.244 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9682 ;12.784 ;89.853 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9683 ;12.784 ;89.850 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 24XH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAR-26. REMARK 100 THE DEPOSITION ID IS D_1300071516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7780 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 23.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.26600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM CHLORIDE, 0.05M HEPES REMARK 280 PH 7.5, 35% V/V POLYETHYLENE GLYCOL 400, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 60.97950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.20653 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.30700 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 60.97950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 35.20653 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.30700 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 60.97950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 35.20653 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.30700 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 60.97950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 35.20653 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.30700 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 60.97950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 35.20653 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.30700 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 60.97950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 35.20653 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.30700 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.41306 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 88.61400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 70.41306 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 88.61400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 70.41306 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 88.61400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 70.41306 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 88.61400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 70.41306 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 88.61400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 70.41306 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 88.61400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 67940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -60.97950 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -105.61959 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 60.97950 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -105.61959 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 60.97950 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -35.20653 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -44.30700 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 -140.82612 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -44.30700 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 -60.97950 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 -35.20653 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -44.30700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 199 REMARK 465 ALA A 200 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 LYS A 6 CD CE NZ REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 LYS A 30 CE NZ REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 40 CG CD OE1 NE2 REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 TYR A 50 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 GLU A 84 CG CD OE1 OE2 REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 MET A 161 CG SD CE REMARK 470 LYS A 168 CG CD CE NZ REMARK 470 PHE A 170 CD2 CE1 CE2 CZ REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 GLU A 172 CG CD OE1 OE2 REMARK 470 VAL A 173 CG1 CG2 REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 ASP A 201 CG OD1 OD2 REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 GLN A 211 CG CD OE1 NE2 REMARK 470 ASP A 212 CG OD1 OD2 REMARK 470 TYR A 214 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 215 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 216 CG1 CG2 REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 TYR A 228 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 LYS A 282 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 170 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 245 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 245 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 14 -93.60 41.32 REMARK 500 ASP A 28 27.49 -149.18 REMARK 500 VAL A 36 -155.01 -138.86 REMARK 500 ARG A 37 -71.77 -118.26 REMARK 500 TYR A 58 -151.48 -139.30 REMARK 500 ILE A 63 -58.91 -25.52 REMARK 500 VAL A 82 -63.53 -28.44 REMARK 500 GLU A 84 -72.77 -50.23 REMARK 500 TYR A 100 117.34 -37.35 REMARK 500 ASN A 121 46.69 29.14 REMARK 500 MET A 161 -42.54 -28.59 REMARK 500 LYS A 168 -83.29 -3.40 REMARK 500 ALA A 169 66.99 -150.15 REMARK 500 GLU A 171 -85.09 -178.40 REMARK 500 GLU A 172 51.66 -98.54 REMARK 500 ASN A 185 48.77 39.22 REMARK 500 ARG A 202 -71.62 57.32 REMARK 500 LYS A 203 65.45 -66.84 REMARK 500 THR A 204 -62.58 -168.88 REMARK 500 GLN A 211 34.57 -140.82 REMARK 500 SER A 213 -78.45 51.68 REMARK 500 TYR A 214 -19.78 -44.51 REMARK 500 PHE A 215 -131.23 -111.80 REMARK 500 VAL A 216 -59.54 85.54 REMARK 500 GLU A 237 30.50 -94.34 REMARK 500 PRO A 253 -158.05 -84.58 REMARK 500 LYS A 282 31.99 -154.28 REMARK 500 SER A 301 124.75 -171.49 REMARK 500 PRO A 302 127.54 -39.62 REMARK 500 PRO A 303 -39.81 -32.11 REMARK 500 REMARK 500 REMARK: NULL DBREF 24XH A 1 311 PDB 24XH 24XH 1 311 SEQRES 1 A 311 MET SER GLU LYS ILE LYS ILE GLY ILE ILE GLY PHE GLY SEQRES 2 A 311 ASN VAL GLY GLN TYR ALA TYR LEU GLY VAL GLU GLU GLN SEQRES 3 A 311 LYS ASP MET LYS VAL ARG GLY ILE PHE VAL ARG ASP VAL SEQRES 4 A 311 GLN LYS TYR LYS GLU LYS TYR ASN ALA LYS TYR PRO LYS SEQRES 5 A 311 ALA CYS GLU LEU MET TYR SER LEU THR GLU ILE PRO SER SEQRES 6 A 311 VAL LYS GLU GLU LEU ASP VAL CYS LEU LEU CYS ILE PRO SEQRES 7 A 311 SER ARG LEU VAL PRO GLU THR THR SER SER LEU LEU LYS SEQRES 8 A 311 LEU GLY MET ASN THR VAL ASP SER TYR ASP ILE HIS ASP SEQRES 9 A 311 LYS ILE TRP GLU TYR LYS GLU LYS ALA THR SER ILE ALA SEQRES 10 A 311 LYS GLU HIS ASN SER VAL ALA VAL ILE SER ALA GLY TRP SEQRES 11 A 311 ASP PRO GLY THR ASP SER ILE ILE ARG PHE LEU MET GLU SEQRES 12 A 311 LEU ILE ALA PRO ASN GLY ILE THR PHE THR ASN PHE GLY SEQRES 13 A 311 PRO GLY MET SER MET GLY HIS SER THR ALA LEU LYS ALA SEQRES 14 A 311 PHE GLU GLU VAL VAL ASP ALA VAL SER TYR THR ILE PRO SEQRES 15 A 311 LYS GLY ASN GLY LEU HIS MET ARG LEU VAL TYR VAL LEU SEQRES 16 A 311 PRO LYS GLU ASN ALA ASP ARG LYS THR LEU GLU GLN LYS SEQRES 17 A 311 ILE LYS GLN ASP SER TYR PHE VAL HIS ASP GLU THR ARG SEQRES 18 A 311 VAL LYS PHE VAL SER THR TYR LYS GLU LEU GLU ARG VAL SEQRES 19 A 311 LYS SER GLU GLY HIS GLY VAL LEU LEU GLU ARG TYR GLY SEQRES 20 A 311 LYS THR ILE GLY SER PRO ASN GLN VAL LEU LYS PHE ASP SEQRES 21 A 311 ILE LYS VAL ASN ASN PRO ALA THR THR ALA GLN VAL MET SEQRES 22 A 311 VAL SER SER ALA ARG ALA THR MET LYS LEU PRO PRO GLY SEQRES 23 A 311 ALA TYR THR LEU LEU GLU ILE PRO LEU ILE THR LEU VAL SEQRES 24 A 311 ASP SER PRO PRO GLU GLU ILE ILE LYS ARG LEU TYR HET EPE A 401 15 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 2 EPE C8 H18 N2 O4 S FORMUL 3 HOH *2(H2 O) HELIX 1 AA1 ASN A 14 GLU A 25 1 12 HELIX 2 AA2 ASP A 38 ASN A 47 1 10 HELIX 3 AA3 TYR A 50 LEU A 56 1 7 HELIX 4 AA4 THR A 61 LYS A 67 5 7 HELIX 5 AA5 LEU A 81 LEU A 92 1 12 HELIX 6 AA6 LYS A 105 HIS A 120 1 16 HELIX 7 AA7 GLY A 133 ALA A 146 1 14 HELIX 8 AA8 SER A 160 LEU A 167 1 8 HELIX 9 AA9 LYS A 168 PHE A 170 5 3 HELIX 10 AB1 LEU A 205 LYS A 210 1 6 HELIX 11 AB2 ASN A 265 MET A 281 1 17 HELIX 12 AB3 PRO A 294 VAL A 299 5 6 HELIX 13 AB4 PRO A 302 LEU A 310 1 9 SHEET 1 AA1 7 MET A 57 SER A 59 0 SHEET 2 AA1 7 MET A 29 VAL A 36 1 N ILE A 34 O TYR A 58 SHEET 3 AA1 7 ILE A 5 ILE A 10 1 N ILE A 7 O LYS A 30 SHEET 4 AA1 7 VAL A 72 LEU A 75 1 O LEU A 74 N ILE A 10 SHEET 5 AA1 7 ASN A 95 VAL A 97 1 O VAL A 97 N LEU A 75 SHEET 6 AA1 7 VAL A 123 VAL A 125 1 O VAL A 125 N THR A 96 SHEET 7 AA1 7 GLY A 286 TYR A 288 1 O TYR A 288 N ALA A 124 SHEET 1 AA2 3 ASN A 148 PHE A 155 0 SHEET 2 AA2 3 GLY A 238 THR A 249 -1 O GLU A 244 N PHE A 152 SHEET 3 AA2 3 SER A 252 ASN A 264 -1 O VAL A 263 N HIS A 239 SHEET 1 AA3 4 GLY A 158 MET A 159 0 SHEET 2 AA3 4 VAL A 173 GLY A 184 -1 O THR A 180 N GLY A 158 SHEET 3 AA3 4 LEU A 187 PRO A 196 -1 O LEU A 187 N GLY A 184 SHEET 4 AA3 4 GLU A 219 PHE A 224 1 O LYS A 223 N VAL A 194 CISPEP 1 ASP A 131 PRO A 132 0 10.93 CISPEP 2 GLY A 156 PRO A 157 0 -14.23 CRYST1 121.959 121.959 132.921 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008199 0.004734 0.000000 0.00000 SCALE2 0.000000 0.009468 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007523 0.00000 CONECT 2286 2287 2291 2295 CONECT 2287 2286 2288 CONECT 2288 2287 2289 CONECT 2289 2288 2290 2292 CONECT 2290 2289 2291 CONECT 2291 2286 2290 CONECT 2292 2289 2293 CONECT 2293 2292 2294 CONECT 2294 2293 CONECT 2295 2286 2296 CONECT 2296 2295 2297 CONECT 2297 2296 2298 2299 2300 CONECT 2298 2297 CONECT 2299 2297 CONECT 2300 2297 MASTER 431 0 1 13 14 0 0 6 2301 1 15 24 END