data_250D # _entry.id 250D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 250D pdb_0000250d 10.2210/pdb250d/pdb RCSB BDH071 ? ? WWPDB D_1000177651 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-04-19 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 250D _pdbx_database_status.recvd_initial_deposition_date 1996-02-22 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Urpi, L.' 1 'Tereshko, V.' 2 'Malinina, L.' 3 'Huynh-Dinh, T.' 4 'Subirana, J.A.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structural comparison between the d(CTAG) sequence in oligonucleotides and trp and met repressor-operator complexes.' Nat.Struct.Biol. 3 325 328 1996 NSBIEW US 1072-8368 2024 ? 8599757 10.1038/nsb0496-325 1 'Structure of the B-DNA Oligomers d(CGCTAGCG) and d(CGCTCTAGAGCG) in New Crystal Forms' Biochemistry 35 11589 11595 1996 BICHAW US 0006-2960 0033 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Urpi, L.' 1 ? primary 'Tereshko, V.' 2 ? primary 'Malinina, L.' 3 ? primary 'Huynh-Dinh, T.' 4 ? primary 'Subirana, J.A.' 5 ? 1 'Tereshko, R.V.' 6 ? 1 'Urpi, L.' 7 ? 1 'Malinina, L.' 8 ? 1 'Huynh-Dinh, T.' 9 ? 1 'Subirana, J.A.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*TP*AP*GP*CP*G)-3') ; 2427.605 6 ? ? ? ? 2 water nat water 18.015 34 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DT)(DA)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCTAGCG _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DT n 1 5 DA n 1 6 DG n 1 7 DC n 1 8 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DG 8 8 8 DG G A . n B 1 1 DC 1 9 9 DC C B . n B 1 2 DG 2 10 10 DG G B . n B 1 3 DC 3 11 11 DC C B . n B 1 4 DT 4 12 12 DT T B . n B 1 5 DA 5 13 13 DA A B . n B 1 6 DG 6 14 14 DG G B . n B 1 7 DC 7 15 15 DC C B . n B 1 8 DG 8 16 16 DG G B . n C 1 1 DC 1 17 17 DC C C . n C 1 2 DG 2 18 18 DG G C . n C 1 3 DC 3 19 19 DC C C . n C 1 4 DT 4 20 20 DT T C . n C 1 5 DA 5 21 21 DA A C . n C 1 6 DG 6 22 22 DG G C . n C 1 7 DC 7 23 23 DC C C . n C 1 8 DG 8 24 24 DG G C . n D 1 1 DC 1 25 25 DC C D . n D 1 2 DG 2 26 26 DG G D . n D 1 3 DC 3 27 27 DC C D . n D 1 4 DT 4 28 28 DT T D . n D 1 5 DA 5 29 29 DA A D . n D 1 6 DG 6 30 30 DG G D . n D 1 7 DC 7 31 31 DC C D . n D 1 8 DG 8 32 32 DG G D . n E 1 1 DC 1 33 33 DC C E . n E 1 2 DG 2 34 34 DG G E . n E 1 3 DC 3 35 35 DC C E . n E 1 4 DT 4 36 36 DT T E . n E 1 5 DA 5 37 37 DA A E . n E 1 6 DG 6 38 38 DG G E . n E 1 7 DC 7 39 39 DC C E . n E 1 8 DG 8 40 40 DG G E . n F 1 1 DC 1 41 41 DC C F . n F 1 2 DG 2 42 42 DG G F . n F 1 3 DC 3 43 43 DC C F . n F 1 4 DT 4 44 44 DT T F . n F 1 5 DA 5 45 45 DA A F . n F 1 6 DG 6 46 46 DG G F . n F 1 7 DC 7 47 47 DC C F . n F 1 8 DG 8 48 48 DG G F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 HOH 1 51 51 HOH HOH A . G 2 HOH 2 66 66 HOH HOH A . G 2 HOH 3 82 82 HOH HOH A . H 2 HOH 1 49 49 HOH HOH B . H 2 HOH 2 50 50 HOH HOH B . H 2 HOH 3 61 61 HOH HOH B . H 2 HOH 4 62 62 HOH HOH B . H 2 HOH 5 65 65 HOH HOH B . H 2 HOH 6 79 79 HOH HOH B . I 2 HOH 1 53 53 HOH HOH C . I 2 HOH 2 55 55 HOH HOH C . I 2 HOH 3 63 63 HOH HOH C . I 2 HOH 4 70 70 HOH HOH C . I 2 HOH 5 72 72 HOH HOH C . I 2 HOH 6 81 81 HOH HOH C . J 2 HOH 1 52 52 HOH HOH D . J 2 HOH 2 56 56 HOH HOH D . J 2 HOH 3 57 57 HOH HOH D . J 2 HOH 4 64 64 HOH HOH D . K 2 HOH 1 54 54 HOH HOH E . K 2 HOH 2 58 58 HOH HOH E . K 2 HOH 3 60 60 HOH HOH E . K 2 HOH 4 67 67 HOH HOH E . K 2 HOH 5 74 74 HOH HOH E . K 2 HOH 6 75 75 HOH HOH E . K 2 HOH 7 76 76 HOH HOH E . K 2 HOH 8 78 78 HOH HOH E . L 2 HOH 1 59 59 HOH HOH F . L 2 HOH 2 68 68 HOH HOH F . L 2 HOH 3 69 69 HOH HOH F . L 2 HOH 4 71 71 HOH HOH F . L 2 HOH 5 73 73 HOH HOH F . L 2 HOH 6 77 77 HOH HOH F . L 2 HOH 7 80 80 HOH HOH F . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement . ? 1 MARXDS 'data reduction' . ? 2 # _cell.entry_id 250D _cell.length_a 24.770 _cell.length_b 41.520 _cell.length_c 115.890 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 250D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 250D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_percent_sol 39.87 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.20 _exptl_crystal_grow.pdbx_details 'pH 6.20, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 SPERMINE_HCL ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1993-03-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 250D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.470 _reflns.number_obs 3742 _reflns.number_all ? _reflns.percent_possible_obs 80.600 _reflns.pdbx_Rmerge_I_obs 0.0880000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 250D _refine.ls_number_reflns_obs 3309 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.470 _refine.ls_percent_reflns_obs 75.200 _refine.ls_R_factor_obs 0.1820000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1820000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1086 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 102 _refine_hist.number_atoms_total 1188 _refine_hist.d_res_high 2.470 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.018 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.67 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 0.458360 -0.888360 -0.026880 0.888450 0.458790 -0.012690 0.023610 -0.018070 0.999560 -2.70130 4.88290 19.04740 2 given ? -0.546520 -0.837150 -0.022520 0.837340 -0.546680 0.001280 -0.013380 -0.018160 0.999750 -8.87490 5.21940 38.46590 # _database_PDB_matrix.entry_id 250D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 250D _struct.title 'STRUCTURAL COMPARISON BETWEEN THE D(CTAG) SEQUENCE IN OLIGONUCLEOTIDES AND TRP AND MET REPRESSOR-OPERATOR COMPLEXES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 250D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 250D _struct_ref.pdbx_db_accession 250D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 250D A 1 ? 8 ? 250D 1 ? 8 ? 1 8 2 1 250D B 1 ? 8 ? 250D 9 ? 16 ? 9 16 3 1 250D C 1 ? 8 ? 250D 17 ? 24 ? 17 24 4 1 250D D 1 ? 8 ? 250D 25 ? 32 ? 25 32 5 1 250D E 1 ? 8 ? 250D 33 ? 40 ? 33 40 6 1 250D F 1 ? 8 ? 250D 41 ? 48 ? 41 48 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,G,H 2 1 C,D,I,J 3 1 E,F,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id 1 2 3 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 1 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 1 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 1 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 2 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 2 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 2 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 3 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 3 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 3 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 4 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 4 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 5 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 5 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 6 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 6 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 6 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 7 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 7 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 7 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 8 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 8 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 8 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 8 N2 ? ? ? 1_555 C DG 2 N3 ? ? A DG 8 C DG 18 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog24 hydrog ? ? A DG 8 N3 ? ? ? 1_555 C DG 2 N2 ? ? A DG 8 C DG 18 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog25 hydrog ? ? B DG 2 N2 ? ? ? 1_555 D DG 8 N3 ? ? B DG 10 D DG 32 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog26 hydrog ? ? B DG 2 N3 ? ? ? 1_555 D DG 8 N2 ? ? B DG 10 D DG 32 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog27 hydrog ? ? C DC 1 N3 ? ? ? 1_555 D DG 8 N1 ? ? C DC 17 D DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DC 1 N4 ? ? ? 1_555 D DG 8 O6 ? ? C DC 17 D DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DC 1 O2 ? ? ? 1_555 D DG 8 N2 ? ? C DC 17 D DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 7 N3 ? ? C DG 18 D DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 7 O2 ? ? C DG 18 D DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 7 N4 ? ? C DG 18 D DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 3 N3 ? ? ? 1_555 D DG 6 N1 ? ? C DC 19 D DG 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DC 3 N4 ? ? ? 1_555 D DG 6 O6 ? ? C DC 19 D DG 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DC 3 O2 ? ? ? 1_555 D DG 6 N2 ? ? C DC 19 D DG 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 5 N1 ? ? C DT 20 D DA 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 5 N6 ? ? C DT 20 D DA 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DA 5 N1 ? ? ? 1_555 D DT 4 N3 ? ? C DA 21 D DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 4 O4 ? ? C DA 21 D DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 3 N3 ? ? C DG 22 D DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 3 O2 ? ? C DG 22 D DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DC 3 N4 ? ? C DG 22 D DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 23 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 23 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 23 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DG 8 N1 ? ? ? 1_555 D DC 1 N3 ? ? C DG 24 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DG 8 N2 ? ? ? 1_555 D DC 1 O2 ? ? C DG 24 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DG 8 O6 ? ? ? 1_555 D DC 1 N4 ? ? C DG 24 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DG 8 N2 ? ? ? 1_555 E DG 2 N3 ? ? C DG 24 E DG 34 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog50 hydrog ? ? C DG 8 N3 ? ? ? 1_555 E DG 2 N2 ? ? C DG 24 E DG 34 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog51 hydrog ? ? D DG 2 N2 ? ? ? 1_555 F DG 8 N3 ? ? D DG 26 F DG 48 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog52 hydrog ? ? D DG 2 N3 ? ? ? 1_555 F DG 8 N2 ? ? D DG 26 F DG 48 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog53 hydrog ? ? E DC 1 N3 ? ? ? 1_555 F DG 8 N1 ? ? E DC 33 F DG 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? E DC 1 N4 ? ? ? 1_555 F DG 8 O6 ? ? E DC 33 F DG 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? E DC 1 O2 ? ? ? 1_555 F DG 8 N2 ? ? E DC 33 F DG 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? E DG 2 N1 ? ? ? 1_555 F DC 7 N3 ? ? E DG 34 F DC 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E DG 2 N2 ? ? ? 1_555 F DC 7 O2 ? ? E DG 34 F DC 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? E DG 2 O6 ? ? ? 1_555 F DC 7 N4 ? ? E DG 34 F DC 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? E DC 3 N3 ? ? ? 1_555 F DG 6 N1 ? ? E DC 35 F DG 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E DC 3 N4 ? ? ? 1_555 F DG 6 O6 ? ? E DC 35 F DG 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? E DC 3 O2 ? ? ? 1_555 F DG 6 N2 ? ? E DC 35 F DG 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? E DT 4 N3 ? ? ? 1_555 F DA 5 N1 ? ? E DT 36 F DA 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? E DT 4 O4 ? ? ? 1_555 F DA 5 N6 ? ? E DT 36 F DA 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? E DA 5 N1 ? ? ? 1_555 F DT 4 N3 ? ? E DA 37 F DT 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? E DA 5 N6 ? ? ? 1_555 F DT 4 O4 ? ? E DA 37 F DT 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? E DG 6 N1 ? ? ? 1_555 F DC 3 N3 ? ? E DG 38 F DC 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? E DG 6 N2 ? ? ? 1_555 F DC 3 O2 ? ? E DG 38 F DC 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? E DG 6 O6 ? ? ? 1_555 F DC 3 N4 ? ? E DG 38 F DC 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? E DC 7 N3 ? ? ? 1_555 F DG 2 N1 ? ? E DC 39 F DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? E DC 7 N4 ? ? ? 1_555 F DG 2 O6 ? ? E DC 39 F DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? E DC 7 O2 ? ? ? 1_555 F DG 2 N2 ? ? E DC 39 F DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? E DG 8 N1 ? ? ? 1_555 F DC 1 N3 ? ? E DG 40 F DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? E DG 8 N2 ? ? ? 1_555 F DC 1 O2 ? ? E DG 40 F DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? E DG 8 O6 ? ? ? 1_555 F DC 1 N4 ? ? E DG 40 F DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O2 A DC 1 ? ? H21 B DG 16 ? ? 1.59 2 1 H42 E DC 33 ? ? O6 F DG 48 ? ? 1.59 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" B DT 12 ? ? P B DA 13 ? ? 1.534 1.607 -0.073 0.012 Y 2 1 "O3'" B DG 14 ? ? "C3'" B DG 14 ? ? 1.379 1.419 -0.040 0.006 N 3 1 C5 C DT 20 ? ? C7 C DT 20 ? ? 1.534 1.496 0.038 0.006 N 4 1 C8 C DG 22 ? ? N9 C DG 22 ? ? 1.331 1.374 -0.043 0.007 N 5 1 N1 D DC 25 ? ? C6 D DC 25 ? ? 1.328 1.367 -0.039 0.006 N 6 1 "C5'" E DC 33 ? ? "C4'" E DC 33 ? ? 1.561 1.512 0.049 0.007 N 7 1 "O3'" E DG 34 ? ? P E DC 35 ? ? 1.534 1.607 -0.073 0.012 Y 8 1 P E DC 35 ? ? "O5'" E DC 35 ? ? 1.528 1.593 -0.065 0.010 N 9 1 C5 F DT 44 ? ? C7 F DT 44 ? ? 1.534 1.496 0.038 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 124.50 118.90 5.60 0.60 N 2 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.67 121.90 -5.23 0.70 N 3 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.53 108.30 2.23 0.30 N 4 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DC 3 ? ? 131.11 119.70 11.41 1.20 Y 5 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.20 108.30 1.90 0.30 N 6 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.67 118.90 4.77 0.60 N 7 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.20 108.30 1.90 0.30 N 8 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.93 122.90 -4.97 0.60 N 9 1 N1 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 122.84 118.90 3.94 0.60 N 10 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.95 108.30 2.65 0.30 N 11 1 "C3'" B DC 9 ? ? "O3'" B DC 9 ? ? P B DG 10 ? ? 127.87 119.70 8.17 1.20 Y 12 1 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 115.03 108.30 6.73 0.30 N 13 1 C4 B DT 12 ? ? C5 B DT 12 ? ? C6 B DT 12 ? ? 122.40 118.00 4.40 0.60 N 14 1 C6 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 118.10 122.90 -4.80 0.60 N 15 1 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 101.49 108.00 -6.51 0.70 N 16 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? "C2'" B DG 14 ? ? 101.01 105.90 -4.89 0.80 N 17 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 116.16 108.30 7.86 0.30 N 18 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 114.04 108.30 5.74 0.30 N 19 1 "C5'" C DC 17 ? ? "C4'" C DC 17 ? ? "C3'" C DC 17 ? ? 129.25 115.70 13.55 1.20 N 20 1 N1 C DC 17 ? ? C2 C DC 17 ? ? O2 C DC 17 ? ? 123.40 118.90 4.50 0.60 N 21 1 N3 C DC 17 ? ? C2 C DC 17 ? ? O2 C DC 17 ? ? 117.13 121.90 -4.77 0.70 N 22 1 "C3'" C DC 17 ? ? "O3'" C DC 17 ? ? P C DG 18 ? ? 129.28 119.70 9.58 1.20 Y 23 1 "O5'" C DG 18 ? ? "C5'" C DG 18 ? ? "C4'" C DG 18 ? ? 104.01 109.40 -5.39 0.80 N 24 1 "O4'" C DG 18 ? ? "C1'" C DG 18 ? ? N9 C DG 18 ? ? 111.45 108.30 3.15 0.30 N 25 1 "C3'" C DG 18 ? ? "O3'" C DG 18 ? ? P C DC 19 ? ? 130.56 119.70 10.86 1.20 Y 26 1 "O5'" C DC 19 ? ? "C5'" C DC 19 ? ? "C4'" C DC 19 ? ? 103.13 109.40 -6.27 0.80 N 27 1 "O4'" C DC 19 ? ? "C1'" C DC 19 ? ? N1 C DC 19 ? ? 110.26 108.30 1.96 0.30 N 28 1 N1 C DC 19 ? ? C2 C DC 19 ? ? O2 C DC 19 ? ? 122.96 118.90 4.06 0.60 N 29 1 C6 C DT 20 ? ? C5 C DT 20 ? ? C7 C DT 20 ? ? 118.08 122.90 -4.82 0.60 N 30 1 "C3'" C DA 21 ? ? "O3'" C DA 21 ? ? P C DG 22 ? ? 127.11 119.70 7.41 1.20 Y 31 1 N1 C DC 23 ? ? C2 C DC 23 ? ? O2 C DC 23 ? ? 123.07 118.90 4.17 0.60 N 32 1 N3 C DC 23 ? ? C2 C DC 23 ? ? O2 C DC 23 ? ? 117.32 121.90 -4.58 0.70 N 33 1 "C3'" C DC 23 ? ? "O3'" C DC 23 ? ? P C DG 24 ? ? 130.32 119.70 10.62 1.20 Y 34 1 "O4'" C DG 24 ? ? "C1'" C DG 24 ? ? N9 C DG 24 ? ? 114.18 108.30 5.88 0.30 N 35 1 "C5'" D DC 25 ? ? "C4'" D DC 25 ? ? "O4'" D DC 25 ? ? 125.28 109.80 15.48 1.10 N 36 1 N1 D DC 25 ? ? C2 D DC 25 ? ? O2 D DC 25 ? ? 122.91 118.90 4.01 0.60 N 37 1 N3 D DC 25 ? ? C2 D DC 25 ? ? O2 D DC 25 ? ? 117.42 121.90 -4.48 0.70 N 38 1 "C3'" D DG 26 ? ? "O3'" D DG 26 ? ? P D DC 27 ? ? 128.81 119.70 9.11 1.20 Y 39 1 "O4'" D DT 28 ? ? "C1'" D DT 28 ? ? N1 D DT 28 ? ? 115.33 108.30 7.03 0.30 N 40 1 C6 D DT 28 ? ? C5 D DT 28 ? ? C7 D DT 28 ? ? 117.70 122.90 -5.20 0.60 N 41 1 "O4'" D DA 29 ? ? "C1'" D DA 29 ? ? N9 D DA 29 ? ? 101.53 108.00 -6.47 0.70 N 42 1 N1 D DA 29 ? ? C6 D DA 29 ? ? N6 D DA 29 ? ? 122.38 118.60 3.78 0.60 N 43 1 "O4'" D DG 30 ? ? "C1'" D DG 30 ? ? N9 D DG 30 ? ? 116.63 108.30 8.33 0.30 N 44 1 "O4'" D DC 31 ? ? "C1'" D DC 31 ? ? N1 D DC 31 ? ? 111.75 108.30 3.45 0.30 N 45 1 "O4'" D DG 32 ? ? "C1'" D DG 32 ? ? N9 D DG 32 ? ? 112.91 108.30 4.61 0.30 N 46 1 "O4'" E DC 33 ? ? "C1'" E DC 33 ? ? N1 E DC 33 ? ? 103.10 108.00 -4.90 0.70 N 47 1 N1 E DC 33 ? ? C2 E DC 33 ? ? O2 E DC 33 ? ? 123.44 118.90 4.54 0.60 N 48 1 "O3'" E DG 34 ? ? P E DC 35 ? ? "O5'" E DC 35 ? ? 115.59 104.00 11.59 1.90 Y 49 1 "O5'" E DC 35 ? ? "C5'" E DC 35 ? ? "C4'" E DC 35 ? ? 104.03 109.40 -5.37 0.80 N 50 1 "C5'" E DC 35 ? ? "C4'" E DC 35 ? ? "O4'" E DC 35 ? ? 116.44 109.80 6.64 1.10 N 51 1 "O4'" E DC 35 ? ? "C1'" E DC 35 ? ? N1 E DC 35 ? ? 110.67 108.30 2.37 0.30 N 52 1 "O4'" E DT 36 ? ? "C1'" E DT 36 ? ? N1 E DT 36 ? ? 110.98 108.30 2.68 0.30 N 53 1 C4 E DT 36 ? ? C5 E DT 36 ? ? C6 E DT 36 ? ? 121.77 118.00 3.77 0.60 N 54 1 C5 E DT 36 ? ? C6 E DT 36 ? ? N1 E DT 36 ? ? 119.96 123.70 -3.74 0.60 N 55 1 C6 E DT 36 ? ? C5 E DT 36 ? ? C7 E DT 36 ? ? 116.71 122.90 -6.19 0.60 N 56 1 "O4'" E DG 40 ? ? "C1'" E DG 40 ? ? N9 E DG 40 ? ? 112.97 108.30 4.67 0.30 N 57 1 N1 F DC 41 ? ? C2 F DC 41 ? ? O2 F DC 41 ? ? 123.64 118.90 4.74 0.60 N 58 1 "C3'" F DC 41 ? ? "O3'" F DC 41 ? ? P F DG 42 ? ? 127.24 119.70 7.54 1.20 Y 59 1 "O4'" F DT 44 ? ? "C1'" F DT 44 ? ? N1 F DT 44 ? ? 115.28 108.30 6.98 0.30 N 60 1 C6 F DT 44 ? ? C5 F DT 44 ? ? C7 F DT 44 ? ? 117.42 122.90 -5.48 0.60 N 61 1 "C3'" F DT 44 ? ? "O3'" F DT 44 ? ? P F DA 45 ? ? 127.51 119.70 7.81 1.20 Y 62 1 "O4'" F DA 45 ? ? "C1'" F DA 45 ? ? N9 F DA 45 ? ? 97.16 108.00 -10.84 0.70 N 63 1 N1 F DA 45 ? ? C6 F DA 45 ? ? N6 F DA 45 ? ? 122.42 118.60 3.82 0.60 N 64 1 "O4'" F DG 46 ? ? "C1'" F DG 46 ? ? N9 F DG 46 ? ? 115.07 108.30 6.77 0.30 N 65 1 "O5'" F DG 48 ? ? "C5'" F DG 48 ? ? "C4'" F DG 48 ? ? 103.62 109.40 -5.78 0.80 N 66 1 "O4'" F DG 48 ? ? "C1'" F DG 48 ? ? N9 F DG 48 ? ? 111.08 108.30 2.78 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG C 18 ? ? 0.060 'SIDE CHAIN' 2 1 DC D 25 ? ? 0.070 'SIDE CHAIN' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 250D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 8 1_555 -0.299 -0.349 -0.026 1.650 -2.967 -1.302 1 A_DC1:DG16_B A 1 ? B 16 ? 19 1 1 A DG 2 1_555 B DC 7 1_555 -0.316 -0.301 0.046 -12.719 -17.765 -3.294 2 A_DG2:DC15_B A 2 ? B 15 ? 19 1 1 A DC 3 1_555 B DG 6 1_555 -0.083 -0.116 0.395 -13.421 -10.061 0.133 3 A_DC3:DG14_B A 3 ? B 14 ? 19 1 1 A DT 4 1_555 B DA 5 1_555 -0.176 -0.253 -0.295 1.392 -10.755 0.974 4 A_DT4:DA13_B A 4 ? B 13 ? 20 1 1 A DA 5 1_555 B DT 4 1_555 0.060 -0.050 -0.125 0.550 -14.626 -3.161 5 A_DA5:DT12_B A 5 ? B 12 ? 20 1 1 A DG 6 1_555 B DC 3 1_555 -0.251 -0.042 0.090 7.169 -7.060 0.402 6 A_DG6:DC11_B A 6 ? B 11 ? 19 1 1 A DC 7 1_555 B DG 2 1_555 0.354 -0.245 -0.012 6.995 -16.986 -3.441 7 A_DC7:DG10_B A 7 ? B 10 ? 19 1 1 A DG 8 1_555 B DC 1 1_555 0.010 -0.324 0.452 7.689 -8.218 -5.418 8 A_DG8:DC9_B A 8 ? B 9 ? 19 1 1 C DC 1 1_555 D DG 8 1_555 -0.293 -0.349 0.063 4.080 -5.573 -1.219 9 C_DC17:DG32_D C 17 ? D 32 ? 19 1 1 C DG 2 1_555 D DC 7 1_555 -0.310 -0.337 0.101 -9.871 -18.342 -3.321 10 C_DG18:DC31_D C 18 ? D 31 ? 19 1 1 C DC 3 1_555 D DG 6 1_555 -0.095 -0.088 0.539 -14.068 -9.768 -0.569 11 C_DC19:DG30_D C 19 ? D 30 ? 19 1 1 C DT 4 1_555 D DA 5 1_555 -0.168 -0.282 -0.298 2.081 -8.262 0.733 12 C_DT20:DA29_D C 20 ? D 29 ? 20 1 1 C DA 5 1_555 D DT 4 1_555 0.087 -0.049 -0.123 -0.505 -14.193 -2.941 13 C_DA21:DT28_D C 21 ? D 28 ? 20 1 1 C DG 6 1_555 D DC 3 1_555 -0.257 -0.026 0.054 7.981 -7.745 0.756 14 C_DG22:DC27_D C 22 ? D 27 ? 19 1 1 C DC 7 1_555 D DG 2 1_555 0.349 -0.273 0.011 6.488 -16.968 -3.014 15 C_DC23:DG26_D C 23 ? D 26 ? 19 1 1 C DG 8 1_555 D DC 1 1_555 0.023 -0.320 0.409 8.998 -9.052 -5.803 16 C_DG24:DC25_D C 24 ? D 25 ? 19 1 1 E DC 1 1_555 F DG 8 1_555 -0.288 -0.352 -0.108 3.448 -3.489 -1.306 17 E_DC33:DG48_F E 33 ? F 48 ? 19 1 1 E DG 2 1_555 F DC 7 1_555 -0.360 -0.286 0.088 -11.355 -17.680 -3.774 18 E_DG34:DC47_F E 34 ? F 47 ? 19 1 1 E DC 3 1_555 F DG 6 1_555 -0.092 -0.115 0.409 -13.630 -9.922 -0.483 19 E_DC35:DG46_F E 35 ? F 46 ? 19 1 1 E DT 4 1_555 F DA 5 1_555 -0.160 -0.237 -0.333 1.389 -8.573 0.886 20 E_DT36:DA45_F E 36 ? F 45 ? 20 1 1 E DA 5 1_555 F DT 4 1_555 0.107 -0.059 -0.156 -0.837 -14.807 -2.985 21 E_DA37:DT44_F E 37 ? F 44 ? 20 1 1 E DG 6 1_555 F DC 3 1_555 -0.260 -0.039 -0.080 6.436 -7.604 1.251 22 E_DG38:DC43_F E 38 ? F 43 ? 19 1 1 E DC 7 1_555 F DG 2 1_555 0.350 -0.259 0.017 6.821 -16.640 -3.234 23 E_DC39:DG42_F E 39 ? F 42 ? 19 1 1 E DG 8 1_555 F DC 1 1_555 0.016 -0.319 0.378 8.443 -7.052 -5.619 24 E_DG40:DC41_F E 40 ? F 41 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 8 1_555 A DG 2 1_555 B DC 7 1_555 -0.127 0.288 3.808 -1.392 -0.727 38.487 0.541 -0.008 3.805 -1.102 2.111 38.518 1 AA_DC1DG2:DC15DG16_BB A 1 ? B 16 ? A 2 ? B 15 ? 1 A DG 2 1_555 B DC 7 1_555 A DC 3 1_555 B DG 6 1_555 0.605 0.218 3.491 0.182 -1.746 38.434 0.562 -0.894 3.480 -2.650 -0.277 38.473 2 AA_DG2DC3:DG14DC15_BB A 2 ? B 15 ? A 3 ? B 14 ? 1 A DC 3 1_555 B DG 6 1_555 A DT 4 1_555 B DA 5 1_555 -0.538 0.754 3.034 6.591 4.572 26.392 0.545 2.624 2.904 9.731 -14.029 27.563 3 AA_DC3DT4:DA13DG14_BB A 3 ? B 14 ? A 4 ? B 13 ? 1 A DT 4 1_555 B DA 5 1_555 A DA 5 1_555 B DT 4 1_555 -0.260 2.094 3.403 -1.416 -5.898 50.770 2.839 0.203 3.163 -6.850 1.645 51.108 4 AA_DT4DA5:DT12DA13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A DA 5 1_555 B DT 4 1_555 A DG 6 1_555 B DC 3 1_555 0.693 0.653 3.272 -2.276 2.731 25.594 0.700 -2.184 3.250 6.128 5.105 25.836 5 AA_DA5DG6:DC11DT12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A DG 6 1_555 B DC 3 1_555 A DC 7 1_555 B DG 2 1_555 -0.644 0.790 3.469 -0.177 -2.487 42.440 1.355 0.869 3.422 -3.431 0.244 42.510 6 AA_DG6DC7:DG10DC11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A DC 7 1_555 B DG 2 1_555 A DG 8 1_555 B DC 1 1_555 0.145 0.574 3.406 -2.735 1.812 35.633 0.662 -0.646 3.410 2.954 4.458 35.779 7 AA_DC7DG8:DC9DG10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 C DC 1 1_555 D DG 8 1_555 C DG 2 1_555 D DC 7 1_555 -0.109 0.303 3.799 -1.534 -1.255 38.534 0.638 -0.054 3.789 -1.901 2.322 38.583 8 CC_DC17DG18:DC31DG32_DD C 17 ? D 32 ? C 18 ? D 31 ? 1 C DG 2 1_555 D DC 7 1_555 C DC 3 1_555 D DG 6 1_555 0.742 0.170 3.581 -0.255 -0.567 37.320 0.347 -1.196 3.573 -0.886 0.399 37.325 9 CC_DG18DC19:DG30DC31_DD C 18 ? D 31 ? C 19 ? D 30 ? 1 C DC 3 1_555 D DG 6 1_555 C DT 4 1_555 D DA 5 1_555 -0.567 0.709 2.978 7.318 4.168 26.475 0.568 2.778 2.800 8.821 -15.487 27.760 10 CC_DC19DT20:DA29DG30_DD C 19 ? D 30 ? C 20 ? D 29 ? 1 C DT 4 1_555 D DA 5 1_555 C DA 5 1_555 D DT 4 1_555 -0.276 2.099 3.461 -1.283 -6.273 50.719 2.878 0.230 3.203 -7.290 1.491 51.095 11 CC_DT20DA21:DT28DA29_DD C 20 ? D 29 ? C 21 ? D 28 ? 1 C DA 5 1_555 D DT 4 1_555 C DG 6 1_555 D DC 3 1_555 0.650 0.655 3.217 -2.279 3.644 25.851 0.469 -2.044 3.209 8.074 5.050 26.200 12 CC_DA21DG22:DC27DT28_DD C 21 ? D 28 ? C 22 ? D 27 ? 1 C DG 6 1_555 D DC 3 1_555 C DC 7 1_555 D DG 2 1_555 -0.466 0.847 3.391 -1.042 -6.412 44.134 1.717 0.516 3.253 -8.479 1.377 44.585 13 CC_DG22DC23:DG26DC27_DD C 22 ? D 27 ? C 23 ? D 26 ? 1 C DC 7 1_555 D DG 2 1_555 C DG 8 1_555 D DC 1 1_555 0.112 0.596 3.290 -2.070 3.821 35.578 0.412 -0.483 3.323 6.224 3.372 35.834 14 CC_DC23DG24:DC25DG26_DD C 23 ? D 26 ? C 24 ? D 25 ? 1 E DC 1 1_555 F DG 8 1_555 E DG 2 1_555 F DC 7 1_555 -0.094 0.268 3.861 -2.700 -1.247 38.702 0.582 -0.247 3.848 -1.878 4.067 38.812 15 EE_DC33DG34:DC47DG48_FF E 33 ? F 48 ? E 34 ? F 47 ? 1 E DG 2 1_555 F DC 7 1_555 E DC 3 1_555 F DG 6 1_555 0.770 -0.023 3.430 -1.799 -0.308 37.886 0.006 -1.425 3.392 -0.474 2.769 37.928 16 EE_DG34DC35:DG46DC47_FF E 34 ? F 47 ? E 35 ? F 46 ? 1 E DC 3 1_555 F DG 6 1_555 E DT 4 1_555 F DA 5 1_555 -0.500 0.721 3.019 6.353 4.879 26.493 0.413 2.474 2.906 10.349 -13.475 27.657 17 EE_DC35DT36:DA45DG46_FF E 35 ? F 46 ? E 36 ? F 45 ? 1 E DT 4 1_555 F DA 5 1_555 E DA 5 1_555 F DT 4 1_555 -0.293 2.055 3.422 -0.988 -5.567 50.890 2.768 0.270 3.200 -6.455 1.145 51.183 18 EE_DT36DA37:DT44DA45_FF E 36 ? F 45 ? E 37 ? F 44 ? 1 E DA 5 1_555 F DT 4 1_555 E DG 6 1_555 F DC 3 1_555 0.642 0.706 3.237 -1.830 3.571 25.233 0.581 -1.971 3.250 8.110 4.155 25.545 19 EE_DA37DG38:DC43DT44_FF E 37 ? F 44 ? E 38 ? F 43 ? 1 E DG 6 1_555 F DC 3 1_555 E DC 7 1_555 F DG 2 1_555 -0.581 0.555 3.389 0.868 0.302 39.977 0.775 0.953 3.381 0.441 -1.270 39.987 20 EE_DG38DC39:DG42DC43_FF E 38 ? F 43 ? E 39 ? F 42 ? 1 E DC 7 1_555 F DG 2 1_555 E DG 8 1_555 F DC 1 1_555 0.154 0.566 3.348 -2.345 2.888 35.914 0.493 -0.589 3.365 4.668 3.791 36.100 21 EE_DC39DG40:DC41DG42_FF E 39 ? F 42 ? E 40 ? F 41 ? # _atom_sites.entry_id 250D _atom_sites.fract_transf_matrix[1][1] 0.040371 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024085 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008629 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_