data_258D # _entry.id 258D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 258D pdb_0000258d 10.2210/pdb258d/pdb RCSB DDF064 ? ? WWPDB D_1000177668 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 258D _pdbx_database_status.recvd_initial_deposition_date 1996-05-12 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Smith, C.K.' 1 'Brannigan, J.A.' 2 'Moore, M.H.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Factors affecting DNA sequence selectivity of nogalamycin intercalation: the crystal structure of d(TGTACA)2-nogalamycin2.' J.Mol.Biol. 263 237 258 1996 JMOBAK UK 0022-2836 0070 ? 8913304 10.1006/jmbi.1996.0572 1 'DNA-Nogalamycin Interactions: The Crystal Structure of d(TGATCA) Complexed with Nogalamycin' Biochemistry 34 415 425 1995 BICHAW US 0006-2960 0033 ? ? ? 2 ;DNA-Drug Refinement: A Comparison of the Programs NUCLSQ, PROLSQ, SHELXL93 and X-PLOR, Using the Low Temperature d(TGATCA)-Nogalamycin Structure ; 'Acta Crystallogr.,Sect.D' 52 299 314 1996 ABCRE6 DK 0907-4449 0766 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Smith, C.K.' 1 ? primary 'Brannigan, J.A.' 2 ? primary 'Moore, M.H.' 3 ? 1 'Smith, C.K.' 4 ? 1 'Davies, G.J.' 5 ? 1 'Dodson, E.J.' 6 ? 1 'Moore, M.H.' 7 ? 2 'Schuerman, G.S.' 8 ? 2 'Smith, C.K.' 9 ? 2 'Turkenburg, J.P.' 10 ? 2 'Dettmar, A.N.' 11 ? 2 'Van Meervelt, L.' 12 ? 2 'Moore, M.H.' 13 ? # _cell.entry_id 258D _cell.length_a 26.300 _cell.length_b 51.980 _cell.length_c 67.080 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 258D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*GP*TP*AP*CP*A)-3') ; 1808.229 4 ? ? ? ? 2 non-polymer syn NOGALAMYCIN 787.803 4 ? ? ? ? 3 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 non-polymer syn 'ACETATE ION' 59.044 2 ? ? ? ? 6 water nat water 18.015 97 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DG)(DT)(DA)(DC)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TGTACA _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DA n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 258D _struct_ref.pdbx_db_accession 258D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 258D A 1 ? 6 ? 258D 1 ? 6 ? 1 6 2 1 258D B 1 ? 6 ? 258D 7 ? 12 ? 7 12 3 1 258D C 1 ? 6 ? 258D 13 ? 18 ? 13 18 4 1 258D D 1 ? 6 ? 258D 19 ? 24 ? 19 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NGM non-polymer . NOGALAMYCIN ? 'C39 H49 N O16' 787.803 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 # _exptl.entry_id 258D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.17 _exptl_crystal.density_percent_sol 61.19 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details 'pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 SPERMINE ? ? ? 1 4 1 'NA CACODYLATE' ? ? ? 1 5 1 'MG ACETATE' ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 277.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type HENDRIX-LENTFER _diffrn_detector.pdbx_collection_date 1994-07-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X31' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X31 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 258D _reflns.observed_criterion_sigma_I 1.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 10.690 _reflns.d_resolution_high 1.580 _reflns.number_obs 13148 _reflns.number_all ? _reflns.percent_possible_obs 94.000 _reflns.pdbx_Rmerge_I_obs 0.0460000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.300 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.580 _reflns_shell.d_res_low 1.660 _reflns_shell.percent_possible_all 69.50 _reflns_shell.Rmerge_I_obs 0.1960000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.600 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 258D _refine.ls_number_reflns_obs 12358 _refine.ls_number_reflns_all 12358 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.690 _refine.ls_d_res_high 1.580 _refine.ls_percent_reflns_obs 94.000 _refine.ls_R_factor_obs 0.1880000 _refine.ls_R_factor_all 0.1920000 _refine.ls_R_factor_R_work 0.1880000 _refine.ls_R_factor_R_free 0.2370000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free 1235 _refine.ls_number_parameters 3310 _refine.ls_number_restraints 12049 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 21.78 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ;BABINET'S PRINCIPLE ; _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details 'ESTIMATED COORDINATE ERROR (A) : 0.12A' _refine.pdbx_starting_model 'NDB ENTRY DDF049 (PDB: 182D)' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'TAYLOR AND KENNARD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 480 _refine_hist.pdbx_number_atoms_ligand 247 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 824 _refine_hist.d_res_high 1.580 _refine_hist.d_res_low 10.690 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.023 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.089 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.091 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.004 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.022 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.057 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 258D _pdbx_refine.R_factor_all_no_cutoff 0.1920000 _pdbx_refine.R_factor_obs_no_cutoff 0.1880000 _pdbx_refine.free_R_factor_no_cutoff 0.2370000 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 10.000 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 1235.0 _pdbx_refine.R_factor_all_4sig_cutoff 0.1800000 _pdbx_refine.R_factor_obs_4sig_cutoff 0.1760000 _pdbx_refine.free_R_factor_4sig_cutoff 0.2390000 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 10.00 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1235.0 _pdbx_refine.number_reflns_obs_4sig_cutoff 12358 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 258D _struct.title 'FACTORS AFFECTING SEQUENCE SELECTIVITY ON NOGALAMYCIN INTERCALATION: THE CRYSTAL STRUCTURE OF D(TGTACA)-NOGALAMYCIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 258D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 4 ? I N N 5 ? J N N 5 ? K N N 2 ? L N N 2 ? M N N 6 ? N N N 6 ? O N N 6 ? P N N 6 ? # loop_ _struct_biol.id 1 2 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B DA 6 N7 ? ? ? 1_555 H NA . NA ? ? B DA 12 B NA 30 1_555 ? ? ? ? ? ? ? 2.684 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 1 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 1 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DT 1 N3 ? ? ? 1_555 D DA 6 N1 ? ? C DT 13 D DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DT 1 O4 ? ? ? 1_555 D DA 6 N6 ? ? C DT 13 D DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 14 D DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 5 O2 ? ? C DG 14 D DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 5 N4 ? ? C DG 14 D DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DT 3 N3 ? ? ? 1_555 D DA 4 N1 ? ? C DT 15 D DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DT 3 O4 ? ? ? 1_555 D DA 4 N6 ? ? C DT 15 D DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 3 N3 ? ? C DA 16 D DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 3 O4 ? ? C DA 16 D DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DC 5 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 17 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DC 5 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 17 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DC 5 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 17 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 1 N3 ? ? C DA 18 D DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 1 O4 ? ? C DA 18 D DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B NGM 25 ? 16 'BINDING SITE FOR RESIDUE NGM B 25' AC2 Software A NGM 26 ? 14 'BINDING SITE FOR RESIDUE NGM A 26' AC3 Software D NGM 27 ? 10 'BINDING SITE FOR RESIDUE NGM D 27' AC4 Software C NGM 28 ? 15 'BINDING SITE FOR RESIDUE NGM C 28' AC5 Software A SPM 29 ? 8 'BINDING SITE FOR RESIDUE SPM A 29' AC6 Software B NA 30 ? 3 'BINDING SITE FOR RESIDUE NA B 30' AC7 Software B ACT 31 ? 5 'BINDING SITE FOR RESIDUE ACT B 31' AC8 Software B ACT 32 ? 4 'BINDING SITE FOR RESIDUE ACT B 32' 'DRUG BINDING SITE' ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 DT A 1 ? DT A 1 . ? 3_645 ? 2 AC1 16 DC A 5 ? DC A 5 . ? 1_555 ? 3 AC1 16 DA A 6 ? DA A 6 . ? 1_555 ? 4 AC1 16 NGM E . ? NGM A 26 . ? 3_645 ? 5 AC1 16 DT B 1 ? DT B 7 . ? 1_555 ? 6 AC1 16 DG B 2 ? DG B 8 . ? 1_555 ? 7 AC1 16 DT B 3 ? DT B 9 . ? 1_555 ? 8 AC1 16 DA B 4 ? DA B 10 . ? 1_555 ? 9 AC1 16 HOH N . ? HOH B 46 . ? 1_555 ? 10 AC1 16 HOH N . ? HOH B 81 . ? 1_555 ? 11 AC1 16 HOH N . ? HOH B 82 . ? 1_555 ? 12 AC1 16 HOH N . ? HOH B 84 . ? 1_555 ? 13 AC1 16 HOH N . ? HOH B 95 . ? 1_555 ? 14 AC1 16 HOH N . ? HOH B 96 . ? 1_555 ? 15 AC1 16 DA C 6 ? DA C 18 . ? 1_555 ? 16 AC1 16 DA D 6 ? DA D 24 . ? 1_655 ? 17 AC2 14 DT A 1 ? DT A 1 . ? 1_555 ? 18 AC2 14 DG A 2 ? DG A 2 . ? 1_555 ? 19 AC2 14 DT A 3 ? DT A 3 . ? 1_555 ? 20 AC2 14 DA A 4 ? DA A 4 . ? 1_555 ? 21 AC2 14 SPM F . ? SPM A 29 . ? 1_555 ? 22 AC2 14 HOH M . ? HOH A 44 . ? 1_555 ? 23 AC2 14 HOH M . ? HOH A 64 . ? 1_555 ? 24 AC2 14 HOH M . ? HOH A 65 . ? 1_555 ? 25 AC2 14 HOH M . ? HOH A 77 . ? 1_555 ? 26 AC2 14 HOH M . ? HOH A 94 . ? 1_555 ? 27 AC2 14 DC B 5 ? DC B 11 . ? 1_555 ? 28 AC2 14 DA B 6 ? DA B 12 . ? 1_555 ? 29 AC2 14 NGM G . ? NGM B 25 . ? 3_655 ? 30 AC2 14 ACT J . ? ACT B 32 . ? 1_555 ? 31 AC3 10 SPM F . ? SPM A 29 . ? 4_456 ? 32 AC3 10 DC C 5 ? DC C 17 . ? 1_555 ? 33 AC3 10 DA C 6 ? DA C 18 . ? 1_555 ? 34 AC3 10 DT D 1 ? DT D 19 . ? 1_555 ? 35 AC3 10 DG D 2 ? DG D 20 . ? 1_555 ? 36 AC3 10 DT D 3 ? DT D 21 . ? 1_555 ? 37 AC3 10 DA D 4 ? DA D 22 . ? 1_555 ? 38 AC3 10 HOH P . ? HOH D 73 . ? 1_555 ? 39 AC3 10 HOH P . ? HOH D 108 . ? 1_555 ? 40 AC3 10 HOH P . ? HOH D 125 . ? 1_555 ? 41 AC4 15 DT A 1 ? DT A 1 . ? 4_456 ? 42 AC4 15 DG A 2 ? DG A 2 . ? 4_456 ? 43 AC4 15 DA B 6 ? DA B 12 . ? 3_545 ? 44 AC4 15 DT C 1 ? DT C 13 . ? 1_555 ? 45 AC4 15 DG C 2 ? DG C 14 . ? 1_555 ? 46 AC4 15 DT C 3 ? DT C 15 . ? 1_555 ? 47 AC4 15 DA C 4 ? DA C 16 . ? 1_555 ? 48 AC4 15 HOH O . ? HOH C 66 . ? 1_555 ? 49 AC4 15 HOH O . ? HOH C 71 . ? 1_555 ? 50 AC4 15 HOH O . ? HOH C 83 . ? 1_555 ? 51 AC4 15 HOH O . ? HOH C 86 . ? 1_555 ? 52 AC4 15 HOH O . ? HOH C 113 . ? 1_555 ? 53 AC4 15 HOH O . ? HOH C 126 . ? 1_555 ? 54 AC4 15 DC D 5 ? DC D 23 . ? 1_555 ? 55 AC4 15 DA D 6 ? DA D 24 . ? 1_555 ? 56 AC5 8 DT A 1 ? DT A 1 . ? 1_555 ? 57 AC5 8 DA A 6 ? DA A 6 . ? 3_655 ? 58 AC5 8 NGM E . ? NGM A 26 . ? 1_555 ? 59 AC5 8 HOH M . ? HOH A 48 . ? 1_555 ? 60 AC5 8 HOH M . ? HOH A 72 . ? 1_555 ? 61 AC5 8 DG D 2 ? DG D 20 . ? 4_556 ? 62 AC5 8 DT D 3 ? DT D 21 . ? 4_556 ? 63 AC5 8 NGM L . ? NGM D 27 . ? 4_556 ? 64 AC6 3 DA B 6 ? DA B 12 . ? 1_555 ? 65 AC6 3 ACT I . ? ACT B 31 . ? 1_555 ? 66 AC6 3 ACT J . ? ACT B 32 . ? 1_555 ? 67 AC7 5 DC B 5 ? DC B 11 . ? 1_555 ? 68 AC7 5 DA B 6 ? DA B 12 . ? 1_555 ? 69 AC7 5 NA H . ? NA B 30 . ? 1_555 ? 70 AC7 5 ACT J . ? ACT B 32 . ? 1_555 ? 71 AC7 5 HOH N . ? HOH B 106 . ? 1_555 ? 72 AC8 4 NGM E . ? NGM A 26 . ? 1_555 ? 73 AC8 4 HOH M . ? HOH A 34 . ? 1_555 ? 74 AC8 4 NA H . ? NA B 30 . ? 1_555 ? 75 AC8 4 ACT I . ? ACT B 31 . ? 1_555 ? # _database_PDB_matrix.entry_id 258D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 258D _atom_sites.fract_transf_matrix[1][1] 0.038023 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019238 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014908 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DA 6 6 6 DA A A . n B 1 1 DT 1 7 7 DT T B . n B 1 2 DG 2 8 8 DG G B . n B 1 3 DT 3 9 9 DT T B . n B 1 4 DA 4 10 10 DA A B . n B 1 5 DC 5 11 11 DC C B . n B 1 6 DA 6 12 12 DA A B . n C 1 1 DT 1 13 13 DT T C . n C 1 2 DG 2 14 14 DG G C . n C 1 3 DT 3 15 15 DT T C . n C 1 4 DA 4 16 16 DA A C . n C 1 5 DC 5 17 17 DC C C . n C 1 6 DA 6 18 18 DA A C . n D 1 1 DT 1 19 19 DT T D . n D 1 2 DG 2 20 20 DG G D . n D 1 3 DT 3 21 21 DT T D . n D 1 4 DA 4 22 22 DA A D . n D 1 5 DC 5 23 23 DC C D . n D 1 6 DA 6 24 24 DA A D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NGM 1 26 26 NGM NGM A . F 3 SPM 1 29 29 SPM SPM A . G 2 NGM 1 25 25 NGM NGM B . H 4 NA 1 30 30 NA NA B . I 5 ACT 1 31 31 ACT ACT B . J 5 ACT 1 32 32 ACT ACT B . K 2 NGM 1 28 28 NGM NGM C . L 2 NGM 1 27 27 NGM NGM D . M 6 HOH 1 32 32 HOH HOH A . M 6 HOH 2 34 34 HOH HOH A . M 6 HOH 3 39 39 HOH HOH A . M 6 HOH 4 44 44 HOH HOH A . M 6 HOH 5 48 48 HOH HOH A . M 6 HOH 6 49 49 HOH HOH A . M 6 HOH 7 57 57 HOH HOH A . M 6 HOH 8 58 58 HOH HOH A . M 6 HOH 9 59 59 HOH HOH A . M 6 HOH 10 60 60 HOH HOH A . M 6 HOH 11 61 61 HOH HOH A . M 6 HOH 12 64 64 HOH HOH A . M 6 HOH 13 65 65 HOH HOH A . M 6 HOH 14 72 72 HOH HOH A . M 6 HOH 15 77 77 HOH HOH A . M 6 HOH 16 87 87 HOH HOH A . M 6 HOH 17 92 92 HOH HOH A . M 6 HOH 18 93 93 HOH HOH A . M 6 HOH 19 94 94 HOH HOH A . M 6 HOH 20 99 99 HOH HOH A . M 6 HOH 21 105 105 HOH HOH A . M 6 HOH 22 110 110 HOH HOH A . M 6 HOH 23 112 112 HOH HOH A . M 6 HOH 24 114 114 HOH HOH A . M 6 HOH 25 120 120 HOH HOH A . N 6 HOH 1 35 35 HOH HOH B . N 6 HOH 2 38 38 HOH HOH B . N 6 HOH 3 43 43 HOH HOH B . N 6 HOH 4 46 46 HOH HOH B . N 6 HOH 5 47 47 HOH HOH B . N 6 HOH 6 52 52 HOH HOH B . N 6 HOH 7 56 56 HOH HOH B . N 6 HOH 8 62 62 HOH HOH B . N 6 HOH 9 69 69 HOH HOH B . N 6 HOH 10 70 70 HOH HOH B . N 6 HOH 11 76 76 HOH HOH B . N 6 HOH 12 81 81 HOH HOH B . N 6 HOH 13 82 82 HOH HOH B . N 6 HOH 14 84 84 HOH HOH B . N 6 HOH 15 88 88 HOH HOH B . N 6 HOH 16 91 91 HOH HOH B . N 6 HOH 17 95 95 HOH HOH B . N 6 HOH 18 96 96 HOH HOH B . N 6 HOH 19 100 100 HOH HOH B . N 6 HOH 20 106 106 HOH HOH B . N 6 HOH 21 115 115 HOH HOH B . N 6 HOH 22 119 119 HOH HOH B . N 6 HOH 23 121 121 HOH HOH B . N 6 HOH 24 122 122 HOH HOH B . N 6 HOH 25 123 123 HOH HOH B . N 6 HOH 26 128 128 HOH HOH B . O 6 HOH 1 33 33 HOH HOH C . O 6 HOH 2 36 36 HOH HOH C . O 6 HOH 3 42 42 HOH HOH C . O 6 HOH 4 51 51 HOH HOH C . O 6 HOH 5 54 54 HOH HOH C . O 6 HOH 6 55 55 HOH HOH C . O 6 HOH 7 63 63 HOH HOH C . O 6 HOH 8 66 66 HOH HOH C . O 6 HOH 9 68 68 HOH HOH C . O 6 HOH 10 71 71 HOH HOH C . O 6 HOH 11 74 74 HOH HOH C . O 6 HOH 12 75 75 HOH HOH C . O 6 HOH 13 79 79 HOH HOH C . O 6 HOH 14 80 80 HOH HOH C . O 6 HOH 15 83 83 HOH HOH C . O 6 HOH 16 85 85 HOH HOH C . O 6 HOH 17 86 86 HOH HOH C . O 6 HOH 18 89 89 HOH HOH C . O 6 HOH 19 101 101 HOH HOH C . O 6 HOH 20 104 104 HOH HOH C . O 6 HOH 21 111 111 HOH HOH C . O 6 HOH 22 113 113 HOH HOH C . O 6 HOH 23 116 116 HOH HOH C . O 6 HOH 24 117 117 HOH HOH C . O 6 HOH 25 124 124 HOH HOH C . O 6 HOH 26 126 126 HOH HOH C . O 6 HOH 27 127 127 HOH HOH C . P 6 HOH 1 37 37 HOH HOH D . P 6 HOH 2 40 40 HOH HOH D . P 6 HOH 3 41 41 HOH HOH D . P 6 HOH 4 45 45 HOH HOH D . P 6 HOH 5 50 50 HOH HOH D . P 6 HOH 6 53 53 HOH HOH D . P 6 HOH 7 67 67 HOH HOH D . P 6 HOH 8 73 73 HOH HOH D . P 6 HOH 9 78 78 HOH HOH D . P 6 HOH 10 90 90 HOH HOH D . P 6 HOH 11 97 97 HOH HOH D . P 6 HOH 12 98 98 HOH HOH D . P 6 HOH 13 102 102 HOH HOH D . P 6 HOH 14 103 103 HOH HOH D . P 6 HOH 15 107 107 HOH HOH D . P 6 HOH 16 108 108 HOH HOH D . P 6 HOH 17 109 109 HOH HOH D . P 6 HOH 18 118 118 HOH HOH D . P 6 HOH 19 125 125 HOH HOH D . # _struct_site_keywords.site_id 'DRUG BINDING SITE' _struct_site_keywords.text INTERCALATION # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,I,J,M,N 2 1 C,D,K,L,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-06-20 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' diffrn_source 3 4 'Structure model' pdbx_initial_refinement_model 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 SHELXL-93 refinement . ? 2 DENZO 'data reduction' . ? 3 CCP4 'data scaling' . ? 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DT 1 ? ? "C4'" A DT 1 ? ? 1.557 1.512 0.045 0.007 N 2 1 "C4'" A DT 1 ? ? "C3'" A DT 1 ? ? 1.457 1.521 -0.064 0.010 N 3 1 "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.566 1.512 0.054 0.007 N 4 1 "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 1.580 1.519 0.061 0.010 N 5 1 P A DT 3 ? ? "O5'" A DT 3 ? ? 1.679 1.593 0.086 0.010 N 6 1 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.534 1.496 0.038 0.006 N 7 1 P A DA 4 ? ? "O5'" A DA 4 ? ? 1.662 1.593 0.069 0.010 N 8 1 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.568 1.512 0.056 0.007 N 9 1 "O3'" A DA 4 ? ? P A DC 5 ? ? 1.690 1.607 0.083 0.012 Y 10 1 P A DC 5 ? ? "O5'" A DC 5 ? ? 1.659 1.593 0.066 0.010 N 11 1 "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 1.562 1.512 0.050 0.007 N 12 1 "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 1.456 1.521 -0.065 0.010 N 13 1 "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 1.597 1.519 0.078 0.010 N 14 1 "O3'" A DC 5 ? ? P A DA 6 ? ? 1.686 1.607 0.079 0.012 Y 15 1 C6 A DA 6 ? ? N1 A DA 6 ? ? 1.301 1.351 -0.050 0.007 N 16 1 P B DG 8 ? ? "O5'" B DG 8 ? ? 1.659 1.593 0.066 0.010 N 17 1 "C5'" B DG 8 ? ? "C4'" B DG 8 ? ? 1.567 1.512 0.055 0.007 N 18 1 "O3'" B DA 10 ? ? P B DC 11 ? ? 1.688 1.607 0.081 0.012 Y 19 1 P B DC 11 ? ? "O5'" B DC 11 ? ? 1.663 1.593 0.070 0.010 N 20 1 "C5'" B DC 11 ? ? "C4'" B DC 11 ? ? 1.569 1.512 0.057 0.007 N 21 1 "C4'" B DC 11 ? ? "C3'" B DC 11 ? ? 1.459 1.521 -0.062 0.010 N 22 1 "C2'" B DC 11 ? ? "C1'" B DC 11 ? ? 1.600 1.519 0.081 0.010 N 23 1 "C5'" C DT 13 ? ? "C4'" C DT 13 ? ? 1.558 1.512 0.046 0.007 N 24 1 "C4'" C DT 13 ? ? "C3'" C DT 13 ? ? 1.453 1.521 -0.068 0.010 N 25 1 "C5'" C DG 14 ? ? "C4'" C DG 14 ? ? 1.560 1.512 0.048 0.007 N 26 1 "O3'" C DG 14 ? ? P C DT 15 ? ? 1.680 1.607 0.073 0.012 Y 27 1 "C4'" C DT 15 ? ? "C3'" C DT 15 ? ? 1.456 1.521 -0.065 0.010 N 28 1 "C5'" C DA 16 ? ? "C4'" C DA 16 ? ? 1.562 1.512 0.050 0.007 N 29 1 "O3'" C DA 16 ? ? P C DC 17 ? ? 1.694 1.607 0.087 0.012 Y 30 1 P C DC 17 ? ? "O5'" C DC 17 ? ? 1.674 1.593 0.081 0.010 N 31 1 "C5'" C DC 17 ? ? "C4'" C DC 17 ? ? 1.565 1.512 0.053 0.007 N 32 1 "C4'" C DC 17 ? ? "C3'" C DC 17 ? ? 1.448 1.521 -0.073 0.010 N 33 1 "C2'" C DC 17 ? ? "C1'" C DC 17 ? ? 1.598 1.519 0.079 0.010 N 34 1 "O4'" C DC 17 ? ? "C4'" C DC 17 ? ? 1.504 1.449 0.055 0.009 N 35 1 "C5'" C DA 18 ? ? "C4'" C DA 18 ? ? 1.566 1.512 0.054 0.007 N 36 1 "C4'" C DA 18 ? ? "C3'" C DA 18 ? ? 1.456 1.521 -0.065 0.010 N 37 1 "C5'" D DT 19 ? ? "C4'" D DT 19 ? ? 1.559 1.512 0.047 0.007 N 38 1 "C4'" D DT 19 ? ? "C3'" D DT 19 ? ? 1.458 1.521 -0.063 0.010 N 39 1 "O3'" D DT 19 ? ? P D DG 20 ? ? 1.684 1.607 0.077 0.012 Y 40 1 P D DG 20 ? ? "O5'" D DG 20 ? ? 1.659 1.593 0.066 0.010 N 41 1 "C5'" D DG 20 ? ? "C4'" D DG 20 ? ? 1.570 1.512 0.058 0.007 N 42 1 "C2'" D DG 20 ? ? "C1'" D DG 20 ? ? 1.586 1.519 0.067 0.010 N 43 1 P D DA 22 ? ? "O5'" D DA 22 ? ? 1.665 1.593 0.072 0.010 N 44 1 "C4'" D DA 22 ? ? "C3'" D DA 22 ? ? 1.458 1.521 -0.063 0.010 N 45 1 P D DC 23 ? ? "O5'" D DC 23 ? ? 1.659 1.593 0.066 0.010 N 46 1 "C5'" D DC 23 ? ? "C4'" D DC 23 ? ? 1.562 1.512 0.050 0.007 N 47 1 "C2'" D DC 23 ? ? "C1'" D DC 23 ? ? 1.604 1.519 0.085 0.010 N 48 1 "O3'" D DC 23 ? ? P D DA 24 ? ? 1.695 1.607 0.088 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DT 1 ? ? "C5'" A DT 1 ? ? "C4'" A DT 1 ? ? 103.75 109.40 -5.65 0.80 N 2 1 "C4'" A DT 1 ? ? "C3'" A DT 1 ? ? "C2'" A DT 1 ? ? 111.82 103.10 8.72 0.90 N 3 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 111.44 108.30 3.14 0.30 N 4 1 N3 A DT 1 ? ? C4 A DT 1 ? ? O4 A DT 1 ? ? 127.05 119.90 7.15 0.60 N 5 1 C5 A DT 1 ? ? C4 A DT 1 ? ? O4 A DT 1 ? ? 118.80 124.90 -6.10 0.70 N 6 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 101.26 109.40 -8.14 0.80 N 7 1 "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? 109.96 103.10 6.86 0.90 N 8 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.15 108.30 2.85 0.30 N 9 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 132.24 128.60 3.64 0.60 N 10 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DT 3 ? ? 133.58 119.70 13.88 1.20 Y 11 1 OP1 A DT 3 ? ? P A DT 3 ? ? OP2 A DT 3 ? ? 135.59 119.60 15.99 1.50 N 12 1 "O5'" A DT 3 ? ? "C5'" A DT 3 ? ? "C4'" A DT 3 ? ? 102.81 109.40 -6.59 0.80 N 13 1 P A DT 3 ? ? "O5'" A DT 3 ? ? "C5'" A DT 3 ? ? 107.44 120.90 -13.46 1.60 N 14 1 "C4'" A DT 3 ? ? "C3'" A DT 3 ? ? "C2'" A DT 3 ? ? 111.25 103.10 8.15 0.90 N 15 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.35 108.30 2.05 0.30 N 16 1 "C3'" A DT 3 ? ? "O3'" A DT 3 ? ? P A DA 4 ? ? 130.26 119.70 10.56 1.20 Y 17 1 OP1 A DA 4 ? ? P A DA 4 ? ? OP2 A DA 4 ? ? 135.92 119.60 16.32 1.50 N 18 1 "O5'" A DA 4 ? ? "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 101.12 109.40 -8.28 0.80 N 19 1 "C4'" A DA 4 ? ? "C3'" A DA 4 ? ? "C2'" A DA 4 ? ? 110.09 103.10 6.99 0.90 N 20 1 "C3'" A DA 4 ? ? "O3'" A DA 4 ? ? P A DC 5 ? ? 130.79 119.70 11.09 1.20 Y 21 1 OP1 A DC 5 ? ? P A DC 5 ? ? OP2 A DC 5 ? ? 140.01 119.60 20.41 1.50 N 22 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 101.71 109.40 -7.69 0.80 N 23 1 "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? 108.87 103.10 5.77 0.90 N 24 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 115.34 108.30 7.04 0.30 N 25 1 C6 A DC 5 ? ? N1 A DC 5 ? ? C2 A DC 5 ? ? 122.70 120.30 2.40 0.40 N 26 1 C2 A DC 5 ? ? N3 A DC 5 ? ? C4 A DC 5 ? ? 114.63 119.90 -5.27 0.50 N 27 1 N3 A DC 5 ? ? C4 A DC 5 ? ? C5 A DC 5 ? ? 126.56 121.90 4.66 0.40 N 28 1 "O5'" A DA 6 ? ? "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? 102.54 109.40 -6.86 0.80 N 29 1 "C4'" A DA 6 ? ? "C3'" A DA 6 ? ? "C2'" A DA 6 ? ? 110.40 103.10 7.30 0.90 N 30 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 125.22 129.30 -4.08 0.50 N 31 1 C2 A DA 6 ? ? N3 A DA 6 ? ? C4 A DA 6 ? ? 115.80 110.60 5.20 0.50 N 32 1 N9 A DA 6 ? ? C4 A DA 6 ? ? C5 A DA 6 ? ? 102.84 105.80 -2.96 0.40 N 33 1 N3 A DA 6 ? ? C4 A DA 6 ? ? N9 A DA 6 ? ? 132.78 127.40 5.38 0.80 N 34 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 117.86 123.70 -5.84 0.80 N 35 1 "O5'" B DT 7 ? ? "C5'" B DT 7 ? ? "C4'" B DT 7 ? ? 102.73 109.40 -6.67 0.80 N 36 1 "O4'" B DT 7 ? ? "C4'" B DT 7 ? ? "C3'" B DT 7 ? ? 101.97 104.50 -2.53 0.40 N 37 1 "C4'" B DT 7 ? ? "C3'" B DT 7 ? ? "C2'" B DT 7 ? ? 108.57 103.10 5.47 0.90 N 38 1 C2 B DT 7 ? ? N3 B DT 7 ? ? C4 B DT 7 ? ? 122.17 127.20 -5.03 0.60 N 39 1 C5 B DT 7 ? ? C6 B DT 7 ? ? N1 B DT 7 ? ? 119.05 123.70 -4.65 0.60 N 40 1 "C3'" B DT 7 ? ? "O3'" B DT 7 ? ? P B DG 8 ? ? 134.30 119.70 14.60 1.20 Y 41 1 OP1 B DG 8 ? ? P B DG 8 ? ? OP2 B DG 8 ? ? 130.36 119.60 10.76 1.50 N 42 1 "O5'" B DG 8 ? ? "C5'" B DG 8 ? ? "C4'" B DG 8 ? ? 102.22 109.40 -7.18 0.80 N 43 1 "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? "C2'" B DG 8 ? ? 110.37 103.10 7.27 0.90 N 44 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 111.62 108.30 3.32 0.30 N 45 1 C6 B DG 8 ? ? N1 B DG 8 ? ? C2 B DG 8 ? ? 119.02 125.10 -6.08 0.60 N 46 1 C5 B DG 8 ? ? C6 B DG 8 ? ? N1 B DG 8 ? ? 115.56 111.50 4.06 0.50 N 47 1 N1 B DG 8 ? ? C2 B DG 8 ? ? N2 B DG 8 ? ? 109.73 116.20 -6.47 0.90 N 48 1 N1 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 114.04 119.90 -5.86 0.60 N 49 1 "C3'" B DG 8 ? ? "O3'" B DG 8 ? ? P B DT 9 ? ? 134.40 119.70 14.70 1.20 Y 50 1 OP1 B DT 9 ? ? P B DT 9 ? ? OP2 B DT 9 ? ? 131.16 119.60 11.56 1.50 N 51 1 "O5'" B DT 9 ? ? "C5'" B DT 9 ? ? "C4'" B DT 9 ? ? 100.40 109.40 -9.00 0.80 N 52 1 "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? "C2'" B DT 9 ? ? 110.04 103.10 6.94 0.90 N 53 1 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? N1 B DT 9 ? ? 110.76 108.30 2.46 0.30 N 54 1 "C3'" B DT 9 ? ? "O3'" B DT 9 ? ? P B DA 10 ? ? 129.81 119.70 10.11 1.20 Y 55 1 OP1 B DA 10 ? ? P B DA 10 ? ? OP2 B DA 10 ? ? 137.96 119.60 18.36 1.50 N 56 1 "O5'" B DA 10 ? ? "C5'" B DA 10 ? ? "C4'" B DA 10 ? ? 101.70 109.40 -7.70 0.80 N 57 1 "C4'" B DA 10 ? ? "C3'" B DA 10 ? ? "C2'" B DA 10 ? ? 110.01 103.10 6.91 0.90 N 58 1 C6 B DA 10 ? ? N1 B DA 10 ? ? C2 B DA 10 ? ? 122.63 118.60 4.03 0.60 N 59 1 OP1 B DC 11 ? ? P B DC 11 ? ? OP2 B DC 11 ? ? 145.18 119.60 25.58 1.50 N 60 1 "O5'" B DC 11 ? ? "C5'" B DC 11 ? ? "C4'" B DC 11 ? ? 100.59 109.40 -8.81 0.80 N 61 1 "C4'" B DC 11 ? ? "C3'" B DC 11 ? ? "C2'" B DC 11 ? ? 110.18 103.10 7.08 0.90 N 62 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 116.63 108.30 8.33 0.30 N 63 1 N3 B DC 11 ? ? C4 B DC 11 ? ? N4 B DC 11 ? ? 122.38 118.00 4.38 0.70 N 64 1 C5 B DC 11 ? ? C4 B DC 11 ? ? N4 B DC 11 ? ? 115.66 120.20 -4.54 0.70 N 65 1 "C4'" B DA 12 ? ? "C3'" B DA 12 ? ? "C2'" B DA 12 ? ? 109.10 103.10 6.00 0.90 N 66 1 C6 B DA 12 ? ? N1 B DA 12 ? ? C2 B DA 12 ? ? 122.50 118.60 3.90 0.60 N 67 1 C2 B DA 12 ? ? N3 B DA 12 ? ? C4 B DA 12 ? ? 104.82 110.60 -5.78 0.50 N 68 1 C4 B DA 12 ? ? C5 B DA 12 ? ? C6 B DA 12 ? ? 121.20 117.00 4.20 0.50 N 69 1 C5 B DA 12 ? ? C6 B DA 12 ? ? N1 B DA 12 ? ? 111.68 117.70 -6.02 0.50 N 70 1 C6 B DA 12 ? ? C5 B DA 12 ? ? N7 B DA 12 ? ? 127.55 132.30 -4.75 0.70 N 71 1 "O5'" C DT 13 ? ? "C5'" C DT 13 ? ? "C4'" C DT 13 ? ? 104.07 109.40 -5.33 0.80 N 72 1 "C4'" C DT 13 ? ? "C3'" C DT 13 ? ? "C2'" C DT 13 ? ? 109.91 103.10 6.81 0.90 N 73 1 "O4'" C DT 13 ? ? "C1'" C DT 13 ? ? N1 C DT 13 ? ? 112.10 108.30 3.80 0.30 N 74 1 OP1 C DG 14 ? ? P C DG 14 ? ? OP2 C DG 14 ? ? 130.41 119.60 10.81 1.50 N 75 1 "O5'" C DG 14 ? ? "C5'" C DG 14 ? ? "C4'" C DG 14 ? ? 101.98 109.40 -7.42 0.80 N 76 1 "C4'" C DG 14 ? ? "C3'" C DG 14 ? ? "C2'" C DG 14 ? ? 109.81 103.10 6.71 0.90 N 77 1 "O4'" C DG 14 ? ? "C1'" C DG 14 ? ? N9 C DG 14 ? ? 111.62 108.30 3.32 0.30 N 78 1 "C3'" C DG 14 ? ? "O3'" C DG 14 ? ? P C DT 15 ? ? 134.87 119.70 15.17 1.20 Y 79 1 OP1 C DT 15 ? ? P C DT 15 ? ? OP2 C DT 15 ? ? 136.54 119.60 16.94 1.50 N 80 1 "O5'" C DT 15 ? ? "C5'" C DT 15 ? ? "C4'" C DT 15 ? ? 100.52 109.40 -8.88 0.80 N 81 1 "C4'" C DT 15 ? ? "C3'" C DT 15 ? ? "C2'" C DT 15 ? ? 110.45 103.10 7.35 0.90 N 82 1 "C3'" C DT 15 ? ? "O3'" C DT 15 ? ? P C DA 16 ? ? 133.13 119.70 13.43 1.20 Y 83 1 OP1 C DA 16 ? ? P C DA 16 ? ? OP2 C DA 16 ? ? 137.52 119.60 17.92 1.50 N 84 1 "O5'" C DA 16 ? ? "C5'" C DA 16 ? ? "C4'" C DA 16 ? ? 98.06 109.40 -11.34 0.80 N 85 1 "C4'" C DA 16 ? ? "C3'" C DA 16 ? ? "C2'" C DA 16 ? ? 110.56 103.10 7.46 0.90 N 86 1 N1 C DA 16 ? ? C2 C DA 16 ? ? N3 C DA 16 ? ? 125.76 129.30 -3.54 0.50 N 87 1 OP1 C DC 17 ? ? P C DC 17 ? ? OP2 C DC 17 ? ? 146.26 119.60 26.66 1.50 N 88 1 "O5'" C DC 17 ? ? "C5'" C DC 17 ? ? "C4'" C DC 17 ? ? 101.63 109.40 -7.77 0.80 N 89 1 "C4'" C DC 17 ? ? "C3'" C DC 17 ? ? "C2'" C DC 17 ? ? 109.67 103.10 6.57 0.90 N 90 1 "O4'" C DC 17 ? ? "C1'" C DC 17 ? ? N1 C DC 17 ? ? 116.53 108.30 8.23 0.30 N 91 1 C2 C DC 17 ? ? N3 C DC 17 ? ? C4 C DC 17 ? ? 123.37 119.90 3.47 0.50 N 92 1 "O5'" C DA 18 ? ? "C5'" C DA 18 ? ? "C4'" C DA 18 ? ? 101.81 109.40 -7.59 0.80 N 93 1 "C4'" C DA 18 ? ? "C3'" C DA 18 ? ? "C2'" C DA 18 ? ? 109.37 103.10 6.27 0.90 N 94 1 C2 C DA 18 ? ? N3 C DA 18 ? ? C4 C DA 18 ? ? 107.40 110.60 -3.20 0.50 N 95 1 "O5'" D DT 19 ? ? "C5'" D DT 19 ? ? "C4'" D DT 19 ? ? 104.01 109.40 -5.39 0.80 N 96 1 "C4'" D DT 19 ? ? "C3'" D DT 19 ? ? "C2'" D DT 19 ? ? 111.00 103.10 7.90 0.90 N 97 1 "O4'" D DT 19 ? ? "C1'" D DT 19 ? ? N1 D DT 19 ? ? 113.96 108.30 5.66 0.30 N 98 1 N1 D DT 19 ? ? C2 D DT 19 ? ? O2 D DT 19 ? ? 117.99 123.10 -5.11 0.80 N 99 1 N3 D DT 19 ? ? C2 D DT 19 ? ? O2 D DT 19 ? ? 126.80 122.30 4.50 0.60 N 100 1 OP1 D DG 20 ? ? P D DG 20 ? ? OP2 D DG 20 ? ? 140.82 119.60 21.22 1.50 N 101 1 "O5'" D DG 20 ? ? "C5'" D DG 20 ? ? "C4'" D DG 20 ? ? 99.77 109.40 -9.63 0.80 N 102 1 "C4'" D DG 20 ? ? "C3'" D DG 20 ? ? "C2'" D DG 20 ? ? 110.36 103.10 7.26 0.90 N 103 1 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? N9 D DG 20 ? ? 110.89 108.30 2.59 0.30 N 104 1 C2 D DG 20 ? ? N3 D DG 20 ? ? C4 D DG 20 ? ? 106.62 111.90 -5.28 0.50 N 105 1 C5 D DG 20 ? ? C6 D DG 20 ? ? N1 D DG 20 ? ? 107.83 111.50 -3.67 0.50 N 106 1 N7 D DG 20 ? ? C8 D DG 20 ? ? N9 D DG 20 ? ? 117.11 113.10 4.01 0.50 N 107 1 C8 D DG 20 ? ? N9 D DG 20 ? ? C4 D DG 20 ? ? 103.13 106.40 -3.27 0.40 N 108 1 "C3'" D DG 20 ? ? "O3'" D DG 20 ? ? P D DT 21 ? ? 130.65 119.70 10.95 1.20 Y 109 1 OP1 D DT 21 ? ? P D DT 21 ? ? OP2 D DT 21 ? ? 134.18 119.60 14.58 1.50 N 110 1 "O5'" D DT 21 ? ? "C5'" D DT 21 ? ? "C4'" D DT 21 ? ? 104.06 109.40 -5.34 0.80 N 111 1 "C4'" D DT 21 ? ? "C3'" D DT 21 ? ? "C2'" D DT 21 ? ? 110.35 103.10 7.25 0.90 N 112 1 "O4'" D DT 21 ? ? "C1'" D DT 21 ? ? N1 D DT 21 ? ? 110.59 108.30 2.29 0.30 N 113 1 OP1 D DA 22 ? ? P D DA 22 ? ? OP2 D DA 22 ? ? 137.52 119.60 17.92 1.50 N 114 1 "O5'" D DA 22 ? ? "C5'" D DA 22 ? ? "C4'" D DA 22 ? ? 103.35 109.40 -6.05 0.80 N 115 1 OP1 D DC 23 ? ? P D DC 23 ? ? OP2 D DC 23 ? ? 144.77 119.60 25.17 1.50 N 116 1 "O5'" D DC 23 ? ? "C5'" D DC 23 ? ? "C4'" D DC 23 ? ? 100.68 109.40 -8.72 0.80 N 117 1 "O4'" D DC 23 ? ? "C1'" D DC 23 ? ? N1 D DC 23 ? ? 118.34 108.30 10.04 0.30 N 118 1 N1 D DC 23 ? ? C2 D DC 23 ? ? O2 D DC 23 ? ? 125.37 118.90 6.47 0.60 N 119 1 N3 D DC 23 ? ? C2 D DC 23 ? ? O2 D DC 23 ? ? 116.97 121.90 -4.93 0.70 N 120 1 OP1 D DA 24 ? ? P D DA 24 ? ? OP2 D DA 24 ? ? 137.02 119.60 17.42 1.50 N 121 1 "C4'" D DA 24 ? ? "C3'" D DA 24 ? ? "C2'" D DA 24 ? ? 108.83 103.10 5.73 0.90 N 122 1 N1 D DA 24 ? ? C2 D DA 24 ? ? N3 D DA 24 ? ? 125.01 129.30 -4.29 0.50 N # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C9 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id C _pdbx_validate_chiral.auth_comp_id NGM _pdbx_validate_chiral.auth_seq_id 28 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 258D 'double helix' 258D 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 6 1_555 -0.117 -0.087 -0.200 14.235 2.794 -2.121 1 A_DT1:DA12_B A 1 ? B 12 ? 20 1 1 A DG 2 1_555 B DC 5 1_555 -0.184 -0.067 -0.533 -26.477 6.742 -0.258 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DT 3 1_555 B DA 4 1_555 -0.023 -0.092 0.222 -4.181 2.292 3.166 3 A_DT3:DA10_B A 3 ? B 10 ? 20 1 1 A DA 4 1_555 B DT 3 1_555 0.048 -0.117 0.101 0.765 1.331 1.413 4 A_DA4:DT9_B A 4 ? B 9 ? 20 1 1 A DC 5 1_555 B DG 2 1_555 0.290 -0.068 -0.328 23.313 4.880 0.502 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DA 6 1_555 B DT 1 1_555 -0.203 -0.120 -0.042 -11.202 -0.667 1.670 6 A_DA6:DT7_B A 6 ? B 7 ? 20 1 1 C DT 1 1_555 D DA 6 1_555 -0.115 -0.046 -0.101 16.431 3.961 -2.891 7 C_DT13:DA24_D C 13 ? D 24 ? 20 1 1 C DG 2 1_555 D DC 5 1_555 -0.338 -0.081 -0.554 -26.328 8.544 0.277 8 C_DG14:DC23_D C 14 ? D 23 ? 19 1 1 C DT 3 1_555 D DA 4 1_555 0.000 -0.101 0.078 0.438 3.632 4.658 9 C_DT15:DA22_D C 15 ? D 22 ? 20 1 1 C DA 4 1_555 D DT 3 1_555 0.062 -0.164 0.022 3.075 5.362 1.546 10 C_DA16:DT21_D C 16 ? D 21 ? 20 1 1 C DC 5 1_555 D DG 2 1_555 0.260 -0.061 -0.383 25.099 7.588 -0.280 11 C_DC17:DG20_D C 17 ? D 20 ? 19 1 1 C DA 6 1_555 D DT 1 1_555 0.164 -0.147 -0.189 -17.808 2.646 -2.672 12 C_DA18:DT19_D C 18 ? D 19 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 6 1_555 A DG 2 1_555 B DC 5 1_555 1.051 0.435 7.269 10.405 1.038 37.083 0.368 1.340 7.301 1.594 -15.974 38.479 1 AA_DT1DG2:DC11DA12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 5 1_555 A DT 3 1_555 B DA 4 1_555 -0.259 -0.243 2.949 -5.781 3.505 26.210 -1.325 -0.775 2.882 7.569 12.486 27.053 2 AA_DG2DT3:DA10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DT 3 1_555 B DA 4 1_555 A DA 4 1_555 B DT 3 1_555 -0.028 -0.701 3.218 1.127 -4.548 36.163 -0.492 0.200 3.276 -7.289 -1.805 36.455 3 AA_DT3DA4:DT9DA10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DA 4 1_555 B DT 3 1_555 A DC 5 1_555 B DG 2 1_555 0.157 -0.277 2.992 2.994 4.497 26.201 -1.663 0.368 2.904 9.788 -6.516 26.743 4 AA_DA4DC5:DG8DT9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A DA 6 1_555 B DT 1 1_555 -1.398 0.293 7.034 -12.131 -0.873 31.965 0.808 -1.910 7.074 -1.518 21.098 34.144 5 AA_DC5DA6:DT7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? 1 C DT 1 1_555 D DA 6 1_555 C DG 2 1_555 D DC 5 1_555 1.154 0.195 7.267 10.044 -1.274 34.695 0.724 1.369 7.298 -2.083 -16.415 36.098 6 CC_DT13DG14:DC23DA24_DD C 13 ? D 24 ? C 14 ? D 23 ? 1 C DG 2 1_555 D DC 5 1_555 C DT 3 1_555 D DA 4 1_555 -0.296 -0.262 2.869 -5.829 7.142 26.259 -2.051 -0.613 2.707 15.140 12.355 27.804 7 CC_DG14DT15:DA22DC23_DD C 14 ? D 23 ? C 15 ? D 22 ? 1 C DT 3 1_555 D DA 4 1_555 C DA 4 1_555 D DT 3 1_555 -0.078 -0.668 3.151 0.435 -0.308 37.607 -0.998 0.175 3.155 -0.478 -0.675 37.611 8 CC_DT15DA16:DT21DA22_DD C 15 ? D 22 ? C 16 ? D 21 ? 1 C DA 4 1_555 D DT 3 1_555 C DC 5 1_555 D DG 2 1_555 0.416 -0.303 2.981 3.791 5.645 26.415 -1.929 -0.018 2.885 12.101 -8.126 27.261 9 CC_DA16DC17:DG20DT21_DD C 16 ? D 21 ? C 17 ? D 20 ? 1 C DC 5 1_555 D DG 2 1_555 C DA 6 1_555 D DT 1 1_555 -1.122 0.309 7.326 -6.383 -3.616 35.955 1.614 -0.198 7.347 -5.784 10.210 36.671 10 CC_DC17DA18:DT19DG20_DD C 17 ? D 20 ? C 18 ? D 19 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 NOGALAMYCIN NGM 3 SPERMINE SPM 4 'SODIUM ION' NA 5 'ACETATE ION' ACT 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 182D _pdbx_initial_refinement_model.details 'NDB ENTRY DDF049 (PDB: 182D)' #