data_25LU # _entry.id 25LU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 25LU pdb_000025lu 10.2210/pdb25lu/pdb WWPDB D_1300072670 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-09-30 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 25LU _pdbx_database_status.recvd_initial_deposition_date 2026-04-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email j.kondo@sophia.ac.jp _pdbx_contact_author.name_first Jiro _pdbx_contact_author.name_last Kondo _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5682-3685 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kondo, J.' 1 0000-0002-5682-3685 'Sasamoto, E.' 2 ? 'Ando, S.' 3 0009-0007-3991-7851 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Rna _citation.journal_id_ASTM RNARFU _citation.journal_id_CSD 2122 _citation.journal_id_ISSN 1469-9001 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 32 _citation.language ? _citation.page_first 1544 _citation.page_last 1559 _citation.title '4MRNA: a new approach for nucleic acid molecular replacement using models with diverse parameter patterns.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1261/rna.081112.126 _citation.pdbx_database_id_PubMed 42469012 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ando, S.' 1 0009-0007-3991-7851 primary 'Kondo, J.' 2 0000-0002-5682-3685 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*GP*GP*TP*GP*CP*TP*(2PR)P*CP*CP*C)-3') ; 3350.185 8 ? ? ? ? 2 water nat water 18.015 95 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DG)(DT)(DG)(DC)(DT)(2PR)(DC)(DC)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GGGTGCTGCCC _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DT n 1 5 DG n 1 6 DC n 1 7 DT n 1 8 2PR n 1 9 DC n 1 10 DC n 1 11 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 11 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2PR 'DNA linking' n "2-AMINO-9-[2-DEOXYRIBOFURANOSYL]-9H-PURINE-5'-MONOPHOSPHATE" "2-AMINOPURINE-2'-DEOXYRIBO-5'-MONOPHOSPHATE" 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 2PR 8 8 8 2PR 2PR A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DC 10 10 10 DC DC A . n A 1 11 DC 11 11 11 DC DC A . n B 1 1 DG 1 1 1 DG DG B . n B 1 2 DG 2 2 2 DG DG B . n B 1 3 DG 3 3 3 DG DG B . n B 1 4 DT 4 4 4 DT DT B . n B 1 5 DG 5 5 5 DG DG B . n B 1 6 DC 6 6 6 DC DC B . n B 1 7 DT 7 7 7 DT DT B . n B 1 8 2PR 8 8 8 2PR 2PR B . n B 1 9 DC 9 9 9 DC DC B . n B 1 10 DC 10 10 10 DC DC B . n B 1 11 DC 11 11 11 DC DC B . n C 1 1 DG 1 1 1 DG DG C . n C 1 2 DG 2 2 2 DG DG C . n C 1 3 DG 3 3 3 DG DG C . n C 1 4 DT 4 4 4 DT DT C . n C 1 5 DG 5 5 5 DG DG C . n C 1 6 DC 6 6 6 DC DC C . n C 1 7 DT 7 7 7 DT DT C . n C 1 8 2PR 8 8 8 2PR 2PR C . n C 1 9 DC 9 9 9 DC DC C . n C 1 10 DC 10 10 10 DC DC C . n C 1 11 DC 11 11 11 DC DC C . n D 1 1 DG 1 1 1 DG DG D . n D 1 2 DG 2 2 2 DG DG D . n D 1 3 DG 3 3 3 DG DG D . n D 1 4 DT 4 4 4 DT DT D . n D 1 5 DG 5 5 5 DG DG D . n D 1 6 DC 6 6 6 DC DC D . n D 1 7 DT 7 7 7 DT DT D . n D 1 8 2PR 8 8 8 2PR 2PR D . n D 1 9 DC 9 9 9 DC DC D . n D 1 10 DC 10 10 10 DC DC D . n D 1 11 DC 11 11 11 DC DC D . n E 1 1 DG 1 1 1 DG DG E . n E 1 2 DG 2 2 2 DG DG E . n E 1 3 DG 3 3 3 DG DG E . n E 1 4 DT 4 4 4 DT DT E . n E 1 5 DG 5 5 5 DG DG E . n E 1 6 DC 6 6 6 DC DC E . n E 1 7 DT 7 7 7 DT DT E . n E 1 8 2PR 8 8 8 2PR 2PR E . n E 1 9 DC 9 9 9 DC DC E . n E 1 10 DC 10 10 10 DC DC E . n E 1 11 DC 11 11 11 DC DC E . n F 1 1 DG 1 1 1 DG DG F . n F 1 2 DG 2 2 2 DG DG F . n F 1 3 DG 3 3 3 DG DG F . n F 1 4 DT 4 4 4 DT DT F . n F 1 5 DG 5 5 5 DG DG F . n F 1 6 DC 6 6 6 DC DC F . n F 1 7 DT 7 7 7 DT DT F . n F 1 8 2PR 8 8 8 2PR 2PR F . n F 1 9 DC 9 9 9 DC DC F . n F 1 10 DC 10 10 10 DC DC F . n F 1 11 DC 11 11 11 DC DC F . n G 1 1 DG 1 1 1 DG DG G . n G 1 2 DG 2 2 2 DG DG G . n G 1 3 DG 3 3 3 DG DG G . n G 1 4 DT 4 4 4 DT DT G . n G 1 5 DG 5 5 5 DG DG G . n G 1 6 DC 6 6 6 DC DC G . n G 1 7 DT 7 7 7 DT DT G . n G 1 8 2PR 8 8 8 2PR 2PR G . n G 1 9 DC 9 9 9 DC DC G . n G 1 10 DC 10 10 10 DC DC G . n G 1 11 DC 11 11 11 DC DC G . n H 1 1 DG 1 1 1 DG DG H . n H 1 2 DG 2 2 2 DG DG H . n H 1 3 DG 3 3 3 DG DG H . n H 1 4 DT 4 4 4 DT DT H . n H 1 5 DG 5 5 5 DG DG H . n H 1 6 DC 6 6 6 DC DC H . n H 1 7 DT 7 7 7 DT DT H . n H 1 8 2PR 8 8 8 2PR 2PR H . n H 1 9 DC 9 9 9 DC DC H . n H 1 10 DC 10 10 10 DC DC H . n H 1 11 DC 11 11 11 DC DC H . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 2PR _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 2PR _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 HOH 1 101 84 HOH HOH A . I 2 HOH 2 102 22 HOH HOH A . I 2 HOH 3 103 11 HOH HOH A . I 2 HOH 4 104 71 HOH HOH A . I 2 HOH 5 105 59 HOH HOH A . I 2 HOH 6 106 1 HOH HOH A . I 2 HOH 7 107 25 HOH HOH A . I 2 HOH 8 108 86 HOH HOH A . J 2 HOH 1 101 28 HOH HOH B . J 2 HOH 2 102 44 HOH HOH B . J 2 HOH 3 103 47 HOH HOH B . J 2 HOH 4 104 26 HOH HOH B . J 2 HOH 5 105 58 HOH HOH B . J 2 HOH 6 106 9 HOH HOH B . J 2 HOH 7 107 30 HOH HOH B . J 2 HOH 8 108 48 HOH HOH B . J 2 HOH 9 109 3 HOH HOH B . J 2 HOH 10 110 41 HOH HOH B . J 2 HOH 11 111 73 HOH HOH B . J 2 HOH 12 112 60 HOH HOH B . J 2 HOH 13 113 79 HOH HOH B . J 2 HOH 14 114 45 HOH HOH B . J 2 HOH 15 115 82 HOH HOH B . J 2 HOH 16 116 74 HOH HOH B . J 2 HOH 17 117 55 HOH HOH B . J 2 HOH 18 118 83 HOH HOH B . J 2 HOH 19 119 78 HOH HOH B . J 2 HOH 20 120 85 HOH HOH B . K 2 HOH 1 101 40 HOH HOH C . K 2 HOH 2 102 76 HOH HOH C . K 2 HOH 3 103 54 HOH HOH C . K 2 HOH 4 104 65 HOH HOH C . K 2 HOH 5 105 14 HOH HOH C . K 2 HOH 6 106 68 HOH HOH C . K 2 HOH 7 107 12 HOH HOH C . K 2 HOH 8 108 18 HOH HOH C . K 2 HOH 9 109 8 HOH HOH C . K 2 HOH 10 110 10 HOH HOH C . K 2 HOH 11 111 88 HOH HOH C . K 2 HOH 12 112 16 HOH HOH C . K 2 HOH 13 113 72 HOH HOH C . K 2 HOH 14 114 29 HOH HOH C . K 2 HOH 15 115 92 HOH HOH C . L 2 HOH 1 101 57 HOH HOH D . L 2 HOH 2 102 43 HOH HOH D . L 2 HOH 3 103 17 HOH HOH D . L 2 HOH 4 104 46 HOH HOH D . L 2 HOH 5 105 53 HOH HOH D . L 2 HOH 6 106 61 HOH HOH D . L 2 HOH 7 107 49 HOH HOH D . L 2 HOH 8 108 64 HOH HOH D . L 2 HOH 9 109 23 HOH HOH D . L 2 HOH 10 110 77 HOH HOH D . L 2 HOH 11 111 33 HOH HOH D . M 2 HOH 1 101 70 HOH HOH E . M 2 HOH 2 102 38 HOH HOH E . M 2 HOH 3 103 31 HOH HOH E . M 2 HOH 4 104 20 HOH HOH E . M 2 HOH 5 105 35 HOH HOH E . M 2 HOH 6 106 69 HOH HOH E . M 2 HOH 7 107 15 HOH HOH E . M 2 HOH 8 108 24 HOH HOH E . M 2 HOH 9 109 63 HOH HOH E . M 2 HOH 10 110 81 HOH HOH E . M 2 HOH 11 111 97 HOH HOH E . M 2 HOH 12 112 96 HOH HOH E . N 2 HOH 1 101 21 HOH HOH F . N 2 HOH 2 102 52 HOH HOH F . N 2 HOH 3 103 39 HOH HOH F . N 2 HOH 4 104 91 HOH HOH F . N 2 HOH 5 105 90 HOH HOH F . N 2 HOH 6 106 37 HOH HOH F . N 2 HOH 7 107 5 HOH HOH F . N 2 HOH 8 108 51 HOH HOH F . N 2 HOH 9 109 13 HOH HOH F . N 2 HOH 10 110 2 HOH HOH F . N 2 HOH 11 111 27 HOH HOH F . N 2 HOH 12 112 7 HOH HOH F . N 2 HOH 13 113 62 HOH HOH F . N 2 HOH 14 114 89 HOH HOH F . O 2 HOH 1 101 6 HOH HOH G . O 2 HOH 2 102 42 HOH HOH G . O 2 HOH 3 103 50 HOH HOH G . O 2 HOH 4 104 4 HOH HOH G . O 2 HOH 5 105 19 HOH HOH G . O 2 HOH 6 106 80 HOH HOH G . O 2 HOH 7 107 75 HOH HOH G . O 2 HOH 8 108 36 HOH HOH G . O 2 HOH 9 109 95 HOH HOH G . O 2 HOH 10 110 94 HOH HOH G . P 2 HOH 1 101 34 HOH HOH H . P 2 HOH 2 102 32 HOH HOH H . P 2 HOH 3 103 67 HOH HOH H . P 2 HOH 4 104 98 HOH HOH H . P 2 HOH 5 105 93 HOH HOH H . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . ? 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . ? 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . ? 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.20.1_4487: ???)' ? 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? . ? 5 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 25LU _cell.details ? _cell.formula_units_Z ? _cell.length_a 93.154 _cell.length_a_esd ? _cell.length_b 93.154 _cell.length_b_esd ? _cell.length_c 25.277 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 32 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 25LU _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 25LU _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 39.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'lithium nitrate, MPD, spermine, MOPS' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293.15 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2025-06-21 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 25LU _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 31.1 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15171 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.6 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.00 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.06 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 2.00 2.05 ? ? ? ? ? ? 1102 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.356 ? ? 1 1 0.95 ? ? ? ? 0.328 ? ? ? ? ? ? ? ? ? 2.05 2.11 ? ? ? ? ? ? 1100 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.298 ? ? 2 1 0.962 ? ? ? ? 0.274 ? ? ? ? ? ? ? ? ? 2.11 2.17 ? ? ? ? ? ? 1022 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.236 ? ? 3 1 0.974 ? ? ? ? 0.217 ? ? ? ? ? ? ? ? ? 2.17 2.24 ? ? ? ? ? ? 1028 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.182 ? ? 4 1 0.985 ? ? ? ? 0.167 ? ? ? ? ? ? ? ? ? 2.24 2.31 ? ? ? ? ? ? 1005 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.164 ? ? 5 1 0.986 ? ? ? ? 0.152 ? ? ? ? ? ? ? ? ? 2.31 2.39 ? ? ? ? ? ? 932 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.133 ? ? 6 1 0.992 ? ? ? ? 0.123 ? ? ? ? ? ? ? ? ? 2.39 2.48 ? ? ? ? ? ? 930 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.11 ? ? 7 1 0.993 ? ? ? ? 0.102 ? ? ? ? ? ? ? ? ? 2.48 2.58 ? ? ? ? ? ? 901 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.091 ? ? 8 1 0.995 ? ? ? ? 0.084 ? ? ? ? ? ? ? ? ? 2.58 2.7 ? ? ? ? ? ? 836 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.081 ? ? 9 1 0.995 ? ? ? ? 0.075 ? ? ? ? ? ? ? ? ? 2.70 2.83 ? ? ? ? ? ? 843 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.071 ? ? 10 1 0.997 ? ? ? ? 0.066 ? ? ? ? ? ? ? ? ? 2.83 2.98 ? ? ? ? ? ? 766 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.063 ? ? 11 1 0.998 ? ? ? ? 0.058 ? ? ? ? ? ? ? ? ? 2.98 3.16 ? ? ? ? ? ? 756 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.055 ? ? 12 1 0.998 ? ? ? ? 0.051 ? ? ? ? ? ? ? ? ? 3.16 3.38 ? ? ? ? ? ? 688 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.053 ? ? 13 1 0.998 ? ? ? ? 0.049 ? ? ? ? ? ? ? ? ? 3.38 3.65 ? ? ? ? ? ? 676 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.053 ? ? 14 1 0.998 ? ? ? ? 0.049 ? ? ? ? ? ? ? ? ? 3.65 4.0 ? ? ? ? ? ? 592 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.052 ? ? 15 1 0.998 ? ? ? ? 0.048 ? ? ? ? ? ? ? ? ? 4.00 4.48 ? ? ? ? ? ? 550 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.053 ? ? 16 1 0.998 ? ? ? ? 0.048 ? ? ? ? ? ? ? ? ? 4.48 5.17 ? ? ? ? ? ? 497 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.053 ? ? 17 1 0.997 ? ? ? ? 0.049 ? ? ? ? ? ? ? ? ? 5.17 6.33 ? ? ? ? ? ? 426 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.051 ? ? 18 1 0.997 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? ? 6.33 8.95 ? ? ? ? ? ? 326 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.052 ? ? 19 1 0.998 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? ? 8.95 31.1 ? ? ? ? ? ? 195 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.056 ? ? 20 1 0.996 ? ? ? ? 0.05 ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 25LU _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.00 _refine.ls_d_res_low 31.05 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15162 _refine.ls_number_reflns_R_free 1505 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.91 _refine.ls_percent_reflns_R_free 9.93 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2218 _refine.ls_R_factor_R_free 0.2628 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2173 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 31.58 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.34 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 31.05 _refine_hist.number_atoms_solvent 95 _refine_hist.number_atoms_total 1871 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1776 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 ? 1984 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 1.354 ? 3048 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 19.987 ? 936 ? f_dihedral_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.132 ? 336 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 128 ? f_plane_restr ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.00 2.07 . . 134 1228 100.00 . . . . 0.2929 . . . . . . . . . . . . . . . 0.3889 'X-RAY DIFFRACTION' 2.07 2.14 . . 133 1226 100.00 . . . . 0.2819 . . . . . . . . . . . . . . . 0.3750 'X-RAY DIFFRACTION' 2.14 2.23 . . 132 1210 100.00 . . . . 0.2820 . . . . . . . . . . . . . . . 0.3404 'X-RAY DIFFRACTION' 2.23 2.33 . . 134 1222 100.00 . . . . 0.2837 . . . . . . . . . . . . . . . 0.3440 'X-RAY DIFFRACTION' 2.33 2.45 . . 133 1243 100.00 . . . . 0.2863 . . . . . . . . . . . . . . . 0.3488 'X-RAY DIFFRACTION' 2.45 2.60 . . 137 1227 100.00 . . . . 0.2665 . . . . . . . . . . . . . . . 0.3425 'X-RAY DIFFRACTION' 2.60 2.80 . . 141 1252 100.00 . . . . 0.2734 . . . . . . . . . . . . . . . 0.3514 'X-RAY DIFFRACTION' 2.80 3.08 . . 140 1221 100.00 . . . . 0.2575 . . . . . . . . . . . . . . . 0.3632 'X-RAY DIFFRACTION' 3.09 3.53 . . 144 1247 100.00 . . . . 0.2066 . . . . . . . . . . . . . . . 0.2170 'X-RAY DIFFRACTION' 3.53 4.44 . . 133 1261 100.00 . . . . 0.1756 . . . . . . . . . . . . . . . 0.2016 'X-RAY DIFFRACTION' 4.45 31.05 . . 144 1320 99.00 . . . . 0.1692 . . . . . . . . . . . . . . . 0.2049 # _struct.entry_id 25LU _struct.title 'Mercury-detecting DNA probe in the absence of mercury ion' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 25LU _struct_keywords.text 'Mercury-detecting, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 25LU _struct_ref.pdbx_db_accession 25LU _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 25LU A 1 ? 11 ? 25LU 1 ? 11 ? 1 11 2 1 25LU B 1 ? 11 ? 25LU 1 ? 11 ? 1 11 3 1 25LU C 1 ? 11 ? 25LU 1 ? 11 ? 1 11 4 1 25LU D 1 ? 11 ? 25LU 1 ? 11 ? 1 11 5 1 25LU E 1 ? 11 ? 25LU 1 ? 11 ? 1 11 6 1 25LU F 1 ? 11 ? 25LU 1 ? 11 ? 1 11 7 1 25LU G 1 ? 11 ? 25LU 1 ? 11 ? 1 11 8 1 25LU H 1 ? 11 ? 25LU 1 ? 11 ? 1 11 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 author_and_software_defined_assembly PISA dimeric 2 4 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2500 ? 1 MORE 1 ? 1 'SSA (A^2)' 3800 ? 2 'ABSA (A^2)' 2210 ? 2 MORE 3 ? 2 'SSA (A^2)' 4110 ? 3 'ABSA (A^2)' 2230 ? 3 MORE 2 ? 3 'SSA (A^2)' 4050 ? 4 'ABSA (A^2)' 2220 ? 4 MORE 3 ? 4 'SSA (A^2)' 4060 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,I,J 2 1 C,D,K,L 3 1 E,F,M,N 4 1 G,H,O,P # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 7 "O3'" ? ? ? 1_555 A 2PR 8 P ? ? A DT 7 A 2PR 8 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale2 covale both ? A 2PR 8 "O3'" ? ? ? 1_555 A DC 9 P ? ? A 2PR 8 A DC 9 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale3 covale both ? B DT 7 "O3'" ? ? ? 1_555 B 2PR 8 P ? ? B DT 7 B 2PR 8 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale4 covale both ? B 2PR 8 "O3'" ? ? ? 1_555 B DC 9 P ? ? B 2PR 8 B DC 9 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale5 covale both ? C DT 7 "O3'" ? ? ? 1_555 C 2PR 8 P ? ? C DT 7 C 2PR 8 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale6 covale both ? C 2PR 8 "O3'" ? ? ? 1_555 C DC 9 P ? ? C 2PR 8 C DC 9 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale7 covale both ? D DT 7 "O3'" ? ? ? 1_555 D 2PR 8 P ? ? D DT 7 D 2PR 8 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale8 covale both ? D 2PR 8 "O3'" ? ? ? 1_555 D DC 9 P ? ? D 2PR 8 D DC 9 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale9 covale both ? E DT 7 "O3'" ? ? ? 1_555 E 2PR 8 P ? ? E DT 7 E 2PR 8 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale10 covale both ? E 2PR 8 "O3'" ? ? ? 1_555 E DC 9 P ? ? E 2PR 8 E DC 9 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale11 covale both ? F DT 7 "O3'" ? ? ? 1_555 F 2PR 8 P ? ? F DT 7 F 2PR 8 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale12 covale both ? F 2PR 8 "O3'" ? ? ? 1_555 F DC 9 P ? ? F 2PR 8 F DC 9 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale13 covale both ? G DT 7 "O3'" ? ? ? 1_555 G 2PR 8 P ? ? G DT 7 G 2PR 8 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale14 covale both ? G 2PR 8 "O3'" ? ? ? 1_555 G DC 9 P ? ? G 2PR 8 G DC 9 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale15 covale both ? H DT 7 "O3'" ? ? ? 1_555 H 2PR 8 P ? ? H DT 7 H 2PR 8 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale16 covale both ? H 2PR 8 "O3'" ? ? ? 1_555 H DC 9 P ? ? H 2PR 8 H DC 9 1_555 ? ? ? ? ? ? ? 1.604 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 1 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 1 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 1 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 1 N2 ? ? ? 1_555 G DG 5 N3 ? ? A DG 1 G DG 5 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog5 hydrog ? ? A DG 1 N3 ? ? ? 1_555 G DG 5 N2 ? ? A DG 1 G DG 5 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 2 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 2 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 2 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 3 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 3 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 3 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 4 O2 ? ? ? 1_555 B 2PR 8 N2 ? ? A DT 4 B 2PR 8 1_555 ? ? ? ? ? ? 'DT-2PR MISPAIR' ? ? ? hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 6 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 6 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 6 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A 2PR 8 N2 ? ? ? 1_555 B DT 4 O2 ? ? A 2PR 8 B DT 4 1_555 ? ? ? ? ? ? '2PR-DT MISPAIR' ? ? ? hydrog20 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 9 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 9 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 9 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 10 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 10 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 10 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 11 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 11 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 11 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DC 11 O2 ? ? ? 1_555 H 2PR 8 N2 ? ? B DC 11 H 2PR 8 1_555 ? ? ? ? ? ? 'DC-2PR MISPAIR' ? ? ? hydrog30 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DC 11 N3 ? ? C DG 1 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DC 11 O2 ? ? C DG 1 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DG 1 O6 ? ? ? 1_555 D DC 11 N4 ? ? C DG 1 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 10 N3 ? ? C DG 2 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 10 O2 ? ? C DG 2 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 10 N4 ? ? C DG 2 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DG 3 N1 ? ? ? 1_555 D DC 9 N3 ? ? C DG 3 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DG 3 N2 ? ? ? 1_555 D DC 9 O2 ? ? C DG 3 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DC 9 N4 ? ? C DG 3 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DT 4 O2 ? ? ? 1_555 D 2PR 8 N2 ? ? C DT 4 D 2PR 8 1_555 ? ? ? ? ? ? 'DT-2PR MISPAIR' ? ? ? hydrog40 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DC 6 N3 ? ? C DG 5 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DC 6 O2 ? ? C DG 5 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DC 6 N4 ? ? C DG 5 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 5 N1 ? ? C DC 6 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 5 O6 ? ? C DC 6 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 5 N2 ? ? C DC 6 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C 2PR 8 N2 ? ? ? 1_555 D DT 4 O2 ? ? C 2PR 8 D DT 4 1_555 ? ? ? ? ? ? '2PR-DT MISPAIR' ? ? ? hydrog47 hydrog ? ? C DC 9 N3 ? ? ? 1_555 D DG 3 N1 ? ? C DC 9 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DC 9 N4 ? ? ? 1_555 D DG 3 O6 ? ? C DC 9 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DC 9 O2 ? ? ? 1_555 D DG 3 N2 ? ? C DC 9 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DC 10 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 10 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DC 10 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 10 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DC 10 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 10 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C DC 11 N3 ? ? ? 1_555 D DG 1 N1 ? ? C DC 11 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DC 11 N4 ? ? ? 1_555 D DG 1 O6 ? ? C DC 11 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C DC 11 O2 ? ? ? 1_555 D DG 1 N2 ? ? C DC 11 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? E DG 1 N1 ? ? ? 1_555 F DC 11 N3 ? ? E DG 1 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E DG 1 N2 ? ? ? 1_555 F DC 11 O2 ? ? E DG 1 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? E DG 1 O6 ? ? ? 1_555 F DC 11 N4 ? ? E DG 1 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? E DG 2 N1 ? ? ? 1_555 F DC 10 N3 ? ? E DG 2 F DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E DG 2 N2 ? ? ? 1_555 F DC 10 O2 ? ? E DG 2 F DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? E DG 2 O6 ? ? ? 1_555 F DC 10 N4 ? ? E DG 2 F DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? E DG 3 N1 ? ? ? 1_555 F DC 9 N3 ? ? E DG 3 F DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? E DG 3 N2 ? ? ? 1_555 F DC 9 O2 ? ? E DG 3 F DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? E DG 3 O6 ? ? ? 1_555 F DC 9 N4 ? ? E DG 3 F DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? E DT 4 O2 ? ? ? 1_555 F 2PR 8 N2 ? ? E DT 4 F 2PR 8 1_555 ? ? ? ? ? ? 'DT-2PR MISPAIR' ? ? ? hydrog66 hydrog ? ? E DG 5 N1 ? ? ? 1_555 F DC 6 N3 ? ? E DG 5 F DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? E DG 5 N2 ? ? ? 1_555 F DC 6 O2 ? ? E DG 5 F DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? E DG 5 O6 ? ? ? 1_555 F DC 6 N4 ? ? E DG 5 F DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? E DC 6 N3 ? ? ? 1_555 F DG 5 N1 ? ? E DC 6 F DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? E DC 6 N4 ? ? ? 1_555 F DG 5 O6 ? ? E DC 6 F DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? E DC 6 O2 ? ? ? 1_555 F DG 5 N2 ? ? E DC 6 F DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? E 2PR 8 N2 ? ? ? 1_555 F DT 4 O2 ? ? E 2PR 8 F DT 4 1_555 ? ? ? ? ? ? '2PR-DT MISPAIR' ? ? ? hydrog73 hydrog ? ? E DC 9 N3 ? ? ? 1_555 F DG 3 N2 ? ? E DC 9 F DG 3 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog74 hydrog ? ? E DC 9 O2 ? ? ? 1_555 F DG 3 N1 ? ? E DC 9 F DG 3 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog75 hydrog ? ? E DC 10 N3 ? ? ? 1_555 F DG 2 N1 ? ? E DC 10 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? E DC 10 N4 ? ? ? 1_555 F DG 2 O6 ? ? E DC 10 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? E DC 10 O2 ? ? ? 1_555 F DG 2 N2 ? ? E DC 10 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? E DC 11 N3 ? ? ? 1_555 F DG 1 N1 ? ? E DC 11 F DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? E DC 11 N4 ? ? ? 1_555 F DG 1 O6 ? ? E DC 11 F DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? E DC 11 O2 ? ? ? 1_555 F DG 1 N2 ? ? E DC 11 F DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? G DG 1 N1 ? ? ? 1_555 H DC 11 N3 ? ? G DG 1 H DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? G DG 1 N2 ? ? ? 1_555 H DC 11 O2 ? ? G DG 1 H DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? G DG 1 O6 ? ? ? 1_555 H DC 11 N4 ? ? G DG 1 H DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? G DG 2 N1 ? ? ? 1_555 H DC 10 N3 ? ? G DG 2 H DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? G DG 2 N2 ? ? ? 1_555 H DC 10 O2 ? ? G DG 2 H DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? G DG 2 O6 ? ? ? 1_555 H DC 10 N4 ? ? G DG 2 H DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? G DG 3 N1 ? ? ? 1_555 H DC 9 N3 ? ? G DG 3 H DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? G DG 3 N2 ? ? ? 1_555 H DC 9 O2 ? ? G DG 3 H DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? G DG 3 O6 ? ? ? 1_555 H DC 9 N4 ? ? G DG 3 H DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? G DT 4 O2 ? ? ? 1_555 H 2PR 8 N2 ? ? G DT 4 H 2PR 8 1_555 ? ? ? ? ? ? 'DT-2PR MISPAIR' ? ? ? hydrog91 hydrog ? ? G DG 5 N1 ? ? ? 1_555 H DC 6 N3 ? ? G DG 5 H DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? G DG 5 N2 ? ? ? 1_555 H DC 6 O2 ? ? G DG 5 H DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? G DG 5 O6 ? ? ? 1_555 H DC 6 N4 ? ? G DG 5 H DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? G DC 6 N3 ? ? ? 1_555 H DG 5 N1 ? ? G DC 6 H DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? G DC 6 N4 ? ? ? 1_555 H DG 5 O6 ? ? G DC 6 H DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? G DC 6 O2 ? ? ? 1_555 H DG 5 N2 ? ? G DC 6 H DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? G 2PR 8 N1 ? ? ? 1_555 H DT 4 O4 ? ? G 2PR 8 H DT 4 1_555 ? ? ? ? ? ? '2PR-DT MISPAIR' ? ? ? hydrog98 hydrog ? ? G DC 9 N3 ? ? ? 1_555 H DG 3 N1 ? ? G DC 9 H DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? G DC 9 N4 ? ? ? 1_555 H DG 3 O6 ? ? G DC 9 H DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? G DC 9 O2 ? ? ? 1_555 H DG 3 N2 ? ? G DC 9 H DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? G DC 10 N3 ? ? ? 1_555 H DG 2 N1 ? ? G DC 10 H DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? G DC 10 N4 ? ? ? 1_555 H DG 2 O6 ? ? G DC 10 H DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? G DC 10 O2 ? ? ? 1_555 H DG 2 N2 ? ? G DC 10 H DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? G DC 11 N3 ? ? ? 1_555 H DG 1 N1 ? ? G DC 11 H DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? G DC 11 N4 ? ? ? 1_555 H DG 1 O6 ? ? G DC 11 H DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? G DC 11 O2 ? ? ? 1_555 H DG 1 N2 ? ? G DC 11 H DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_entry_details.entry_id 25LU _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" C DT 7 ? ? "C3'" C DT 7 ? ? 1.380 1.419 -0.039 0.006 N 2 1 "O3'" D DT 7 ? ? "C3'" D DT 7 ? ? 1.378 1.419 -0.041 0.006 N 3 1 "O3'" F DT 7 ? ? "C3'" F DT 7 ? ? 1.373 1.419 -0.046 0.006 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2PR OP3 O N N 1 2PR P P N N 2 2PR OP1 O N N 3 2PR OP2 O N N 4 2PR "O5'" O N N 5 2PR "C5'" C N N 6 2PR "C4'" C N R 7 2PR "O4'" O N N 8 2PR "C3'" C N S 9 2PR "O3'" O N N 10 2PR "C2'" C N N 11 2PR "C1'" C N R 12 2PR N9 N Y N 13 2PR C8 C Y N 14 2PR N7 N Y N 15 2PR C5 C Y N 16 2PR C6 C Y N 17 2PR N1 N Y N 18 2PR C2 C Y N 19 2PR N2 N N N 20 2PR N3 N Y N 21 2PR C4 C Y N 22 2PR HOP3 H N N 23 2PR HOP2 H N N 24 2PR "H5'" H N N 25 2PR "H5''" H N N 26 2PR "H4'" H N N 27 2PR "H3'" H N N 28 2PR "HO3'" H N N 29 2PR "H2'" H N N 30 2PR "H2''" H N N 31 2PR "H1'" H N N 32 2PR H8 H N N 33 2PR H6 H N N 34 2PR HN21 H N N 35 2PR HN22 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2PR OP3 P sing N N 1 2PR OP3 HOP3 sing N N 2 2PR P OP1 doub N N 3 2PR P OP2 sing N N 4 2PR P "O5'" sing N N 5 2PR OP2 HOP2 sing N N 6 2PR "O5'" "C5'" sing N N 7 2PR "C5'" "C4'" sing N N 8 2PR "C5'" "H5'" sing N N 9 2PR "C5'" "H5''" sing N N 10 2PR "C4'" "O4'" sing N N 11 2PR "C4'" "C3'" sing N N 12 2PR "C4'" "H4'" sing N N 13 2PR "O4'" "C1'" sing N N 14 2PR "C3'" "O3'" sing N N 15 2PR "C3'" "C2'" sing N N 16 2PR "C3'" "H3'" sing N N 17 2PR "O3'" "HO3'" sing N N 18 2PR "C2'" "C1'" sing N N 19 2PR "C2'" "H2'" sing N N 20 2PR "C2'" "H2''" sing N N 21 2PR "C1'" N9 sing N N 22 2PR "C1'" "H1'" sing N N 23 2PR N9 C8 sing Y N 24 2PR N9 C4 sing Y N 25 2PR C8 N7 doub Y N 26 2PR C8 H8 sing N N 27 2PR N7 C5 sing Y N 28 2PR C5 C6 sing Y N 29 2PR C5 C4 doub Y N 30 2PR C6 N1 doub Y N 31 2PR C6 H6 sing N N 32 2PR N1 C2 sing Y N 33 2PR C2 N2 sing N N 34 2PR C2 N3 doub Y N 35 2PR N2 HN21 sing N N 36 2PR N2 HN22 sing N N 37 2PR N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 25LU 'double helix' 25LU 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 11 1_555 -0.354 -0.262 0.054 -5.165 10.187 2.097 1 A_DG1:DC11_B A 1 ? B 11 ? 19 1 1 A DG 2 1_555 B DC 10 1_555 -0.312 -0.182 -0.244 -5.601 -6.790 5.922 2 A_DG2:DC10_B A 2 ? B 10 ? 19 1 1 A DG 3 1_555 B DC 9 1_555 -0.402 -0.151 -0.050 -0.236 -5.337 2.696 3 A_DG3:DC9_B A 3 ? B 9 ? 19 1 1 A DT 4 1_555 B 2PR 8 1_555 -0.215 -0.424 0.058 -1.672 -9.740 -6.695 4 A_DT4:2PR8_B A 4 ? B 8 ? ? 1 1 A DG 5 1_555 B DC 6 1_555 -0.372 -0.345 0.216 -8.184 -14.976 -0.094 5 A_DG5:DC6_B A 5 ? B 6 ? 19 1 1 A DC 6 1_555 B DG 5 1_555 0.530 -0.474 0.376 -0.472 -13.162 -4.945 6 A_DC6:DG5_B A 6 ? B 5 ? 19 1 1 A 2PR 8 1_555 B DT 4 1_555 0.341 -0.158 -0.164 9.078 -3.325 2.008 7 A_2PR8:DT4_B A 8 ? B 4 ? ? 1 1 A DC 9 1_555 B DG 3 1_555 0.425 -0.238 0.257 5.525 -12.709 3.558 8 A_DC9:DG3_B A 9 ? B 3 ? 19 1 1 A DC 10 1_555 B DG 2 1_555 0.553 -0.181 0.105 4.244 -16.378 4.781 9 A_DC10:DG2_B A 10 ? B 2 ? 19 1 1 A DC 11 1_555 B DG 1 1_555 0.414 -0.250 -0.241 3.468 -0.692 -0.581 10 A_DC11:DG1_B A 11 ? B 1 ? 19 1 1 C DG 1 1_555 D DC 11 1_555 -0.341 -0.204 -0.038 -6.570 5.388 1.077 11 C_DG1:DC11_D C 1 ? D 11 ? 19 1 1 C DG 2 1_555 D DC 10 1_555 -0.303 -0.136 0.062 -3.145 -8.746 1.958 12 C_DG2:DC10_D C 2 ? D 10 ? 19 1 1 C DG 3 1_555 D DC 9 1_555 -0.418 -0.144 0.041 -5.431 -6.696 1.574 13 C_DG3:DC9_D C 3 ? D 9 ? 19 1 1 C DT 4 1_555 D 2PR 8 1_555 0.044 -0.423 -0.119 4.322 -7.366 -3.596 14 C_DT4:2PR8_D C 4 ? D 8 ? ? 1 1 C DG 5 1_555 D DC 6 1_555 -0.263 -0.146 0.111 -8.688 -1.805 2.420 15 C_DG5:DC6_D C 5 ? D 6 ? 19 1 1 C DC 6 1_555 D DG 5 1_555 0.391 -0.174 0.190 -0.281 -6.791 7.276 16 C_DC6:DG5_D C 6 ? D 5 ? 19 1 1 C 2PR 8 1_555 D DT 4 1_555 -0.019 -0.298 0.312 14.502 -6.883 -2.763 17 C_2PR8:DT4_D C 8 ? D 4 ? ? 1 1 C DC 9 1_555 D DG 3 1_555 0.212 -0.319 -0.317 7.939 -15.304 1.823 18 C_DC9:DG3_D C 9 ? D 3 ? 19 1 1 C DC 10 1_555 D DG 2 1_555 0.443 -0.138 -0.039 -2.950 -7.302 4.899 19 C_DC10:DG2_D C 10 ? D 2 ? 19 1 1 C DC 11 1_555 D DG 1 1_555 0.325 -0.173 0.017 5.157 -1.926 2.640 20 C_DC11:DG1_D C 11 ? D 1 ? 19 1 1 E DG 1 1_555 F DC 11 1_555 -0.061 -0.110 -0.361 -4.784 9.138 0.119 21 E_DG1:DC11_F E 1 ? F 11 ? 19 1 1 E DG 2 1_555 F DC 10 1_555 -0.240 -0.347 -0.186 -2.529 -7.974 0.769 22 E_DG2:DC10_F E 2 ? F 10 ? 19 1 1 E DG 3 1_555 F DC 9 1_555 -0.374 -0.234 -0.196 -11.968 -11.081 1.862 23 E_DG3:DC9_F E 3 ? F 9 ? 19 1 1 E DT 4 1_555 F 2PR 8 1_555 -0.100 -0.247 -0.069 -6.679 -0.974 -4.863 24 E_DT4:2PR8_F E 4 ? F 8 ? ? 1 1 E DG 5 1_555 F DC 6 1_555 -0.195 -0.267 -0.129 2.190 -3.408 -1.407 25 E_DG5:DC6_F E 5 ? F 6 ? 19 1 1 E DC 6 1_555 F DG 5 1_555 0.054 -0.177 -0.269 9.129 -12.114 2.994 26 E_DC6:DG5_F E 6 ? F 5 ? 19 1 1 E 2PR 8 1_555 F DT 4 1_555 0.126 -0.675 -0.118 1.077 -13.524 -11.380 27 E_2PR8:DT4_F E 8 ? F 4 ? ? 1 1 E DC 9 1_555 F DG 3 1_555 0.226 -0.745 -0.369 11.582 -17.343 -4.385 28 E_DC9:DG3_F E 9 ? F 3 ? 22 1 1 E DC 10 1_555 F DG 2 1_555 0.306 -0.494 -0.099 3.423 -10.824 0.324 29 E_DC10:DG2_F E 10 ? F 2 ? 19 1 1 E DC 11 1_555 F DG 1 1_555 0.458 -0.135 0.071 5.885 -9.369 1.206 30 E_DC11:DG1_F E 11 ? F 1 ? 19 1 1 G DG 1 1_555 H DC 11 1_555 -0.138 -0.294 0.103 -5.465 3.189 -1.352 31 G_DG1:DC11_H G 1 ? H 11 ? 19 1 1 G DG 2 1_555 H DC 10 1_555 -0.204 -0.325 0.113 -0.675 -11.303 2.458 32 G_DG2:DC10_H G 2 ? H 10 ? 19 1 1 G DG 3 1_555 H DC 9 1_555 -0.202 -0.303 0.055 -5.516 -9.244 1.319 33 G_DG3:DC9_H G 3 ? H 9 ? 19 1 1 G DT 4 1_555 H 2PR 8 1_555 0.404 -0.479 0.375 -6.088 -6.717 -4.842 34 G_DT4:2PR8_H G 4 ? H 8 ? ? 1 1 G DG 5 1_555 H DC 6 1_555 -0.382 -0.354 0.083 -12.796 -5.452 -2.361 35 G_DG5:DC6_H G 5 ? H 6 ? 19 1 1 G DC 6 1_555 H DG 5 1_555 0.231 -0.350 -0.089 3.828 -8.756 1.466 36 G_DC6:DG5_H G 6 ? H 5 ? 19 1 1 G 2PR 8 1_555 H DT 4 1_555 0.259 -0.317 -0.102 4.255 -18.027 -16.159 37 G_2PR8:DT4_H G 8 ? H 4 ? ? 1 1 G DC 9 1_555 H DG 3 1_555 0.598 -0.460 0.003 -1.154 -12.801 -1.760 38 G_DC9:DG3_H G 9 ? H 3 ? 19 1 1 G DC 10 1_555 H DG 2 1_555 0.259 -0.260 0.060 -2.161 -1.872 -3.842 39 G_DC10:DG2_H G 10 ? H 2 ? 19 1 1 G DC 11 1_555 H DG 1 1_555 1.550 -0.178 -0.143 10.421 -3.471 12.600 40 G_DC11:DG1_H G 11 ? H 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 11 1_555 A DG 2 1_555 B DC 10 1_555 -0.057 -2.107 3.371 0.222 8.370 30.847 -5.269 0.142 2.720 15.384 -0.409 31.937 1 AA_DG1DG2:DC10DC11_BB A 1 ? B 11 ? A 2 ? B 10 ? 1 A DG 2 1_555 B DC 10 1_555 A DG 3 1_555 B DC 9 1_555 0.130 -2.165 3.063 -3.166 7.100 22.076 -7.352 -1.219 2.227 17.845 7.957 23.389 2 AA_DG2DG3:DC9DC10_BB A 2 ? B 10 ? A 3 ? B 9 ? 1 A DG 3 1_555 B DC 9 1_555 A DT 4 1_555 B 2PR 8 1_555 -0.339 -2.388 3.273 -1.347 4.221 36.714 -4.312 0.359 3.000 6.671 2.130 36.972 3 AA_DG3DT4:2PR8DC9_BB A 3 ? B 9 ? A 4 ? B 8 ? 1 A DT 4 1_555 B 2PR 8 1_555 A DG 5 1_555 B DC 6 1_555 0.191 -2.076 3.186 -1.246 12.394 26.690 -6.316 -0.600 2.030 25.178 2.532 29.406 4 AA_DT4DG5:DC62PR8_BB A 4 ? B 8 ? A 5 ? B 6 ? 1 A DG 5 1_555 B DC 6 1_555 A DC 6 1_555 B DG 5 1_555 0.071 -1.441 3.063 -0.588 6.209 39.197 -2.778 -0.167 2.810 9.184 0.870 39.671 5 AA_DG5DC6:DG5DC6_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A DC 6 1_555 B DG 5 1_555 A 2PR 8 1_555 B DT 4 1_555 -0.856 -1.910 2.837 3.330 20.994 26.131 -5.577 1.843 0.964 39.205 -6.219 33.567 6 AA_DC62PR8:DT4DG5_BB A 6 ? B 5 ? A 8 ? B 4 ? 1 A 2PR 8 1_555 B DT 4 1_555 A DC 9 1_555 B DG 3 1_555 0.919 -1.362 3.405 -3.027 1.614 31.092 -2.836 -2.288 3.230 3.000 5.626 31.276 7 AA_2PR8DC9:DG3DT4_BB A 8 ? B 4 ? A 9 ? B 3 ? 1 A DC 9 1_555 B DG 3 1_555 A DC 10 1_555 B DG 2 1_555 -0.141 -1.681 3.204 -0.170 3.368 30.638 -3.788 0.233 3.007 6.350 0.320 30.818 8 AA_DC9DC10:DG2DG3_BB A 9 ? B 3 ? A 10 ? B 2 ? 1 A DC 10 1_555 B DG 2 1_555 A DC 11 1_555 B DG 1 1_555 -0.513 -1.681 3.240 2.216 6.676 34.736 -3.684 1.149 2.841 11.043 -3.665 35.420 9 AA_DC10DC11:DG1DG2_BB A 10 ? B 2 ? A 11 ? B 1 ? 1 C DG 1 1_555 D DC 11 1_555 C DG 2 1_555 D DC 10 1_555 -0.120 -1.748 3.267 -0.107 4.931 33.779 -3.731 0.189 2.990 8.431 0.182 34.127 10 CC_DG1DG2:DC10DC11_DD C 1 ? D 11 ? C 2 ? D 10 ? 1 C DG 2 1_555 D DC 10 1_555 C DG 3 1_555 D DC 9 1_555 1.096 -2.092 3.153 2.914 5.549 25.761 -5.909 -1.685 2.754 12.217 -6.416 26.500 11 CC_DG2DG3:DC9DC10_DD C 2 ? D 10 ? C 3 ? D 9 ? 1 C DG 3 1_555 D DC 9 1_555 C DT 4 1_555 D 2PR 8 1_555 -0.302 -1.981 3.087 1.678 -0.110 33.413 -3.424 0.785 3.075 -0.191 -2.917 33.454 12 CC_DG3DT4:2PR8DC9_DD C 3 ? D 9 ? C 4 ? D 8 ? 1 C DT 4 1_555 D 2PR 8 1_555 C DG 5 1_555 D DC 6 1_555 -1.523 -2.464 3.514 -6.780 7.084 23.103 -7.838 1.439 2.961 16.753 16.034 25.072 13 CC_DT4DG5:DC62PR8_DD C 4 ? D 8 ? C 5 ? D 6 ? 1 C DG 5 1_555 D DC 6 1_555 C DC 6 1_555 D DG 5 1_555 0.010 -0.449 3.296 -1.914 17.436 30.106 -3.361 -0.304 2.647 30.528 3.351 34.741 14 CC_DG5DC6:DG5DC6_DD C 5 ? D 6 ? C 6 ? D 5 ? 1 C DC 6 1_555 D DG 5 1_555 C 2PR 8 1_555 D DT 4 1_555 0.488 -1.609 2.717 -1.470 13.273 17.921 -7.469 -1.628 1.206 36.705 4.066 22.316 15 CC_DC62PR8:DT4DG5_DD C 6 ? D 5 ? C 8 ? D 4 ? 1 C 2PR 8 1_555 D DT 4 1_555 C DC 9 1_555 D DG 3 1_555 0.292 -2.247 3.355 1.499 4.107 37.560 -3.992 -0.260 3.110 6.352 -2.319 37.805 16 CC_2PR8DC9:DG3DT4_DD C 8 ? D 4 ? C 9 ? D 3 ? 1 C DC 9 1_555 D DG 3 1_555 C DC 10 1_555 D DG 2 1_555 -0.334 -2.198 3.469 -2.431 11.084 30.757 -5.722 0.193 2.562 20.061 4.400 32.736 17 CC_DC9DC10:DG2DG3_DD C 9 ? D 3 ? C 10 ? D 2 ? 1 C DC 10 1_555 D DG 2 1_555 C DC 11 1_555 D DG 1 1_555 0.129 -1.947 3.151 -0.579 4.361 29.559 -4.610 -0.362 2.838 8.487 1.127 29.878 18 CC_DC10DC11:DG1DG2_DD C 10 ? D 2 ? C 11 ? D 1 ? 1 E DG 1 1_555 F DC 11 1_555 E DG 2 1_555 F DC 10 1_555 0.007 -1.987 3.316 -1.133 3.506 27.499 -4.970 -0.280 3.041 7.334 2.370 27.740 19 EE_DG1DG2:DC10DC11_FF E 1 ? F 11 ? E 2 ? F 10 ? 1 E DG 2 1_555 F DC 10 1_555 E DG 3 1_555 F DC 9 1_555 0.541 -2.054 3.399 1.275 8.817 32.092 -5.002 -0.740 2.771 15.578 -2.253 33.274 20 EE_DG2DG3:DC9DC10_FF E 2 ? F 10 ? E 3 ? F 9 ? 1 E DG 3 1_555 F DC 9 1_555 E DT 4 1_555 F 2PR 8 1_555 0.416 -2.382 3.202 3.224 0.564 29.255 -4.806 -0.144 3.183 1.112 -6.358 29.433 21 EE_DG3DT4:2PR8DC9_FF E 3 ? F 9 ? E 4 ? F 8 ? 1 E DT 4 1_555 F 2PR 8 1_555 E DG 5 1_555 F DC 6 1_555 -0.992 -1.895 3.122 1.790 6.399 22.251 -6.619 3.000 2.403 16.125 -4.511 23.210 22 EE_DT4DG5:DC62PR8_FF E 4 ? F 8 ? E 5 ? F 6 ? 1 E DG 5 1_555 F DC 6 1_555 E DC 6 1_555 F DG 5 1_555 0.451 -0.820 3.517 2.491 18.524 31.989 -3.854 -0.368 2.689 30.572 -4.110 36.926 23 EE_DG5DC6:DG5DC6_FF E 5 ? F 6 ? E 6 ? F 5 ? 1 E DC 6 1_555 F DG 5 1_555 E 2PR 8 1_555 F DT 4 1_555 -0.420 -2.074 3.804 -2.098 24.772 17.674 -8.210 0.440 0.581 54.929 4.653 30.422 24 EE_DC62PR8:DT4DG5_FF E 6 ? F 5 ? E 8 ? F 4 ? 1 E 2PR 8 1_555 F DT 4 1_555 E DC 9 1_555 F DG 3 1_555 0.946 -1.064 3.117 5.352 -4.228 41.227 -1.055 -0.772 3.298 -5.956 -7.538 41.763 25 EE_2PR8DC9:DG3DT4_FF E 8 ? F 4 ? E 9 ? F 3 ? 1 E DC 9 1_555 F DG 3 1_555 E DC 10 1_555 F DG 2 1_555 0.183 -1.485 3.559 0.889 8.013 34.815 -3.627 -0.164 3.155 13.174 -1.462 35.708 26 EE_DC9DC10:DG2DG3_FF E 9 ? F 3 ? E 10 ? F 2 ? 1 E DC 10 1_555 F DG 2 1_555 E DC 11 1_555 F DG 1 1_555 -0.707 -1.558 3.282 -3.515 2.645 31.962 -3.273 0.650 3.203 4.775 6.345 32.255 27 EE_DC10DC11:DG1DG2_FF E 10 ? F 2 ? E 11 ? F 1 ? 1 G DG 1 1_555 H DC 11 1_555 G DG 2 1_555 H DC 10 1_555 0.052 -1.656 3.267 0.277 3.435 31.994 -3.585 -0.045 3.077 6.209 -0.501 32.174 28 GG_DG1DG2:DC10DC11_HH G 1 ? H 11 ? G 2 ? H 10 ? 1 G DG 2 1_555 H DC 10 1_555 G DG 3 1_555 H DC 9 1_555 0.800 -1.947 3.292 2.678 5.076 28.175 -5.022 -1.030 2.965 10.291 -5.429 28.741 29 GG_DG2DG3:DC9DC10_HH G 2 ? H 10 ? G 3 ? H 9 ? 1 G DG 3 1_555 H DC 9 1_555 G DT 4 1_555 H 2PR 8 1_555 -0.148 -1.933 3.281 -0.873 -2.470 35.533 -2.793 0.112 3.406 -4.040 1.427 35.626 30 GG_DG3DT4:2PR8DC9_HH G 3 ? H 9 ? G 4 ? H 8 ? 1 G DT 4 1_555 H 2PR 8 1_555 G DG 5 1_555 H DC 6 1_555 -1.556 -2.787 3.210 0.666 6.148 18.748 -10.602 4.809 2.139 18.241 -1.976 19.733 31 GG_DT4DG5:DC62PR8_HH G 4 ? H 8 ? G 5 ? H 6 ? 1 G DG 5 1_555 H DC 6 1_555 G DC 6 1_555 H DG 5 1_555 0.348 -0.520 3.060 0.599 14.388 33.242 -2.682 -0.485 2.626 23.808 -0.990 36.146 32 GG_DG5DC6:DG5DC6_HH G 5 ? H 6 ? G 6 ? H 5 ? 1 G DC 6 1_555 H DG 5 1_555 G 2PR 8 1_555 H DT 4 1_555 -0.808 -1.365 3.345 -1.061 9.310 30.320 -4.157 1.290 2.837 17.288 1.971 31.703 33 GG_DC62PR8:DT4DG5_HH G 6 ? H 5 ? G 8 ? H 4 ? 1 G 2PR 8 1_555 H DT 4 1_555 G DC 9 1_555 H DG 3 1_555 0.250 -1.834 3.266 -1.031 4.571 42.170 -2.985 -0.447 3.054 6.330 1.427 42.418 34 GG_2PR8DC9:DG3DT4_HH G 8 ? H 4 ? G 9 ? H 3 ? 1 G DC 9 1_555 H DG 3 1_555 G DC 10 1_555 H DG 2 1_555 -0.697 -1.742 3.226 1.262 6.696 39.318 -3.281 1.159 2.880 9.862 -1.859 39.881 35 GG_DC9DC10:DG2DG3_HH G 9 ? H 3 ? G 10 ? H 2 ? 1 G DC 10 1_555 H DG 2 1_555 G DC 11 1_555 H DG 1 1_555 -0.002 -1.722 3.012 3.505 4.537 36.470 -3.266 0.425 2.773 7.195 -5.558 36.903 36 GG_DC10DC11:DG1DG2_HH G 10 ? H 2 ? G 11 ? H 1 ? # _pdbx_audit_support.funding_organization 'Japan Agency for Medical Research and Development (AMED)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details 4MRNA # _atom_sites.entry_id 25LU _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.010735 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010735 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.039562 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P # loop_ #